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Pull requests: deeptools/deepTools

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Pull requests list

feat: lightweight PCA backend (scipy/numpy SVD)
#1431 opened Jul 8, 2026 by adRn-s Collaborator Loading…
plotHeatmap: add --plotColors argument for profile plot line colors
#1427 opened May 21, 2026 by niekwit Loading…
Clarify GC bias preference in computeGCBias documentation
#1420 opened Oct 3, 2025 by yuw444 Loading…
1 of 4 tasks
[computeMatrixOperations] Add "arithmetic" and "mean" functions to combine sets of matrices generated with computeMatrix before plotting with plotHeatmap
#1419 opened Sep 29, 2025 by VonAlphaBisZulu Loading…
np.warnings is deprecated
#1412 opened Jul 16, 2025 by vivekbhr Member Loading…
1 of 4 tasks
[Docs] Adding diagram visualization for deepTools
#1408 opened Jul 4, 2025 by ivanmilevtues Loading…
1 of 4 tasks
Fixed erroneous args.args in silhouette option of plotHeatmap.py
#1394 opened Apr 15, 2025 by meekrob Loading…
3 tasks
added support for warnings stdlib
#1393 opened Apr 14, 2025 by AdriTara Loading…
4 tasks done
v4 and Galaxy-specific documentation updates
#1390 opened Mar 28, 2025 by wm75 • Draft
[WIP] fixing planemo tests
#1375 opened Jan 24, 2025 by pavanvidem Collaborator • Draft
1 of 4 tasks
5
Dev compute matrix strand 20220301
#1128 opened Mar 1, 2022 by joshtburdick Loading…
1 of 4 tasks
Adding independent ranges by sample option: for zMax zMin yMin and y…
#1116 opened Jan 20, 2022 by organic-chemistry Loading…
3 tasks
1
move legend to up and fix y-axis inward if using different ymax
#1078 opened Jun 30, 2021 by xubeisi Loading…
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