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314 lines (270 loc) · 13.8 KB
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import csv
import datetime
import os
import tempfile
import pytest
from conftest import getTimeSeriesData
import duckdb
import pandas as pd
class TestToCSV:
def test_basic_to_csv(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame({"a": [5, 3, 23, 2], "b": [45, 234, 234, 2]})
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name)
csv_rel = duckdb.read_csv(temp_file_name)
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_sep(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame({"a": [5, 3, 23, 2], "b": [45, 234, 234, 2]})
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, sep=",")
csv_rel = duckdb.read_csv(temp_file_name, sep=",")
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_na_rep(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame({"a": [5, None, 23, 2], "b": [45, 234, 234, 2]})
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, na_rep="test")
csv_rel = duckdb.read_csv(temp_file_name, na_values="test")
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_header(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame({"a": [5, None, 23, 2], "b": [45, 234, 234, 2]})
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name)
csv_rel = duckdb.read_csv(temp_file_name)
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_quotechar(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame({"a": ["'a,b,c'", None, "hello", "bye"], "b": [45, 234, 234, 2]})
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, quotechar="'", sep=",")
csv_rel = duckdb.read_csv(temp_file_name, sep=",", quotechar="'")
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_escapechar(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame(
{
"c_bool": [True, False],
"c_float": [1.0, 3.2],
"c_int": [42, None],
"c_string": ["a", "b,c"],
}
)
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, quotechar='"', escapechar="!")
csv_rel = duckdb.read_csv(temp_file_name, quotechar='"', escapechar="!")
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_date_format(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame(getTimeSeriesData())
dt_index = df.index
df = pd.DataFrame({"A": dt_index, "B": dt_index.shift(1)}, index=dt_index)
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, date_format="%Y%m%d")
csv_rel = duckdb.read_csv(temp_file_name, date_format="%Y%m%d")
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_timestamp_format(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
data = [datetime.time(hour=23, minute=1, second=34, microsecond=234345)]
df = pd.DataFrame({"0": pd.Series(data=data, dtype="object")})
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, timestamp_format="%m/%d/%Y")
csv_rel = duckdb.read_csv(temp_file_name, timestamp_format="%m/%d/%Y")
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_quoting_off(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame({"a": ["string1", "string2", "string3"]})
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, quoting=None)
csv_rel = duckdb.read_csv(temp_file_name)
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_quoting_on(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame({"a": ["string1", "string2", "string3"]})
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, quoting="force")
csv_rel = duckdb.read_csv(temp_file_name)
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_quoting_quote_all(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame({"a": ["string1", "string2", "string3"]})
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, quoting=csv.QUOTE_ALL)
csv_rel = duckdb.read_csv(temp_file_name)
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_encoding_incorrect(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame({"a": ["string1", "string2", "string3"]})
rel = duckdb.from_df(df)
with pytest.raises(
duckdb.InvalidInputException, match="Invalid Input Error: The only supported encoding option is 'UTF8"
):
rel.to_csv(temp_file_name, encoding="nope")
def test_to_csv_encoding_correct(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame({"a": ["string1", "string2", "string3"]})
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, encoding="UTF-8")
csv_rel = duckdb.read_csv(temp_file_name)
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_compression_gzip(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame({"a": ["string1", "string2", "string3"]})
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, compression="gzip")
csv_rel = duckdb.read_csv(temp_file_name, compression="gzip")
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_partition(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame(
{
"c_category": ["a", "a", "b", "b"],
"c_bool": [True, False, True, True],
"c_float": [1.0, 3.2, 3.0, 4.0],
"c_int": [42, None, 123, 321],
"c_string": ["a", "b,c", "e", "f"],
}
)
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, header=True, partition_by=["c_category"])
csv_rel = duckdb.sql(
f"""FROM read_csv_auto('{temp_file_name}/*/*.csv', hive_partitioning=TRUE, header=TRUE);"""
)
expected = [
(True, 1.0, 42.0, "a", "a"),
(False, 3.2, None, "b,c", "a"),
(True, 3.0, 123.0, "e", "b"),
(True, 4.0, 321.0, "f", "b"),
]
assert csv_rel.execute().fetchall() == expected
def test_to_csv_partition_with_columns_written(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame(
{
"c_category": ["a", "a", "b", "b"],
"c_bool": [True, False, True, True],
"c_float": [1.0, 3.2, 3.0, 4.0],
"c_int": [42, None, 123, 321],
"c_string": ["a", "b,c", "e", "f"],
}
)
rel = duckdb.from_df(df)
res = duckdb.sql("FROM rel order by all")
rel.to_csv(temp_file_name, header=True, partition_by=["c_category"], write_partition_columns=True)
csv_rel = duckdb.sql(
f"""FROM read_csv_auto('{temp_file_name}/*/*.csv', hive_partitioning=TRUE, header=TRUE) order by all;"""
)
assert res.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_overwrite(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame(
{
"c_category_1": ["a", "a", "b", "b"],
"c_category_2": ["c", "c", "d", "d"],
"c_bool": [True, False, True, True],
"c_float": [1.0, 3.2, 3.0, 4.0],
"c_int": [42, None, 123, 321],
"c_string": ["a", "b,c", "e", "f"],
}
)
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, header=True, partition_by=["c_category_1"]) # csv to be overwritten
rel.to_csv(temp_file_name, header=True, partition_by=["c_category_1"], overwrite=True)
csv_rel = duckdb.sql(
f"""FROM read_csv_auto('{temp_file_name}/*/*.csv', hive_partitioning=TRUE, header=TRUE);"""
)
# When partition columns are read from directory names, column order become different from original
expected = [
("c", True, 1.0, 42.0, "a", "a"),
("c", False, 3.2, None, "b,c", "a"),
("d", True, 3.0, 123.0, "e", "b"),
("d", True, 4.0, 321.0, "f", "b"),
]
assert csv_rel.execute().fetchall() == expected
def test_to_csv_overwrite_with_columns_written(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame(
{
"c_category_1": ["a", "a", "b", "b"],
"c_category_2": ["c", "c", "d", "d"],
"c_bool": [True, False, True, True],
"c_float": [1.0, 3.2, 3.0, 4.0],
"c_int": [42, None, 123, 321],
"c_string": ["a", "b,c", "e", "f"],
}
)
rel = duckdb.from_df(df)
rel.to_csv(
temp_file_name, header=True, partition_by=["c_category_1"], write_partition_columns=True
) # csv to be overwritten
rel.to_csv(
temp_file_name, header=True, partition_by=["c_category_1"], overwrite=True, write_partition_columns=True
)
csv_rel = duckdb.sql(
f"""FROM read_csv_auto('{temp_file_name}/*/*.csv', hive_partitioning=TRUE, header=TRUE) order by all;"""
)
res = duckdb.sql("FROM rel order by all")
assert res.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_overwrite_not_enabled(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame(
{
"c_category_1": ["a", "a", "b", "b"],
"c_category_2": ["c", "c", "d", "d"],
"c_bool": [True, False, True, True],
"c_float": [1.0, 3.2, 3.0, 4.0],
"c_int": [42, None, 123, 321],
"c_string": ["a", "b,c", "e", "f"],
}
)
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, header=True, partition_by=["c_category_1"])
with pytest.raises(duckdb.IOException, match="OVERWRITE"):
rel.to_csv(temp_file_name, header=True, partition_by=["c_category_1"])
def test_to_csv_per_thread_output(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
num_threads = duckdb.sql("select current_setting('threads')").fetchone()[0]
print("num_threads:", num_threads)
df = pd.DataFrame(
{
"c_category": ["a", "a", "b", "b"],
"c_bool": [True, False, True, True],
"c_float": [1.0, 3.2, 3.0, 4.0],
"c_int": [42, None, 123, 321],
"c_string": ["a", "b,c", "e", "f"],
}
)
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, header=True, per_thread_output=True)
csv_rel = duckdb.read_csv(f"{temp_file_name}/*.csv", header=True)
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_use_tmp_file(self):
temp_file_name = os.path.join(tempfile.mkdtemp(), next(tempfile._get_candidate_names())) # noqa: PTH118
df = pd.DataFrame(
{
"c_category_1": ["a", "a", "b", "b"],
"c_category_2": ["c", "c", "d", "d"],
"c_bool": [True, False, True, True],
"c_float": [1.0, 3.2, 3.0, 4.0],
"c_int": [42, None, 123, 321],
"c_string": ["a", "b,c", "e", "f"],
}
)
rel = duckdb.from_df(df)
rel.to_csv(temp_file_name, header=True) # csv to be overwritten
rel.to_csv(temp_file_name, header=True, use_tmp_file=True)
csv_rel = duckdb.read_csv(temp_file_name, header=True)
assert rel.execute().fetchall() == csv_rel.execute().fetchall()
def test_to_csv_pathlib(self, tmp_path):
file_path = tmp_path / "test.csv" # pathlib.Path
df = pd.DataFrame({"a": [5, 3, 23, 2], "b": [45, 234, 234, 2]})
rel = duckdb.from_df(df)
rel.to_csv(file_path)
assert rel.execute().fetchall() == duckdb.read_csv(file_path).execute().fetchall()
def test_to_csv_rejects_non_path(self):
df = pd.DataFrame({"a": [5, 3, 23, 2], "b": [45, 234, 234, 2]})
rel = duckdb.from_df(df)
with pytest.raises(duckdb.InvalidInputException):
rel.to_csv(123)