datajoint-python/.github/workflows/test.yaml at ae5fd68d9c3d892935ce9b52fa50e875fb09ed42 · datajoint/datajoint-python · GitHub

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name: Test

on:
  push:
    branches:
      - "**"
      - "!gh-pages"
      - "!stage*"
    paths:
      - "src/datajoint/**"
      - "tests/**"
      - "pyproject.toml"
      - ".github/workflows/test.yaml"
  pull_request:
    branches:
      - "**"
      - "!gh-pages"
      - "!stage*"
    paths:
      - "src/datajoint/**"
      - "tests/**"
      - "pyproject.toml"
      - ".github/workflows/test.yaml"

jobs:
  test:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        py_ver: ["3.10", "3.11", "3.12", "3.13"]
        mysql_ver: ["8.0"]

    services:
      mysql:
        image: mysql:${{ matrix.mysql_ver }}
        env:
          MYSQL_ROOT_PASSWORD: password
        ports:
          - 3306:3306
        options: >-
          --health-cmd="mysqladmin ping -h localhost"
          --health-interval=10s
          --health-timeout=5s
          --health-retries=5

    steps:
      - uses: actions/checkout@v4

      - name: Start MinIO
        run: |
          docker run -d --name minio \
            -p 9000:9000 \
            -e MINIO_ROOT_USER=datajoint \
            -e MINIO_ROOT_PASSWORD=datajoint \
            minio/minio:latest server /data
          # Wait for MinIO to be ready
          for i in {1..30}; do
            if curl -sf http://127.0.0.1:9000/minio/health/live; then
              echo "MinIO is ready"
              break
            fi
            echo "Waiting for MinIO... ($i/30)"
            sleep 2
          done

      - name: Set up Python ${{ matrix.py_ver }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.py_ver }}

      - name: Install dependencies
        run: pip install -e ".[test]"

      - name: Run tests
        env:
          DJ_USE_EXTERNAL_CONTAINERS: "1"
          DJ_HOST: 127.0.0.1
          DJ_PORT: 3306
          DJ_USER: root
          DJ_PASS: password
          S3_ENDPOINT: 127.0.0.1:9000
          S3_ACCESS_KEY: datajoint
          S3_SECRET_KEY: datajoint
        run: pytest --cov-report term-missing --cov=datajoint tests -v

  # Unit tests run without containers (faster feedback)
  unit-tests:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        py_ver: ["3.11"]
    steps:
      - uses: actions/checkout@v4

      - name: Set up Python ${{ matrix.py_ver }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.py_ver }}

      - name: Install dependencies
        run: pip install -e ".[test]"

      - name: Run unit tests
        run: pytest tests/unit -v