diff --git a/.github/workflows/python-ci.yml b/.github/workflows/python-ci.yml new file mode 100644 index 0000000..3e283ce --- /dev/null +++ b/.github/workflows/python-ci.yml @@ -0,0 +1,52 @@ +name: Python + +on: + push: + branches: + - main + pull_request: + +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true + +jobs: + lint-test: + name: Lint and Test + runs-on: ubuntu-latest + defaults: + run: + working-directory: python + steps: + - uses: actions/checkout@v5 + + - name: Install uv + uses: astral-sh/setup-uv@v6 + + - name: Install Rust + uses: dtolnay/rust-toolchain@stable + with: + components: rustfmt, clippy + + - uses: Swatinem/rust-cache@v2 + + - name: Cargo fmt + run: cargo fmt --all -- --check + + - name: "clippy --all" + run: cargo clippy --all --all-features --tests -- -D warnings + + - name: "cargo check" + run: cargo check --all --all-features + + - name: uv sync + working-directory: python + run: uv sync --no-install-package zarr-datafusion-internal + + - name: "Maturin develop" + run: | + uv run --no-project maturin develop --uv + + - name: Run pytest + working-directory: python + run: uv run --no-project pytest diff --git a/.github/workflows/rust-ci.yml b/.github/workflows/rust-ci.yml index f38e8cc..1b724be 100644 --- a/.github/workflows/rust-ci.yml +++ b/.github/workflows/rust-ci.yml @@ -6,12 +6,16 @@ on: - main pull_request: +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true + jobs: lint-test: name: Lint and Test runs-on: ubuntu-latest steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v5 - name: Install Rust uses: dtolnay/rust-toolchain@stable diff --git a/python/Cargo.lock b/python/Cargo.lock index 4e6c263..9e63220 100644 --- a/python/Cargo.lock +++ b/python/Cargo.lock @@ -422,28 +422,6 @@ dependencies = [ "pin-project-lite", ] -[[package]] -name = "async-stream" -version = "0.3.6" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0b5a71a6f37880a80d1d7f19efd781e4b5de42c88f0722cc13bcb6cc2cfe8476" -dependencies = [ - "async-stream-impl", - "futures-core", - "pin-project-lite", -] - -[[package]] -name = "async-stream-impl" -version = "0.3.6" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c7c24de15d275a1ecfd47a380fb4d5ec9bfe0933f309ed5e705b775596a3574d" -dependencies = [ - "proc-macro2", - "quote", - "syn 2.0.106", -] - [[package]] name = "async-trait" version = "0.1.89" @@ -883,9 +861,9 @@ dependencies = [ [[package]] name = "datafusion" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4016a135c11820d9c9884a1f7924d5456c563bd3657b7d691a6e7b937a452df7" +checksum = "fc6759cf9ef57c5c469e4027ac4b4cfa746e06a0f5472c2b922b6a403c2a64c4" dependencies = [ "arrow", "arrow-ipc", @@ -938,9 +916,9 @@ dependencies = [ [[package]] name = "datafusion-catalog" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1721d3973afeb8a0c3f235a79101cc61e4a558dd3f02fdc9ae6c61e882e544d9" +checksum = "8a1c48fc7e6d62590d45f7be7c531980b8ff091d1ab113a9ddf465bef41e4093" dependencies = [ "arrow", "async-trait", @@ -964,9 +942,9 @@ dependencies = [ [[package]] name = "datafusion-catalog-listing" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "44841d3efb0c89c6a5ac6fde5ac61d4f2474a2767f170db6d97300a8b4df8904" +checksum = "3db1266da115de3ab0b2669fc027d96cf0ff777deb3216d52c74b528446ccdd6" dependencies = [ "arrow", "async-trait", @@ -987,9 +965,9 @@ dependencies = [ [[package]] name = "datafusion-common" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eabb89b9d1ea8198d174b0838b91b40293b780261d694d6ac59bd20c38005115" +checksum = "ad4eb2a48ca10fa1e1a487a28a5bf080e31efac2d4bf12bb7e92c2d9ea4f35e5" dependencies = [ "ahash", "arrow", @@ -1012,9 +990,9 @@ dependencies = [ [[package]] name = "datafusion-common-runtime" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f03fe3936f978fe8e76776d14ad8722e33843b01d81d11707ca72d54d2867787" +checksum = "a0422ee64d5791599c46b786063e695f7699fadd3a12ad25038cb3094d05886a" dependencies = [ "futures", "log", @@ -1023,9 +1001,9 @@ dependencies = [ [[package]] name = "datafusion-datasource" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4543216d2f4fc255780a46ae9e062e50c86ac23ecab6718cc1ba3fe4a8d5a8f2" +checksum = "904c2e1089b3ccf10786f2dae12bc560fda278e4194a8917c5844d2e8c212818" dependencies = [ "arrow", "async-compression", @@ -1060,9 +1038,9 @@ dependencies = [ [[package]] name = "datafusion-datasource-csv" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8ab662d4692ca5929ce32eb609c6c8a741772537d98363b3efb3bc68148cd530" +checksum = "8336a805c42ef4e359daaad142ddc53649f23c7e934c117d8516816afe6b7a3d" dependencies = [ "arrow", "async-trait", @@ -1085,9 +1063,9 @@ dependencies = [ [[package]] name = "datafusion-datasource-json" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7dad4492ba9a2fca417cb211f8f05ffeb7f12a1f0f8e5bdcf548c353ff923779" +checksum = "c691b1565e245ea369bc8418b472a75ea84c2ad2deb61b1521cfa38319a9cd47" dependencies = [ "arrow", "async-trait", @@ -1110,9 +1088,9 @@ dependencies = [ [[package]] name = "datafusion-datasource-parquet" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2925432ce04847cc09b4789a53fc22b0fdf5f2e73289ad7432759d76c6026e9e" +checksum = "f9f7576ceb5974c5f6874d7f2a5ebfeb58960a920da64017def849e0352fe2d8" dependencies = [ "arrow", "async-trait", @@ -1143,15 +1121,15 @@ dependencies = [ [[package]] name = "datafusion-doc" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b71f8c2c0d5c57620003c3bf1ee577b738404a7fd9642f6cf73d10e44ffaa70f" +checksum = "9dde7c10244f3657fc01eef8247c0b2b20eae4cf6439a0ebb27322f32026d6b8" [[package]] name = "datafusion-execution" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "aa51cf4d253927cb65690c05a18e7720cdda4c47c923b0dd7d641f7fcfe21b14" +checksum = "5143fc795cef959b6d5271b2e8f1120382fe929fc4bd027c7d7b993f5352ef7e" dependencies = [ "arrow", "async-trait", @@ -1169,9 +1147,9 @@ dependencies = [ [[package]] name = "datafusion-expr" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4a347435cfcd1de0498c8410d32e0b1fc3920e198ce0378f8e259da717af9e0f" +checksum = "63e826296bc5f5d0af3e39c1af473d4091ac6a152a5be2f80c256f0182938428" dependencies = [ "arrow", "async-trait", @@ -1191,9 +1169,9 @@ dependencies = [ [[package]] name = "datafusion-expr-common" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4e73951bdf1047d7af212bb11310407230b4067921df648781ae7f7f1241e87e" +checksum = "9096732d0d8862d1950ca70324fe91f9dee3799eeb0db53ef452bdb573484db6" dependencies = [ "arrow", "datafusion-common", @@ -1226,9 +1204,9 @@ dependencies = [ [[package]] name = "datafusion-functions" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a3b181e79552d764a2589910d1e0420ef41b07ab97c3e3efdbce612b692141e7" +checksum = "3f362c78ac283e64fd3976e060c1a8a57d5f4dcf844a6b6bd2eb320640a1572e" dependencies = [ "arrow", "arrow-buffer", @@ -1255,9 +1233,9 @@ dependencies = [ [[package]] name = "datafusion-functions-aggregate" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b7e8cfb3b3f9e48e756939c85816b388264bed378d166a993fb265d800e1c83c" +checksum = "22e2a80a80145a796ae3f02eb724ac516178556aec864fe89f6ab3741a4cd249" dependencies = [ "ahash", "arrow", @@ -1276,9 +1254,9 @@ dependencies = [ [[package]] name = "datafusion-functions-aggregate-common" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9501537e235e4e86828bc8bf4e22968c1514c2cb4c860b7c7cf7dc99e172d43c" +checksum = "d7dcca2fe7c33409e9ab3f950366aa4cba5db6175a09599fdb658ad9f2cc4296" dependencies = [ "ahash", "arrow", @@ -1289,9 +1267,9 @@ dependencies = [ [[package]] name = "datafusion-functions-nested" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6cbc3ecce122389530af091444e923f2f19153c38731893f5b798e19a46fbf86" +checksum = "d1b298733377f3ec8c2868c75b5555b15396d9c13e36c5fda28e80feee34e3ed" dependencies = [ "arrow", "arrow-ord", @@ -1311,9 +1289,9 @@ dependencies = [ [[package]] name = "datafusion-functions-table" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a8ad370763644d6626b15900fe2268e7d55c618fadf5cff3a7f717bb6fb50ec1" +checksum = "2fa4a380ca362eb0fbd33093e8ca6b7a31057616c7e6ee999b87a4ad3c7c0b3f" dependencies = [ "arrow", "async-trait", @@ -1327,9 +1305,9 @@ dependencies = [ [[package]] name = "datafusion-functions-window" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "44b14fc52c77461f359d1697826a4373c7887a6adfca94eedc81c35decd0df9f" +checksum = "9068fc85b8e187c706427794d79bb7ee91132b6b192cb7b18e650a5f7c5c1340" dependencies = [ "arrow", "datafusion-common", @@ -1345,9 +1323,9 @@ dependencies = [ [[package]] name = "datafusion-functions-window-common" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "851c80de71ff8bc9be7f8478f26e8060e25cab868a36190c4ebdaacc72ceade1" +checksum = "b2f80ec56e177d166269556649be817a382a374642872df4ca48cf9be3d09b3a" dependencies = [ "datafusion-common", "datafusion-physical-expr-common", @@ -1355,9 +1333,9 @@ dependencies = [ [[package]] name = "datafusion-macros" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "386208ac4f475a099920cdbe9599188062276a09cb4c3f02efdc54e0c015ab14" +checksum = "c4868fe261ba01e462033eff141e90453b7630722cad6420fddd81ebb786f6e2" dependencies = [ "datafusion-expr", "quote", @@ -1366,9 +1344,9 @@ dependencies = [ [[package]] name = "datafusion-optimizer" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b20ff1cec8c23fbab8523e2937790fb374b92d3b273306a64b7d8889ff3b8614" +checksum = "40ed8c51b5c37c057e5c7d5945ed807f1cecfba003bdb1a4c3036595dda287c7" dependencies = [ "arrow", "chrono", @@ -1386,9 +1364,9 @@ dependencies = [ [[package]] name = "datafusion-physical-expr" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "945659046d27372e38e8a37927f0b887f50846202792063ad6b197c6eaf9fb5b" +checksum = "f678f5734147446e1adbee63be4b244c8f0e9cbd5c41525004ace3730190d03e" dependencies = [ "ahash", "arrow", @@ -1409,9 +1387,9 @@ dependencies = [ [[package]] name = "datafusion-physical-expr-adapter" -version = "50.0.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2da3a7429a555dd5ff0bec4d24bd5532ec43876764088da635cad55b2f178dc2" +checksum = "086877d4eca538e9cd1f28b917db0036efe0ad8b4fb7c702f520510672032c8d" dependencies = [ "arrow", "datafusion-common", @@ -1424,9 +1402,9 @@ dependencies = [ [[package]] name = "datafusion-physical-expr-common" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "218d60e94d829d8a52bf50e694f2f567313508f0c684af4954def9f774ce3518" +checksum = "f5c5d17f6a4f28f9849ee3449bb9b83406a718e4275c218bf37ca247ee123779" dependencies = [ "ahash", "arrow", @@ -1438,9 +1416,9 @@ dependencies = [ [[package]] name = "datafusion-physical-optimizer" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f96a93ebfd35cc52595e85c3100730a5baa6def39ff5390d6f90d2f3f89ce53f" +checksum = "ab9fb8b3fba2634d444e0177862797dc1231e0e20bc4db291a15d39c0d4136c3" dependencies = [ "arrow", "datafusion-common", @@ -1458,9 +1436,9 @@ dependencies = [ [[package]] name = "datafusion-physical-plan" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3f6516a95911f763f05ec29bddd6fe987a0aa987409c213eac12faa5db7f3c9c" +checksum = "d5086cb2e579270173ff0eb38d60ba2a081f1d422a743fa673f6096920950eb5" dependencies = [ "ahash", "arrow", @@ -1516,9 +1494,9 @@ dependencies = [ [[package]] name = "datafusion-pruning" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "40befe63ab3bd9f3b05d02d13466055aa81876ad580247b10bdde1ba3782cebb" +checksum = "1f84b866d906118c320459f30385048aeedbe36ac06973d3e4fa0cc5d60d722c" dependencies = [ "arrow", "arrow-schema", @@ -1534,9 +1512,9 @@ dependencies = [ [[package]] name = "datafusion-session" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "26aa059f478e6fa31158e80e4685226490b39f67c2e357401e26da84914be8b2" +checksum = "3820062b9dd2846954eeb844ff9fe3662977b7d2d74947647c779fabfa502508" dependencies = [ "arrow", "async-trait", @@ -1558,9 +1536,9 @@ dependencies = [ [[package]] name = "datafusion-sql" -version = "50.1.0" +version = "50.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ea3ce7cb3c31bfc6162026f6f4b11eb5a3a83c8a6b88d8b9c529ddbe97d53525" +checksum = "375232baa851b2e9d09fcbe8906141a0ec6e0e058addc5565e0d3d790bb9d51d" dependencies = [ "arrow", "bigdecimal", @@ -1849,9 +1827,9 @@ dependencies = [ [[package]] name = "geoarrow-array" -version = "0.5.0" +version = "0.6.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "73241361a33c1339883aa98d0655bd0dad53f760b9fe92ffbd1d5bbd87dc07bc" +checksum = "36490f9fbab061752290ac5ebce2bc9bab82ea6fdfcfc9ac3d030d44a98a1a7d" dependencies = [ "arrow-array", "arrow-buffer", @@ -1865,9 +1843,9 @@ dependencies = [ [[package]] name = "geoarrow-schema" -version = "0.5.0" +version = "0.6.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f5ebd2cbf841a1062d3521c2b2de7e819bb201b30f23381f872e62b9430b82af" +checksum = "278e963401cfb23b4f81b212605b33b342ab73741d39b80de51cc7028d6d3af4" dependencies = [ "arrow-schema", "geo-traits", @@ -3275,16 +3253,6 @@ dependencies = [ "link-cplusplus", ] -[[package]] -name = "socket2" -version = "0.6.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "233504af464074f9d066d7b5416c5f9b894a5862a6506e306f7b816cdd6f1807" -dependencies = [ - "libc", - "windows-sys 0.59.0", -] - [[package]] name = "sqlparser" version = "0.58.0" @@ -3501,9 +3469,7 @@ dependencies = [ "mio", "pin-project-lite", "slab", - "socket2", "tokio-macros", - "windows-sys 0.59.0", ] [[package]] @@ -3517,30 +3483,6 @@ dependencies = [ "syn 2.0.106", ] -[[package]] -name = "tokio-stream" -version = "0.1.17" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eca58d7bba4a75707817a2c44174253f9236b2d5fbd055602e9d5c07c139a047" -dependencies = [ - "futures-core", - "pin-project-lite", - "tokio", -] - -[[package]] -name = "tokio-test" -version = "0.4.4" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2468baabc3311435b55dd935f702f42cd1b8abb7e754fb7dfb16bd36aa88f9f7" -dependencies = [ - "async-stream", - "bytes", - "futures-core", - "tokio", - "tokio-stream", -] - [[package]] name = "tokio-util" version = "0.7.16" @@ -4130,23 +4072,15 @@ dependencies = [ "arrow", "arrow-array", "arrow-schema", - "async-stream", "async-trait", - "bytes", "datafusion", "futures", - "futures-util", "geoarrow-array", "geoarrow-schema", - "itertools", "object_store", "thiserror 2.0.17", - "tokio", - "tokio-test", - "wkb", "zarrs", "zarrs_filesystem", - "zarrs_metadata", "zarrs_object_store", "zarrs_storage", ] @@ -4162,13 +4096,14 @@ dependencies = [ [[package]] name = "zarrs" -version = "0.22.2" +version = "0.22.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ad12c7c2b91d2f6871f21efc28fd5a302809d7246974fdd99ef55bd3b16b78a0" +checksum = "b1a0df338ace5f033fdee03928305688f45cab9fcc9948b0e9ab9e481667e5f9" dependencies = [ "async-generic", "async-lock", "async-trait", + "base64", "blosc-src", "bytemuck", "bytes", @@ -4182,6 +4117,7 @@ dependencies = [ "inventory", "itertools", "itoa", + "log", "lru", "moka", "ndarray", @@ -4241,9 +4177,9 @@ dependencies = [ [[package]] name = "zarrs_metadata" -version = "0.6.0" +version = "0.6.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "708b938e5af9e6564d7135fb2d1e05c0deff3d7124694ff6822aa01614a6c991" +checksum = "8cad059cebcb7a23fb72ffb5b138e693932a302b956d64c94c5873b3a3e63316" dependencies = [ "derive_more", "half", @@ -4255,12 +4191,13 @@ dependencies = [ [[package]] name = "zarrs_metadata_ext" -version = "0.2.0" +version = "0.2.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d4fb56ca32761b64c4b2a3db1097fbd29adfb321a129279b1db99be0a61d361a" +checksum = "c8cf0bbbc50afccba70216ffe139386cd033dd8c231887482aa534587bd73b9a" dependencies = [ "derive_more", "half", + "log", "monostate", "num", "serde", @@ -4294,9 +4231,9 @@ dependencies = [ [[package]] name = "zarrs_registry" -version = "0.1.5" +version = "0.1.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ebe4e55522eeb87eefab89017bef78cb823f86861fd8a3cc12e9f6538c348d57" +checksum = "143464597b85ee8ba0c59d52b28498f78fdebe44bc88ce8140d09c6569c9c3e8" dependencies = [ "regex", ] diff --git a/python/pyproject.toml b/python/pyproject.toml index a87c3b5..3bd8d9f 100644 --- a/python/pyproject.toml +++ b/python/pyproject.toml @@ -19,4 +19,4 @@ module-name = "zarr_datafusion_internal._rust" python-source = "python" [tool.uv] -dev-dependencies = ["ipykernel"] +dev-dependencies = ["ipykernel", "maturin", "pytest"] diff --git a/python/src/table.rs b/python/src/table.rs index 20aa356..9422a57 100644 --- a/python/src/table.rs +++ b/python/src/table.rs @@ -12,7 +12,7 @@ pub struct PyZarrTable(Arc); impl PyZarrTable { #[new] pub fn new(zarr_path: String) -> PyResult { - let table_provider = ZarrTableProvider::new(zarr_path).map_err(|e| { + let table_provider = 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