Add particle intensity

Added total particle intensity measure.

Author: TomSlater

ParticleSpy/ParticleAnalysis.py

@@ -96,6 +96,10 @@ def ParticleAnalysis(acquisition,parameters,particles=None,mask=np.zeros((1))):
         eccentricity = region.eccentricity
         p.set_eccentricity(eccentricity)
 
+        #Set total image intensity
+        intensity = (image*mask).sum()
+        p.set_intensity(intensity)
+        
         #Set zoneaxis
         im_smooth = filters.gaussian(np.uint16(p_im),1)
         im_zone = np.zeros_like(im_smooth)

ParticleSpy/ptcl_class.py

@@ -55,6 +55,9 @@ def set_circularity(self, circularity):
     def set_eccentricity(self,eccentricity):
         self.properties['eccentricity'] = {'value':eccentricity,'units':None}
 
+    def set_intensity(self,intensity):
+        self.properties['intensity'] = {'value':intensity,'units':None}
+        
     def set_zone(self, zone):
         self.zone = zone