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Merge pull request #3 from Yambottle/master
Minor fix for the mean_waveforms cmd call
2 parents b539332 + 5317017 commit dc40b11

1 file changed

Lines changed: 9 additions & 10 deletions

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  • ecephys_spike_sorting/modules/mean_waveforms

ecephys_spike_sorting/modules/mean_waveforms/__main__.py

Lines changed: 9 additions & 10 deletions
Original file line numberDiff line numberDiff line change
@@ -86,16 +86,15 @@ def calculate_mean_waveforms(args):
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print(cwaves_cmd)
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cmd_parts = list()
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cmd_parts.extend([exe_path, ' -spikeglx_bin=', spikeglx_bin])
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cmd_parts.extend([' -clus_table_npy=', clus_table_npy])
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cmd_parts.extend([' -clus_time_npy=', clus_time_npy])
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cmd_parts.extend([' -clus_lbl_npy=', clus_lbl_npy])
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cmd_parts.extend([' -dest=', dest])
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cmd_parts.extend([' -samples_per_spike=', repr(args['mean_waveform_params']['samples_per_spike'])])
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cmd_parts.extend([' -pre_samples=', repr(args['mean_waveform_params']['pre_samples'])])
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cmd_parts.extend([' -num_spikes=', repr(args['mean_waveform_params']['spikes_per_epoch'])])
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cmd_parts.extend([' -snr_radius=', repr(args['mean_waveform_params']['snr_radius'])])
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print(cmd_parts)
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cmd_parts.extend([exe_path, ' -spikeglx_bin='+spikeglx_bin])
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cmd_parts.append(' -clus_table_npy='+clus_table_npy)
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cmd_parts.append(' -clus_time_npy='+clus_time_npy)
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cmd_parts.append(' -clus_lbl_npy='+clus_lbl_npy)
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cmd_parts.append(' -dest='+dest)
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cmd_parts.append(' -samples_per_spike='+repr(args['mean_waveform_params']['samples_per_spike']))
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cmd_parts.append(' -pre_samples='+repr(args['mean_waveform_params']['pre_samples']))
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cmd_parts.append(' -num_spikes='+repr(args['mean_waveform_params']['spikes_per_epoch']))
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cmd_parts.append(' -snr_radius='+repr(args['mean_waveform_params']['snr_radius']))
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# make the C_Waves call
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#subprocess.call(cwaves_cmd)

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