figpack/.github/workflows/test.yml at main · datajoint/figpack · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
name: Tests

on:
  push:
    branches: [main, develop]
  pull_request:
    branches: [main, develop]
  workflow_dispatch:

jobs:
  test:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ["3.11"]
        zarr-version: ["zarr2", "zarr3"]

    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}

      - name: Set up Node.js
        uses: actions/setup-node@v4
        with:
          node-version: "18"
          cache: "npm"
          cache-dependency-path: figpack-figure/package-lock.json

      - name: Install GUI dependencies and build
        run: |
          cd figpack-figure
          npm ci
          npm run build

      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install ".[test-${{ matrix.zarr-version }}]"

      - name: Run tests with pytest
        run: |
          if [ "${{ matrix.zarr-version }}" = "zarr3" ]; then
            pytest -m "not spikeinterface" --cov=figpack --cov-report=xml --cov-report=term-missing
          else
            pytest --cov=figpack --cov-report=xml --cov-report=term-missing
          fi

      - name: Upload coverage reports to Codecov
        uses: codecov/codecov-action@v5
        with:
          token: ${{ secrets.CODECOV_TOKEN }}

      - name: Upload coverage to Codecov
        if: matrix.python-version == '3.11'
        uses: codecov/codecov-action@v3
        with:
          file: ./coverage.xml
          flags: unittests
          name: codecov-umbrella
          fail_ci_if_error: false

  lint:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: "3.11"

      - name: Set up Node.js
        uses: actions/setup-node@v4
        with:
          node-version: "18"
          cache: "npm"
          cache-dependency-path: figpack-figure/package-lock.json

      - name: Install GUI dependencies and build
        run: |
          cd figpack-figure
          npm ci
          npm run build

      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install ".[dev]"
          pip install black

      - name: Check code formatting with black
        run: |
          black --check --diff figpack tests