@@ -55,49 +55,20 @@ In this lesson you will learn how to use the command line interface to move arou
5555On a Mac or Linux machine, you can access a shell through a program called Terminal, which is already available
5656on your computer. If you're using Windows, you'll need to download a separate program to access the shell.
5757
58-
59- > ## Accessing the shell
60- > ** Mac**
61- > On Mac the shell is available through Terminal
62- > Applications -> Utilities -> Terminal
63- > (Shortcut: Type ` command + spacebar ` to open Spotlight Search then type terminal and press enter to open the application.)
64- > You can drag the Terminal application to your Dock for easy access.
65- >
66- > ** Windows**
67- > For Windows, we're going to be using gitbash.
68- > Download and install [ gitbash] ( http://msysgit.github.io ) .
69- > Open up the program.
70- >
71- > ** Linux**
72- > The shell is available by default when you connect to your AWS instance.
73- {: .callout}
74-
75-
76- ## Starting with the shell
77-
7858We will spend most of our time learning about the basics of the shell
79- by manipulating some experimental data.
80-
81- Some of the data we're going to be working with is quite large, and
59+ by manipulating some experimental data. Some of the data we're going to be working with is quite large, and
8260we're also going to be using several bioinformatics packages in later
8361lessons to work with this data. To avoid having to spend time
8462downloading the data and downloading and installing all of the software,
8563we're going to be working with data on a remote server.
8664
87- You can log-in to the remote server using the information that your instructor has pasted into the Etherpad. First
88- open your shell (through the Terminal application) and then enter the text starting
89- with ` ssh ` from the Etherpad. Each of you will have a different log-in. This will
90- prevent us from accidentally changing each other's files as we work through the
91- exercises. For example, you might type:
65+ You can log-in to the remote server using the instructions
66+ [ here] ( http://www.datacarpentry.org/cloud-genomics/02-logging-onto-cloud/#logging-onto-a-cloud-instance ) .
67+ Your instructor will supply the ip_address and password that you need to login.
9268
93- ~~~
94- $ ssh dcuser@ec2-34-229-196-68.compute-1.amazonaws.com
95- ~~~
96- {: .bash}
97-
98- Make sure you replace ` ec2-34-229-196-68.compute-1.amazonaws.com ` with your individual log-in.
99-
100- You will be prompted to enter a password. The password will be provided to you by your instructor.
69+ Each of you will have a different ip_address. This will
70+ prevent us from accidentally changing each other's files as we work through the
71+ exercises. The password will be the same for everyone.
10172
10273After loging on, you will see a screen showing something like this:
10374
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