Merge pull request #448 from datashield/v6.3.5-dev

V6.3.5 dev

Author: StuartWheater

.github/workflows/dsBase_test_suite.yaml

@@ -15,7 +15,6 @@ on:
   push:
   schedule:
     - cron: '0 0 * * 0'   # Weekly
-    - cron: '0 1 * * *'   # Nightly
 
 jobs:
   dsBase_test_suite:
@@ -153,28 +152,30 @@ jobs:
           echo "branch:${{ env.BRANCH_NAME }}" > ${{ env.WORKFLOW_ID }}.txt
           echo "os:$(lsb_release -ds)" >> ${{ env.WORKFLOW_ID }}.txt
           echo "R:$(R --version | head -n1)" >> ${{ env.WORKFLOW_ID }}.txt
+          Rscript --vanilla -e 'sessionInfo()' >> session_info_${{ env.WORKFLOW_ID }}.txt
         working-directory: dsBase/logs
 
       - name: Parse results from testthat and covr
         run: |
-          Rscript --verbose --vanilla ../testStatus/source/parse_test_report.R logs/
+          Rscript --verbose --vanilla ../testStatus/source/parse_test_report.R logs/ logs/ https://github.com/datashield/${{ env.PROJECT_NAME }}/blob/${{ env.BRANCH_NAME }} '[^-:.]+' '(?<=::)[^:]+(?=::)'
         working-directory: dsBase
+        env:
+          PROJECT_NAME: ${{ env.PROJECT_NAME }}
+          BRANCH_NAME: ${{ env.BRANCH_NAME }}
 
       - name: Render report
         run: |
           cd testStatus
           
           mkdir -p new/logs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/
-          mkdir -p new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/
           mkdir -p new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/latest/
           
           # Copy logs to new logs directory location
           cp -rv ../${{ env.PROJECT_NAME }}/logs/* new/logs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/
           cp -rv ../${{ env.PROJECT_NAME }}/logs/${{ env.WORKFLOW_ID }}.txt new/logs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/
           
           R -e 'input_dir <- file.path("../new/logs", Sys.getenv("PROJECT_NAME"), Sys.getenv("BRANCH_NAME"), Sys.getenv("WORKFLOW_ID")); quarto::quarto_render("source/test_report.qmd", execute_params = list(input_dir = input_dir))'
-          mv source/test_report.html new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/index.html
-          cp -r new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/* new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/latest
+          mv source/test_report.html new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/latest/index.html
           
         env:
           PROJECT_NAME: ${{ env.PROJECT_NAME }}

DESCRIPTION

@@ -5,7 +5,7 @@ Description: Base 'DataSHIELD' functions for the server side. 'DataSHIELD' is a
     been designed to only share non disclosive summary statistics, with built in automated output
     checking based on statistical disclosure control. With data sites setting the threshold values for
     the automated output checks. For more details, see 'citation("dsBase")'.
-Version: 6.3.4
+Version: 6.3.5.9000
 Authors@R: c(person(given = "Paul",
                     family = "Burton",
                     role = c("aut"),

docs/404.html

@@ -1,5 +1,5 @@
 pandoc: 3.1.3
-pkgdown: 2.1.3
+pkgdown: 2.2.0
 pkgdown_sha: ~
 articles: {}
-last_built: 2025-09-17T15:04Z
+last_built: 2025-11-30T16:44Z