chore: Bump the minor-and-patch group with 7 updates

[dependabot]

Bumps the minor-and-patch group with 7 updates:

Package	From	To
click	8.4.1	8.4.2
pyogrio	0.12.1	0.13.0
geopandas	1.1.3	1.1.4
pandas	3.0.3	3.0.4
obstore	0.10.1	0.11.0
ruff	0.15.18	0.15.20
types-geopandas	1.1.3.20260518	1.1.4.20260628

Updates click from 8.4.1 to 8.4.2

Release notes

Sourced from click's releases.

8.4.2

This is the Click 8.4.1 fix release, which fixes bugs but does not otherwise change behavior and should not result in breaking changes compared to the latest feature release.

PyPI: https://pypi.org/project/click/8.4.2/ Changes: https://click.palletsprojects.com/page/changes/#version-8-4-2 Milestone: https://github.com/pallets/click/milestone/34

• Fix Fish shell completion broken in 8.4.0 by #3126. Newlines and tabs in option help text are now escaped, keeping the original completion format while still supporting multi-line help. #3502 #3043 #3504 #3508
• Deprecated commands and options with empty or missing help text no longer render a stray leading space before the (DEPRECATED) label. #3509
• A {class}Group with invoke_without_command=True marks its subcommand as optional in the usage help, showing [COMMAND] instead of COMMAND. #3059 #3507
• echo_via_pager flushes after each write, so passing a generator streams output to the pager incrementally instead of staying hidden until the pipe buffer fills. #3242 #2542 #3534
• echo_via_pager and get_pager_file no longer close a borrowed stdout stream when no external pager runs, completing the partial I/O operation on closed file fix from #3482. #3449 #3533
• Fix CLI usage symopsis for optional arguments producing double square brackets [[a|b|c]]... whose type already brackets their metavar. #3578
• {func}version_option resolves a package_name that does not match an installed distribution as an import (top-level module) name via {func}importlib.metadata.packages_distributions. Packages whose top-level module name differs from their distribution name (PIL vs Pillow, jwt vs PyJWT) no longer raise RuntimeError out of the box. #2331 #1884 #3125 #3582

Changelog

Sourced from click's changelog.

Version 8.4.2

Unreleased

• Fix Fish shell completion broken in 8.4.0 by {pr}3126. Newlines and tabs in option help text are now escaped, keeping the original completion format while still supporting multi-line help. {issue}3502 {issue}3043 {pr}3504 {pr}3508
• Deprecated commands and options with empty or missing help text no longer render a stray leading space before the (DEPRECATED) label. {pr}3509
• A {class}Group with invoke_without_command=True marks its subcommand as optional in the usage help, showing [COMMAND] instead of COMMAND. {issue}3059 {pr}3507
• echo_via_pager flushes after each write, so passing a generator streams output to the pager incrementally instead of staying hidden until the pipe buffer fills. {issue}3242 {issue}2542 {pr}3534
• echo_via_pager and get_pager_file no longer close a borrowed stdout stream when no external pager runs, completing the partial I/O operation on closed file fix from {pr}3482. {issue}3449 {pr}3533

Commits

• b2e30a1 Release version 8.4.2
• 7a16b20 Fix package_name resolution when module differs from distribution name (#3582)
• bec5928 Fix package_name resolution when top-level module differs from distribution...
• 916883a Fix tests to not rely on -Wdefault option (#3591)
• 09195f6 Fix double-bracketing of choices in synopsis (#3578)
• 1557e26 Check for warning exception with idiomatic context manager
• d9ff133 Static typing improvements in click.shell_completion (#3460)
• 762c97e Fix double-bracketing of choices in synopsis
• 8929d39 Convert changes to markdown. (#3559)
• 237be50 Move changes headings down a level.
• Additional commits viewable in compare view

Updates pyogrio from 0.12.1 to 0.13.0

Release notes

Sourced from pyogrio's releases.

Version v0.13.0

Improvements

• Support reading Time type columns by default (was already supported with use_arrow=False) (#617).
• Add list_drivers_details() function to list the available drivers with more detailed properties like the long driver names, whether read/append/write is supported by the driver, the help topic URL, etc (#656).
• Add whether append is supported in list_drivers (#559)
• Add vsi_curl_clear_cache() function to allow users to clear the local GDAL vsi cache associated with /vsicurl/ (and related file systems) (#605).
• Improve performance of read_dataframe (especially if a filter is used) and write_dataframe without Arrow (#577, #674).
• Unlock the GIL during GDAL functions that can take significant time to improve performance when multithreading (#572).

Bug fixes

• Fix error in write_dataframe with use_arrow=False when writing an object-type column with datetimes without any time zone offsets or with a mix of offsets and no offsets (#634).
• Fix writing non-string object columns with arrow (#630).
• Fix writing empty string category columns with arrow fails (#621).
• Fix overwriting a corrupt fileGDB directory (#600).
• Fix attribute data being incorrectly written with KML driver (#650).

Packaging

• The GDAL library included in the wheels is upgraded from 3.11.4 to 3.12.4 (#658).
• The wheels for Python 3.11+ are now distributed on PyPI as a single ABI3 wheel per platform (#660).

Changelog

Sourced from pyogrio's changelog.

0.13.0 (2026-06-26)

Improvements

• Support reading Time type columns by default (was already supported with use_arrow=False) (#617).
• Add list_drivers_details() function to list the available drivers with more detailed properties like the long driver names, whether read/append/write is supported by the driver, the help topic URL, etc (#656).
• Add whether append is supported in list_drivers (#559)
• Add vsi_curl_clear_cache() function to allow users to clear the local GDAL vsi cache associated with /vsicurl/ (and related file systems) (#605).
• Improve performance of read_dataframe (especially if a filter is used) and write_dataframe without Arrow (#577, #674).
• Unlock the GIL during GDAL functions that can take significant time to improve performance when multithreading (#572).

Bug fixes

• Fix error in write_dataframe with use_arrow=False when writing an object-type column with datetimes without any time zone offsets or with a mix of offsets and no offsets (#634).
• Fix writing non-string object columns with arrow (#630).
• Fix writing empty string category columns with arrow fails (#621).
• Fix overwriting a corrupt fileGDB directory (#600).
• Fix attribute data being incorrectly written with KML driver (#650).

Packaging

• The GDAL library included in the wheels is upgraded from 3.11.4 to 3.12.4 (#658).
• The wheels for Python 3.11+ are now distributed on PyPI as a single ABI3 wheel per platform (#660).

Commits

• d5ce9ca RLS: v0.13.0
• 84624c0 TST: adjust test_write_read_datetime_tz_offsets_None for pandas bug (#677)
• eb85372 ENH: add list_drivers_details function (#656)
• 0847a9a BUG: fix error writing a column with mix of datetimes with and without timezo...
• 21524a6 DOC/RLS: update 0.13 changelog (#675)
• a464882 CI: force to use latest GDAL in nightly CI (#676)
• 97945d1 BLD: use Limited C API for building abi3 wheels (#661)
• 7d8423c ENH: add whether append is supported in list_drivers (#559)
• 10d5bd8 PERF: use lists instead of memoryview for short lists of field types and indi...
• 1c62bb4 Bump actions/checkout from 6 to 7 (#673)
• Additional commits viewable in compare view

Updates geopandas from 1.1.3 to 1.1.4

Release notes

Sourced from geopandas's releases.

Version 1.1.4

What's Changed

Bug fixes:

• Further hardening of to_postgis against SQL injection (#3800).
• Ensure that points generated by sample_points are not sorted along x-axis (#3773).
• Fix GeoDataFrame.explore() ignoring custom legend_kwds={"labels": ...} for categorical and boolean columns (#3496).
• More graceful handling of keep_geom_type in the overlay() function with empty input (#3745).

Full Changelog: geopandas/geopandas@v1.1.3...v1.1.4

Changelog

Sourced from geopandas's changelog.

Version 1.1.4 (June 26, 2026)

Bug fixes:

• Further hardening of to_postgis against SQL injection (#3800).
• Ensure that points generated by sample_points are not sorted along x-axis (#3773).
• Fix GeoDataFrame.explore() ignoring custom legend_kwds={"labels": ...} for categorical and boolean columns (#3496).
• More graceful handling of keep_geom_type in the overlay() function with empty input (#3745).

Commits

• 91ec4af RLS: v1.1.4
• b5d685f DOC: add changelog for 1.1.4
• 158d993 BUG: further to_postgis hardening (#3800)
• ce95930 BUG: honor legend_kwds["labels"] for categorical and boolean columns in explo...
• 22bf845 BUG: overlay with empty input handles keep geom dtype gracefully (#3745)
• 866a7f0 BUG: ensure that points from random sampling are not sorted (#3773)
• 76b16ca DOC: update Code of Conduct reporting form link (#3794)
• 3a04a5c switch to NumFOCUS Code of Conduct (#3671)
• 6fedb19 BLD: setuptools 77+ required for PEP 639 support (#3746)
• See full diff in compare view

Updates pandas from 3.0.3 to 3.0.4

Release notes

Sourced from pandas's releases.

pandas 3.0.4

We are pleased to announce the release of pandas 3.0.4. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Commits

• 8188eb1 RLS: 3.0.4 (#66079)
• bd35f15 [3.0.x] BUG: fix CoW issue in eval() (#66072)
• 6195872 [backport 3.0.x] BUG: anchor whole alternation in Series.str.match for PyArro...
• 70313be Backport PR #66051 on branch 3.0.x (BUG: fix regression in DataFrame setitem ...
• 57ed3e2 [backport 3.0.x] Bump pypa/cibuildwheel from 3.4.1 to 4.1.0 (#65934) (#66026)
• f9693fc [backport 3.0.x] BUG(pandas 3.0 regression): drop(index=...) doesn't accept N...
• 9760fff [backport 3.0.x] BUG: support for operations with custom objects / object dty...
• f03f3ab [backport 3.0.x] ENH: fallback to zoneinfo Python API (for correct tz localiz...
• 774a50d Backport PR #65066 on branch 3.0.x (BUG: escape SQL identifiers in ADBCDataba...
• 15494e8 [3.0.x] BUG: fix segfault adding non-tick DateOffset to datetime data under t...
• Additional commits viewable in compare view

Updates obstore from 0.10.1 to 0.11.0

Commits

• See full diff in compare view

Updates ruff from 0.15.18 to 0.15.20

Release notes

Sourced from ruff's releases.

0.15.20

Release Notes

Released on 2026-06-25.

Preview features

• Allow human-readable names in rule selectors (#25887)
• Emit a warning instead of an error for unknown rule selectors (#26113)
• Match noqa shebang handling in ruff:ignore comments (#26286)
• [ruff] Remove pytest-fixture-autouse (RUF076) (#26240, #26371)

Documentation

• Add versioning sections to custom crate READMEs (#26317)
• Update ruff_python_parser README for crates.io (#26315)
• [perflint] Clarify that PERF402 applies to any iterable (#26242)

Contributors

• @​dhruvmanila
• @​MichaReiser
• @​ntBre
• @​trilamsr

Install ruff 0.15.20

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/ruff/releases/download/0.15.20/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

powershell -ExecutionPolicy Bypass -c "irm https://releases.astral.sh/github/ruff/releases/download/0.15.20/ruff-installer.ps1 | iex"

Download ruff 0.15.20

File	Platform	Checksum
ruff-aarch64-apple-darwin.tar.gz	Apple Silicon macOS	checksum
ruff-x86_64-apple-darwin.tar.gz	Intel macOS	checksum
ruff-aarch64-pc-windows-msvc.zip	ARM64 Windows	checksum
ruff-i686-pc-windows-msvc.zip	x86 Windows	checksum
ruff-x86_64-pc-windows-msvc.zip	x64 Windows	checksum
ruff-aarch64-unknown-linux-gnu.tar.gz	ARM64 Linux	checksum
ruff-i686-unknown-linux-gnu.tar.gz	x86 Linux	checksum

... (truncated)

Changelog

Sourced from ruff's changelog.

0.15.20

Released on 2026-06-25.

Preview features

• Allow human-readable names in rule selectors (#25887)
• Emit a warning instead of an error for unknown rule selectors (#26113)
• Match noqa shebang handling in ruff:ignore comments (#26286)
• [ruff] Remove pytest-fixture-autouse (RUF076) (#26240, #26371)

Documentation

• Add versioning sections to custom crate READMEs (#26317)
• Update ruff_python_parser README for crates.io (#26315)
• [perflint] Clarify that PERF402 applies to any iterable (#26242)

Contributors

• @​dhruvmanila
• @​MichaReiser
• @​ntBre
• @​trilamsr

0.15.19

Released on 2026-06-23.

Preview features

• Support human-readable names when hovering suppression comments and in code actions (#26114)

Bug fixes

• Fall back to default settings when editor-only settings are invalid (#26244)
• Fix panic when inserting text at a notebook cell boundary (#26111)

Rule changes

• [pylint] Update fix suggestions for __floor__, __trunc__, __length_hint__, and __matmul__ variants (PLC2801) (#26239)

Performance

• Avoid allocating when parsing single string literals (#26200)
• Avoid reallocating singleton call arguments (#26223)
• Lazily create source files for lint diagnostics (#26226)
• Optimize formatter text width and indentation (#26236)
• Reserve capacity for builtin bindings (#26229)
• Skip repeated-key checks for singleton dictionaries (#26228)
• Use ArrayVec for qualified name segments (#26224)

... (truncated)

Commits

• f82a36b Bump 0.15.20 (#26376)
• af32943 Improve the summarise-ecosystem-results skill (#26378)
• 485ebab Remove RUF076 name from schema (#26371)
• ef81835 [ty] Implement rust-analyzer's "Click for full compiler diagnostic" feature (...
• 572b31e [ruff] Remove pytest-fixture-autouse (RUF076) (#26240)
• f703f21 Allow human-readable names in rule selectors (#25887)
• 0d726b2 [ty] Reuse equality semantics for membership compatibility (#25955)
• dbe6e98 [ty] Infer definite equality comparison results (#26337)
• e700ea3 [ty] Prove TypedDict structural patterns exhaustive (#26285)
• 6a0d2ec [ty] Widen inferred class-valued instance attributes (#26338)
• Additional commits viewable in compare view

Updates types-geopandas from 1.1.3.20260518 to 1.1.4.20260628

Commits

• See full diff in compare view

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[dependabot]

Looks like these dependencies are updatable in another way, so this is no longer needed.