Merge pull request #669 from StuartWheater/v6.3.6-dev

Updates to follow align with 6.3.6 virtual release

Author: StuartWheater

.Rbuildignore

@@ -17,8 +17,8 @@
 ^R/secure.global.ranking.md$
 ^_pkgdown\.yml$
 ^docs$
-^dsBase_6.3.5.tar.gz$
-^dsBase_6.3.5-permissive.tar.gz$
+^dsBase_6.3.6.tar.gz$
+^dsBase_6.3.6-permissive.tar.gz$
 ^dsDanger_6.3.4.tar.gz$
 ^\.circleci$
 ^\.circleci/config\.yml$

.github/workflows/dsBaseClient_test_suite.yaml

@@ -138,7 +138,7 @@ jobs:
       - name: Install dsBase to Armadillo
         run: |
           curl -u admin:admin -X GET http://localhost:8080/packages
-          curl -u admin:admin -H 'Content-Type: multipart/form-data' -F "file=@dsBase_6.3.5-permissive.tar.gz" -X POST http://localhost:8080/install-package
+          curl -u admin:admin -H 'Content-Type: multipart/form-data' -F "file=@dsBase_6.3.6-permissive.tar.gz" -X POST http://localhost:8080/install-package
           sleep 60
           docker restart dsbaseclient-armadillo-1
           sleep 30

armadillo_azure-pipelines.yml

@@ -236,7 +236,7 @@ jobs:
 
       curl -u admin:admin -X GET http://localhost:8080/packages
 
-      curl -u admin:admin --max-time 300 -v -H 'Content-Type: multipart/form-data' -F "file=@dsBase_6.3.5-permissive.tar.gz" -X POST http://localhost:8080/install-package
+      curl -u admin:admin --max-time 300 -v -H 'Content-Type: multipart/form-data' -F "file=@dsBase_6.3.6-permissive.tar.gz" -X POST http://localhost:8080/install-package
       sleep 60
 
       docker container restart dsbaseclient_armadillo_1

azure-pipelines.yml

@@ -217,7 +217,7 @@ jobs:
   - bash: |
       R -q -e "library(opalr); opal <- opal.login(username = 'administrator', password = 'datashield_test&', url = 'http://localhost:8080'); opal.put(opal, 'system', 'conf', 'general', '_rPackage'); opal.logout(opal)"
 
-      R -q -e "library(opalr); opal <- opal.login('administrator','datashield_test&', url='http://localhost:8080/'); dsadmin.install_github_package(opal, 'dsBase', username = 'datashield', ref = 'v6.3.5-dev'); opal.logout(opal)"
+      R -q -e "library(opalr); opal <- opal.login('administrator','datashield_test&', url='http://localhost:8080/'); dsadmin.install_github_package(opal, 'dsBase', username = 'datashield', ref = 'v6.3.6-dev'); opal.logout(opal)"
 
       sleep 60
 

dsBase_6.3.5-permissive.tar.gz dsBase_6.3.6-permissive.tar.gzdsBase_6.3.5-permissive.tar.gz renamed to dsBase_6.3.6-permissive.tar.gz

@@ -217,7 +217,7 @@ jobs:
   - bash: |
       R -q -e "library(opalr); opal <- opal.login(username = 'administrator', password = 'datashield_test&', url = 'http://localhost:8080'); opal.put(opal, 'system', 'conf', 'general', '_rPackage'); opal.logout(opal)"
 
-      R -q -e "library(opalr); opal <- opal.login('administrator','datashield_test&', url='http://localhost:8080/'); dsadmin.install_github_package(opal, 'dsBase', username = 'datashield', ref = 'v6.3.5-dev'); opal.logout(opal)"
+      R -q -e "library(opalr); opal <- opal.login('administrator','datashield_test&', url='http://localhost:8080/'); dsadmin.install_github_package(opal, 'dsBase', username = 'datashield', ref = 'v6.3.6-dev'); opal.logout(opal)"
 
       sleep 60
 

dsBase_6.3.5.tar.gz dsBase_6.3.6.tar.gzdsBase_6.3.5.tar.gz renamed to dsBase_6.3.6.tar.gz

@@ -67,8 +67,13 @@ stdout.log.path: '/logs/armadillo.log'
 
 logging:
   level:
-    root: INFO
+    root: "warn"
     ## change to DEBUG to have more details, typically when developing
-    org.molgenis: INFO
+    org.molgenis: "warn"
     ## Don't log upload data
-    org.apache.coyote.http11.Http11InputBuffer: INFO
+    org.apache.coyote.http11.Http11InputBuffer: "warn"
+    ## SpringFramework
+    org.springframework.boot: "warn"
+    org.springframework.web: "warn"
+    org.springframework.core: "warn"
+    org.springframework.codex: "warn"

opal_azure-pipelines.yml

@@ -1,14 +1,14 @@
 "refer_name","rate","lower_tolerance","upper_tolerance"
-"conndisconn::perf::simple0","0.04918","0.5","2"
-"ds.abs::perf::0","1.184","0.5","2"
-"ds.asInteger::perf:0","1.297","0.5","2"
-"ds.asList::perf:0","2.884","0.5","2"
-"ds.asNumeric::perf:0","1.354","0.5","2"
-"ds.assign::perf::0","2.745","0.5","2"
-"ds.class::perf::combine:0","3.261","0.5","2"
-"ds.colnames::perf:0","8.566","0.5","2"
-"ds.exists::perf::combine:0","6.342","0.5","2"
-"ds.length::perf::combine:0","7.835","0.5","2"
-"ds.mean::perf::combine:0","8.127","0.5","2"
-"ds.mean::perf::split:0","8.109","0.5","2"
-"void::perf::void::0","20280.0","0.5","2"
+"conndisconn::perf::simple0","0.06790","0.5","2"
+"ds.abs::perf::0","1.998","0.5","2"
+"ds.asInteger::perf:0","2.111","0.5","2"
+"ds.asList::perf:0","4.550","0.5","2"
+"ds.asNumeric::perf:0","1.879","0.5","2"
+"ds.assign::perf::0","4.806","0.5","2"
+"ds.class::perf::combine:0","3.865","0.5","2"
+"ds.colnames::perf:0","9.577","0.5","2"
+"ds.exists::perf::combine:0","8.411","0.5","2"
+"ds.length::perf::combine:0","7.957","0.5","2"
+"ds.mean::perf::combine:0","9.049","0.5","2"
+"ds.mean::perf::split:0","9.429","0.5","2"
+"void::perf::void::0","21400.0","0.5","2"