diff --git a/packages/uni-mp-alipay/src/compiler/options.ts b/packages/uni-mp-alipay/src/compiler/options.ts
index af72796bae..0ce7fa518a 100644
--- a/packages/uni-mp-alipay/src/compiler/options.ts
+++ b/packages/uni-mp-alipay/src/compiler/options.ts
@@ -166,6 +166,7 @@ export const options: UniMiniProgramPluginOptions = {
   app: {
     darkmode: false,
     subpackages: true,
+    independentSubpackages: true,
     plugins: true,
     usingComponents: true,
     normalize(appJson) {
diff --git a/packages/uni-mp-alipay/src/runtime/index.ts b/packages/uni-mp-alipay/src/runtime/index.ts
index 47988f0057..655934311e 100644
--- a/packages/uni-mp-alipay/src/runtime/index.ts
+++ b/packages/uni-mp-alipay/src/runtime/index.ts
@@ -2,6 +2,7 @@ import { EventChannel } from '@dcloudio/uni-shared'
 
 import {
   initCreateApp,
+  initCreateIndependentSubpackageApp,
   initCreatePluginApp,
   initCreateSubpackageApp,
 } from '@dcloudio/uni-mp-core'
@@ -12,14 +13,26 @@ import * as parseAppOptions from './parseAppOptions'
 
 import { initCreatePage } from './createPage'
 import { initCreateComponent } from './createComponent'
+
+declare const __UNI_MP_INDEPENDENT_RUNTIME__: boolean
+
 export const createApp = initCreateApp(parseAppOptions)
 export const createPage = initCreatePage()
 export const createComponent = initCreateComponent()
 export const createPluginApp = initCreatePluginApp(parseAppOptions)
 export const createSubpackageApp = initCreateSubpackageApp(parseAppOptions)
-;(my as any).EventChannel = EventChannel
-;(my as any).createApp = createApp
-;(my as any).createPage = createPage
-;(my as any).createComponent = createComponent
-;(my as any).createPluginApp = createPluginApp
-;(my as any).createSubpackageApp = createSubpackageApp
+export const createIndependentSubpackageApp =
+  initCreateIndependentSubpackageApp()
+
+const isIndependentRuntime =
+  typeof __UNI_MP_INDEPENDENT_RUNTIME__ !== 'undefined' &&
+  __UNI_MP_INDEPENDENT_RUNTIME__ === true
+if (!isIndependentRuntime) {
+  ;(my as any).EventChannel = EventChannel
+  ;(my as any).createApp = createApp
+  ;(my as any).createPage = createPage
+  ;(my as any).createComponent = createComponent
+  ;(my as any).createPluginApp = createPluginApp
+  ;(my as any).createSubpackageApp = createSubpackageApp
+  ;(my as any).createIndependentSubpackageApp = createIndependentSubpackageApp
+}