differences for PR #173

Author: actions-user

index.md

@@ -49,10 +49,10 @@ More information about this data is available on the [Data page](https://datacar
 
 | Lesson | Overview                                                                                                                                                                      | 
 | ----------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------ |
-| [Project organization and management](https://datacarpentry.github.io/organization-genomics/)       | Learn how to structure your metadata, organize and document your genomics data and bioinformatics workflow, and access data on the NCBI sequence read archive (SRA) database. | 
-| [Introduction to the command line](https://datacarpentry.github.io/shell-genomics/)       | Learn to navigate your file system, create, copy, move, and remove files and directories, and automate repetitive tasks using scripts and wildcards.                          | 
-| [Data wrangling and processing](https://datacarpentry.github.io/wrangling-genomics/)       | Use command-line tools to perform quality control, align reads to a reference genome, and identify and visualize between-sample variation.                                    | 
-| [Introduction to cloud computing for genomics](https://www.datacarpentry.org/cloud-genomics/)       | Learn how to work with Amazon AWS cloud computing and how to transfer data between your local computer and cloud resources.                                                   | 
+| [Project organization and management](https://datacarpentry.org/organization-genomics/)       | Learn how to structure your metadata, organize and document your genomics data and bioinformatics workflow, and access data on the NCBI sequence read archive (SRA) database. | 
+| [Introduction to cloud computing for genomics](https://datacarpentry.org/cloud-genomics/)       | Learn how to work with Amazon AWS cloud computing and how to transfer data between your local computer and cloud resources.                                                   | 
+| [Introduction to the command line](https://datacarpentry.org/shell-genomics/)       | Learn to navigate your file system, create, copy, move, and remove files and directories, and automate repetitive tasks using scripts and wildcards.                          | 
+| [Data wrangling and processing](https://datacarpentry.org/wrangling-genomics/)       | Use command-line tools to perform quality control, align reads to a reference genome, and identify and visualize between-sample variation.                                    | 
 
 # Optional Additional Lessons
 
@@ -72,20 +72,22 @@ If you want to run your own instance of the server used for this workshop, follo
 
 ### Schedule A (2 days OR 4 half days)
 
-- Half-day 1: [Project organization and management](https://datacarpentry.github.io/organization-genomics/) \& [Introduction to the command line](https://datacarpentry.github.io/shell-genomics/)
-- Half-day 2: [Introduction to the command line](https://datacarpentry.github.io/shell-genomics/) (continued).
-- Half-day 3 \& 4 : [Data wrangling and processing](https://datacarpentry.github.io/wrangling-genomics/)
+- Half-day 1: [Project organization and management](https://datacarpentry.org/organization-genomics/) \& [Introduction to cloud computing for genomics](https://datacarpentry.org/cloud-genomics/)
+- Half-day 2: [Introduction to the command line](https://datacarpentry.org/shell-genomics/)
+- Half-day 3 : [Introduction to the command line](https://datacarpentry.org/shell-genomics/) (continued) \& [Data wrangling and processing](https://datacarpentry.org/wrangling-genomics/)
+- Half-day 4 : [Data wrangling and processing](https://datacarpentry.org/wrangling-genomics/) (continued)
 
 ### Schedule B (2 days OR 4 half days)
 
-- Half-day 1: [Project organization and management](https://datacarpentry.github.io/organization-genomics/) \& [Introduction to the command line](https://datacarpentry.github.io/shell-genomics/)
-- Half-day 2: [Introduction to the command line](https://datacarpentry.github.io/shell-genomics/) (continued)
+- Half-day 1: [Project organization and management](https://datacarpentry.org/organization-genomics/) \& [Introduction to cloud computing for genomics](https://datacarpentry.org/cloud-genomics/)
+- Half-day 2: [Introduction to the command line](https://datacarpentry.org/shell-genomics/)
 - Half-day 3 \& 4: [Intro to R and RStudio for Genomics](https://datacarpentry.org/genomics-r-intro/)
 
 ### Schedule C (3 days OR 6 half days)
-
-- Half-day 1: [Project organization and management](https://datacarpentry.github.io/organization-genomics/) \& [Introduction to the command line](https://datacarpentry.github.io/shell-genomics/)
-- Half-day 2: [Introduction to the command line](https://datacarpentry.github.io/shell-genomics/) (continued)
-- Half-day 3 \& 4 : [Data wrangling and processing](https://datacarpentry.github.io/wrangling-genomics/)
+ 
+- Half-day 1: [Project organization and management](https://datacarpentry.org/organization-genomics/) \& [Introduction to cloud computing for genomics](https://datacarpentry.org/cloud-genomics/)
+- Half-day 2: [Introduction to the command line](https://datacarpentry.org/shell-genomics/)
+- Half-day 3 : [Introduction to the command line](https://datacarpentry.org/shell-genomics/) (continued) \& [Data wrangling and processing](https://datacarpentry.org/wrangling-genomics/)
+- Half-day 4 : [Data wrangling and processing](https://datacarpentry.org/wrangling-genomics/) (continued)
 - Half-day 5 \& 6: [Intro to R and RStudio for Genomics](https://datacarpentry.org/genomics-r-intro/)
 

md5sum.txt

@@ -2,7 +2,7 @@
 "CODE_OF_CONDUCT.md" "d4d213107229d04d444bd8f94cbe2c42" "site/built/CODE_OF_CONDUCT.md" "2023-09-19"
 "LICENSE.md" "23538bfe5345c8d5b0c7a99b117323e2" "site/built/LICENSE.md" "2025-02-04"
 "config.yaml" "e0f88b2fa9a955366790c7554c781b0d" "site/built/config.yaml" "2023-09-19"
-"index.md" "e69598ad47706c6a6c06392e4dd0a105" "site/built/index.md" "2025-10-27"
+"index.md" "e2582cc1678aeb72f8d5194d07a3dad1" "site/built/index.md" "2026-04-07"
 "instructors/AMI-setup.md" "975cf89a132ee84cbc74332d7b4b4fb3" "site/built/AMI-setup.md" "2025-02-10"
 "instructors/faq.md" "9ae1f266942f3ff15d36219405bf35b4" "site/built/faq.md" "2024-07-13"
 "instructors/instructor-notes.md" "b963ac0859abcde3d03bb7c14fa38f69" "site/built/instructor-notes.md" "2023-09-19"