Guard every "apt" system package installation under "sudo"

Author: Growl1234

.github/workflows/ase_plugin_test.yml

@@ -39,7 +39,7 @@ jobs:
 
       - name: Install external tools from toolchain
         run: |
-          apt update && apt install -y xz-utils ninja-build
+          sudo apt update && sudo apt install -y xz-utils ninja-build
           cd toolchain
           ./install_abacus_toolchain_new.sh --with-dftd4=install --dry-run -j8
           ./scripts/stage4/install_stage4.sh

.github/workflows/build_test_cmake.yml

@@ -61,7 +61,7 @@ jobs:
 
       - name: Install external tools from toolchain
         run: |
-          apt update && apt install -y gfortran ninja-build xz-utils
+          sudo apt update && sudo apt install -y gfortran ninja-build xz-utils
           cd toolchain
           ./install_abacus_toolchain_new.sh --with-dftd4=install --dry-run ${{matrix.external_toolchain_args}}
           ./scripts/stage4/install_stage4.sh

.github/workflows/coverage.yml

@@ -23,9 +23,20 @@ jobs:
 
     - name: Install Perl Dependencies and Coverage Tools
       run: |
-        apt update && apt install -y curl jq ca-certificates python3-pip xz-utils ninja-build
-        apt install -y lcov perl-modules
-        apt install -y libcapture-tiny-perl libdatetime-perl libjson-perl libperlio-gzip-perl
+        sudo apt update
+        sudo apt install -y \
+          curl \
+          jq \
+          ca-certificates \
+          python3-pip \
+          xz-utils \
+          ninja-build \
+          lcov \
+          perl-modules \
+          libcapture-tiny-perl \
+          libdatetime-perl \
+          libjson-perl \
+          libperlio-gzip-perl
         lcov --version
 
     - name: Install external tools from toolchain

.github/workflows/dynamic.yml

@@ -20,7 +20,7 @@ jobs:
         uses: actions/checkout@v7
       - name: Install external tools from toolchain
         run: |
-          apt update && apt install -y xz-utils ninja-build
+          sudo apt update && sudo apt install -y xz-utils ninja-build
           cd toolchain
           ./install_abacus_toolchain_new.sh --with-dftd4=install --dry-run -j8
           ./scripts/stage4/install_stage4.sh

.github/workflows/performance.yml

@@ -21,7 +21,7 @@ jobs:
         uses: actions/checkout@v7
       - name: Install Requirements
         run: |
-          apt install -y time
+          sudo apt install -y time
       - name: Test
         run: |
           . /opt/intel/oneapi/setvars.sh || :