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@@ -172,7 +172,7 @@ If you want to calculate the fiber coherency `CoherencyMap.npy` or the angle tow
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fiber_list, cell_list, out_list = generate_lists(fiber_list_string, None, output_main =output_folder)
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```
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This option will start the analysis without the second image pair of cell images and automatically compute all maps within the entire image using the `ignore_cell_outline=True` argument. The option might be usefull to analyze the angle of matrix fibers with respect to the x-axis or image center, or the coherence of collagen or actin stress fibers. Additionally, the typical orientation map is calculated with respect to the image center.
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This option will start the analysis without the second image pair of cell images and automatically compute all maps within the entire image using the `ignore_cell_outline=True` argument. The typical orientation map is calculated with respect to the image center.
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<img src="../master//docs/images/npy-files-3.png" width="800" />
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