Copy notebooks to the book

Author: jakubbober

fdm-jupyter-book/notebooks/01_vib/vib_undamped.ipynb

@@ -308,7 +308,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "When this function resides in the file [`wave1D_u0.py`](src-wave/wave1D/wave1D_u0.py), one can run\n",
+    "When this function resides in the file [`wave1D_u0.py`](https://github.com/devitocodes/devito_book/blob/master/fdm-devito-notebooks/02_wave/src-wave/wave1D/wave1D_u0.py), one can run\n",
     "pytest to check that all test functions with names `test_*()`\n",
     "in this file work:"
    ]
@@ -718,7 +718,7 @@
     "`n` can be divided by 13 without a remainder. That is, the `if` test\n",
     "is true when `n` equals $0, 13, 26, 39, ..., 780, 801$. The associated\n",
     "code is included in the `plot_u` function, inside the `viz` function,\n",
-    "in the file [`wave1D_u0.py`](src-wave/wave1D/wave1D_u0.py).\n",
+    "in the file [`wave1D_u0.py`](https://github.com/devitocodes/devito_book/blob/master/fdm-devito-notebooks/02_wave/src-wave/wave1D/wave1D_u0.py).\n",
     "\n",
     "## Running a case\n",
     "<div id=\"wave:pde1:guitar:data\"></div>\n",
@@ -806,7 +806,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "The associated program has the name [`wave1D_u0.py`](src-wave/wave1D/wave1D_u0.py). Run\n",
+    "The associated program has the name [`wave1D_u0.py`](https://github.com/devitocodes/devito_book/blob/master/fdm-devito-notebooks/02_wave/src-wave/wave1D/wave1D_u0.py). Run\n",
     "the program and watch the [movie of the vibrating string](mov-wave/guitar_C0.8/movie.html).\n",
     "The string should ideally consist of straight segments, but these are\n",
     "somewhat wavy due to numerical approximation. Run the case with the\n",
@@ -2586,9 +2586,9 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.3"
+   "version": "3.8.2"
   }
  },
  "nbformat": 4,
  "nbformat_minor": 4
-}
+}

fdm-jupyter-book/notebooks/02_wave/wave1D_prog.ipynb

@@ -243,7 +243,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": 4,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -252,7 +252,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 21,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -317,7 +317,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": 1,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -683,7 +683,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -765,7 +765,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": 9,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -790,7 +790,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 11,
+   "execution_count": 10,
    "metadata": {},
    "outputs": [
     {
@@ -825,7 +825,7 @@
     "run, and it can be very difficult to spot bugs through averaged statistical\n",
     "quantities.\n",
     "\n",
-    "A full test suite for this notebook, along with the rest of the functions for random walks, can be found in [`random_walk.py`](src-diffu/random_walk.py).\n",
+    "A full test suite for this notebook, along with the rest of the functions for random walks, can be found in [`random_walk.py`](https://github.com/devitocodes/devito_book/blob/master/fdm-devito-notebooks/03_diffu/src-diffu/random_walk.py).\n",
     "\n",
     "## Demonstration of multiple walks\n",
     "\n",
@@ -1315,7 +1315,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.3"
+   "version": "3.8.2"
   }
  },
  "nbformat": 4,

fdm-jupyter-book/notebooks/03_diffu/diffu_rw.ipynb

@@ -670,7 +670,7 @@
    "source": [
     "A special scheme is needed to compute $u^1$, but we leave that problem for\n",
     "now. Anyway, this special scheme can be found in \n",
-    "[`advec1D.py`](src-advec/advec1D.py).\n",
+    "[`advec1D.py`](https://github.com/devitocodes/devito_book/blob/master/fdm-devito-notebooks/04_advec/src-advec/advec1D.py).\n",
     "\n",
     "### Implementation\n",
     "\n",
@@ -1405,7 +1405,7 @@
    "metadata": {},
    "source": [
     "The complete code is found in the file\n",
-    "[`advec1D.py`](src-advec/advec1D.py).\n",
+    "[`advec1D.py`](https://github.com/devitocodes/devito_book/blob/master/fdm-devito-notebooks/04_advec/src-advec/advec1D.py).\n",
     "\n",
     "## A Crank-Nicolson discretization in time and centered differences in space\n",
     "<div id=\"advec:1D:CN\"></div>\n",