refactor(github): use App installation token + bot identity in mesh consumers

[tlgimenes]

What is this contribution about?

Refactors Mesh's GitHub consumer code to rely on the App installation token already stored in the mcp-github connection's downstream token, dropping all uses of the user's GitHub identity. The mcp-github connection model and storage are unchanged — only consumer call sites are touched.

Two surfaces change:

• apps/mesh/src/shared/github-clone-info.ts no longer fetches GET /user to populate git committer name/email; it returns hardcoded bot identity (mcp-github[bot] + the matching users.noreply.github.com email). Daemon clones are now committed by the App's bot, decoupled from whoever connected GitHub.
• apps/mesh/src/tools/github/list-user-orgs.ts swaps GET /user/installations for GET /installation/repositories and synthesizes a single-installation summary from the first repo's owner. The output schema is preserved so the existing repo-picker UI keeps working without changes.

How to Test

1. Pull this branch and ensure the mcp-github connection is connected at the org level.
2. Trigger a VM_START (sandbox provisioning) flow that exercises buildCloneInfo — confirm git config user.name inside the daemon shows mcp-github[bot] and git config user.email shows mcp-github[bot]@users.noreply.github.com.
3. Open the GitHub repo picker UI: the installation-picker entry shows the App account; selecting it lists repos via the unchanged search_repositories flow.
4. Run bun test apps/mesh/src/shared/github-clone-info.test.ts apps/mesh/src/tools/github/list-user-orgs.test.ts — 12 tests pass.

Migration Notes

No database, schema, or config migration. Hard cutover at the consumer layer: any pre-existing per-user mcp-github connection rows are inert under the new code (consumers no longer need user-scoped tokens). Org admins do not need to reconnect — the same mcp-github connection's downstream token is now interpreted as an App installation token end-to-end.

Review Checklist

• PR title is clear and descriptive
• Changes are tested and working (new github-clone-info.test.ts + updated list-user-orgs.test.ts)
• Documentation is updated (if needed)
• No breaking changes (UI repo-picker output shape preserved)

---

Summary by cubic

Refactors GitHub consumers to use the App installation token end-to-end. Commits now use the bot identity, and org/repo selection reads from the installation’s repositories. No changes to the mcp-github connection model.

• Refactors

  • buildCloneInfo: drops GET /user; commits use mcp-github[bot] with mcp-github[bot]@users.noreply.github.com. Proactively refreshes expired tokens and throws RECONNECT_ERROR when needed.
  • GITHUB_LIST_USER_ORGS: swaps GET /user/installations for GET /installation/repositories?per_page=1; synthesizes a single-install summary from the first repo’s owner; preserves output shape; proactive refresh and 401 retry with RECONNECT_ERROR on failure.

• Bug Fixes

  • Made bot identity constants internal (non-exported) to avoid unused export warnings.

^{Written for commit 2d33fcf. Summary will update on new commits. Review in cubic}

[github-actions]

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[github-actions]

Release Options

Suggested: Patch (2.279.3) — based on refactor: prefix

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Reaction	Type	Next Version
👍	Prerelease	2.279.3-alpha.1
🎉	Patch	2.279.3
❤️	Minor	2.280.0
🚀	Major	3.0.0

Current version: 2.279.2

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