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databio / pepatac Public

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WIP: refgenie1 migration (do not merge)#327

Draft

nsheff wants to merge 10 commits into

devdatabio/pepatac:devfrom

refgenie1databio/pepatac:refgenie1Copy head branch name to clipboard

Conversation Commits10 (10)Checks Files changed

Draft

WIP: refgenie1 migration (do not merge)#327
nsheff wants to merge 10 commits into
devfrom
refgenie1

Commits

Commits on May 4, 2026

pepatac: remove dead refgenconf import; add audit + findings
nsheff
committed
pepatac: migrate sample pipeline interface to refgenie1 populator
nsheff
committed
pepatac: replace refgenconf with refgenie 1.0.0
nsheff
committed
pepatac: update docs for refgenie 1.0 syntax
nsheff
committed
findings: add validation-discovered API/CLI/pip gaps
nsheff
committed
validation: end-to-end run notes + final findings
nsheff
committed

Commits on May 18, 2026

drafts at changing qc backend
nsheff
committed
Add Python summarizer (project-level) replacing R
nsheff
committed
Complete drop-r-gtars QC plots and align partition widths with R
nsheff
committed
Merge drop-r-gtars: per-sample QC + project-level summarizer
nsheff
committed

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