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Additional Resources

A collection of additional open-source tools for building and operating scientific data pipelines.

APIs

  • :fontawesome-brands-java:{ .lg .middle } DataJoint MATLAB

    A MATLAB client for defining, operating, and querying data pipelines.

    :octicons-arrow-right-24: Legacy docs | Source code

  • :fontawesome-solid-flask:{ .lg .middle } DataJoint Pharus

    A REST API server for interacting with DataJoint pipelines.

    :octicons-arrow-right-24: Docs | Source code

Web Applications

  • :fontawesome-brands-chrome:{ .lg .middle } DataJoint LabBook

    A browser-based graphical user interface for data entry and navigation.

    :octicons-arrow-right-24: Legacy docs | Source code

  • :fontawesome-brands-chrome:{ .lg .middle } DataJoint SciViz

    A framework for making low-code web apps for data visualization.

    :octicons-arrow-right-24: Docs | Source code

Container Images

graph
  %% Give short names
  dj["datajoint/datajoint"]
  base["datajoint/djbase"]
  lab["datajoint/djlab"]
  hub["datajoint/djlabhub"]
  test["datajoint/djtest"]
  conda3["datajoint/miniconda3"]
  mysql["datajoint/mysql"]
  %% Define connections
  conda3 --> base --> test;
  base --> dj;
  base --> lab --> hub;
  %% Add all to class
  class dj,base,lab,hub,test,conda3,mysql boxes;
  classDef boxes stroke:#333; %% Grey stroke for class
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  • :fontawesome-brands-docker:{ .lg .middle } datajoint/mysql

    MySQL server configured to work with DataJoint.

    :octicons-arrow-right-24: Docker image | Source code

  • :fontawesome-brands-docker:{ .lg .middle } datajoint/miniconda3

    Minimal Python Docker image with conda.

    :octicons-arrow-right-24: Docker image | Legacy docs | Source code

  • :fontawesome-brands-docker:{ .lg .middle } datajoint/djbase

    Minimal base Docker image with DataJoint Python dependencies installed.

    :octicons-arrow-right-24: Docker image | Legacy docs | Source code

  • :fontawesome-brands-docker:{ .lg .middle } datajoint/djtest

    Docker image for running tests related to DataJoint Python.

    :octicons-arrow-right-24: Docker image | Legacy docs | Source code

  • :fontawesome-brands-docker:{ .lg .middle } datajoint/datajoint

    Official DataJoint Docker image.

    :octicons-arrow-right-24: Docker image | Source code

  • :fontawesome-brands-docker:{ .lg .middle } datajoint/djlab

    Docker image optimized for running a JupyterLab environment with DataJoint Python.

    :octicons-arrow-right-24: Docker image | Source code

  • :fontawesome-brands-docker:{ .lg .middle } datajoint/djlabhub

    Docker image optimized for deploying to JupyterHub a JupyterLab environment with DataJoint Python.

    :octicons-arrow-right-24: Docker image | Source code