update for gmsh to output correct legacy format

Author: tcaduser

doc/bjtexample.pdf

@@ -66,16 +66,16 @@ \subsection{Meshing and Refinement}
 \begin{minipage}{\textwidth}
 The steps are:
 \begin{verbatim}
-gmsh -2 bjt.geo 
-devsim bjt_refine.py 
-gmsh -2 bjt.geo -bgm ./bjt_bgmesh.pos 
-devsim bjt_refine.py 
-gmsh -2 bjt.geo -bgm ./bjt_bgmesh.pos 
-devsim bjt_refine.py 
-gmsh -2 bjt.geo -bgm ./bjt_bgmesh.pos 
-devsim bjt_refine.py 
-gmsh -2 bjt.geo -bgm ./bjt_bgmesh.pos 
-devsim bjt_refine.py 
+gmsh -format msh2 -2 bjt.geo
+devsim bjt_refine.py
+gmsh -format msh2 -2 bjt.geo -bgm ./bjt_bgmesh.pos
+devsim bjt_refine.py
+gmsh -format msh2 -2 bjt.geo -bgm ./bjt_bgmesh.pos
+devsim bjt_refine.py
+gmsh -format msh2 -2 bjt.geo -bgm ./bjt_bgmesh.pos
+devsim bjt_refine.py
+gmsh -format msh2 -2 bjt.geo -bgm ./bjt_bgmesh.pos
+devsim bjt_refine.py
 \end{verbatim}
 \end{minipage}
 \\~\\
@@ -112,7 +112,7 @@ \subsubsection{Small-signal ac sweep}
 \end{verbatim}
 
 \subsection{Visualization}
-The \texttt{data/} directory contains scripts used to generate the plots used for publication.  A script was written to collect the data from the simulations to create plots using \texttt{matplotlib}.  This script is in the \texttt{data/} directory and is called \texttt{prep.sh}.  
+The \texttt{data/} directory contains scripts used to generate the plots used for publication.  A script was written to collect the data from the simulations to create plots using \texttt{matplotlib}.  This script is in the \texttt{data/} directory and is called \texttt{prep.sh}.
 
 \begin{tabular}{ll}
 \texttt{ft.py} & Small-signal ft simulation\\

doc/bjtexample.tex

@@ -1,20 +1,16 @@
 # get the initial coarse mesh
 # create the background mesh
 # use the background mesh
-gmsh -2 bjt.geo 
-python bjt_refine.py 
-gmsh -2 bjt.geo -bgm ./bjt_bgmesh.pos 
-python bjt_refine.py 
-gmsh -2 bjt.geo -bgm ./bjt_bgmesh.pos 
-python bjt_refine.py 
-gmsh -2 bjt.geo -bgm ./bjt_bgmesh.pos 
-python bjt_refine.py 
-gmsh -2 bjt.geo -bgm ./bjt_bgmesh.pos 
-python bjt_refine.py 
+gmsh -format 'msh2' -2 bjt.geo
+python bjt_refine.py
+gmsh -format 'msh2' -2 bjt.geo -bgm ./bjt_bgmesh.pos
+python bjt_refine.py
+gmsh -format 'msh2' -2 bjt.geo -bgm ./bjt_bgmesh.pos
+python bjt_refine.py
+gmsh -format 'msh2' -2 bjt.geo -bgm ./bjt_bgmesh.pos
+python bjt_refine.py
+gmsh -format 'msh2' -2 bjt.geo -bgm ./bjt_bgmesh.pos
+python bjt_refine.py
 
 #visualize
 visit bjt_refine.tec
-
-#if using tcsh
-export SHELL=/bin/bash
-parallel --gnu < simsbatch.txt