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[v2-dev] SpatialData loader and writer #17

Closed

enric-bazz wants to merge 11 commits into

dpeerlab:release/v2-devdpeerlab/segger:release/v2-devfrom

enric-bazz:sd-readerenric-bazz/segger:sd-readerCopy head branch name to clipboard

Conversation Commits11 (11)Checks Files changed

Closed

[v2-dev] SpatialData loader and writer #17
enric-bazz wants to merge 11 commits into
dpeerlab:release/v2-devfrom
enric-bazz:sd-reader

Commits

Commits on Feb 26, 2026

Adapt to currents SpatialData APIs
enric-bazz
committed
Set ovewrite based on output path
enric-bazz
committed
Add 'is_gene' column option to filter Xenium transcripts
enric-bazz
committed
Set ovewrite based on output path
enric-bazz
committed
Fix SpatialData loader preprocessing and dtypes
enric-bazz
committed
Merge branch 'sd-writer' into sd-reader
enric-bazz
committed

Commits on Feb 27, 2026

Add CosMx preprocess and fixes for old Xenium compatibility
enric-bazz
committed
Fix ME gene duplicates filtering logic
enric-bazz
committed
Merge branch 'mu-genes-filtering' into sd-reader
enric-bazz
committed

Commits on Mar 8, 2026

Comments on model echo
enric-bazz
committed
Add spatialdata table parsing
enric-bazz
committed

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