Fixed some comments and descriptions in ISA profile

Author: floWetzels

rocrate_validator/profiles/isa-ro-crate/10_definedterm.ttl

@@ -35,7 +35,7 @@ isa-ro-crate:FindISAOntologyAnnotation a sh:NodeShape, validator:HiddenShape;
         sh:subject sh:this ;
         sh:predicate rdf:type ;
         sh:object isa-ro-crate:OntologyAnnotation ;
-        # The condition: need to be attached to a Study or Assay
+        # The condition: need to be attached to a Assay, Protocol, Person, or Article
         sh:condition [
             a sh:NodeShape;
             sh:name: "OntologyAnnotation is attached to an Assay, Protocol, Person, or Article" ;

rocrate_validator/profiles/isa-ro-crate/11_propertyvalue.ttl

@@ -35,10 +35,10 @@ isa-ro-crate:FindISAPropertyValue a sh:NodeShape, validator:HiddenShape;
         sh:subject sh:this ;
         sh:predicate rdf:type ;
         sh:object isa-ro-crate:PropertyValue ;
-        # The condition: need to be attached to a Study or Assay
+        # The condition: need to be attached to a Assay, Process, Protocol, Sample, Person, or Article
         sh:condition [
             a sh:NodeShape;
-            sh:name: "PropertyValue is attached to an Assay" ;
+            sh:name: "PropertyValue is attached to an Assay, Process, Protocol, Sample, Person, or Article" ;
             sh:or (
                 [
                     sh:property [

rocrate_validator/profiles/isa-ro-crate/3_process.ttl

@@ -51,34 +51,6 @@ isa-ro-crate:FindISAProcesses a sh:NodeShape, validator:HiddenShape;
     ]
 .
 
-# isa-ro-crate:FindISAProcesses a sh:NodeShape, validator:HiddenShape;
-#     sh:name "Identify ISA processes within the RO-Crate" ;
-#     sh:description "A Process has type LabProcess and is attached to a Study or Assay." ;
-#     sh:order 3 ;
-#     sh:target [
-#         a sh:SPARQLTarget ;
-#         sh:select """
-#             PREFIX bioschemas: <https://bioschemas.org/>
-#             PREFIX isa-ro-crate: <https://github.com/crs4/rocrate-validator/profiles/isa-ro-crate/>
-#             PREFIX schema: <http://schema.org/>
-
-#             SELECT ?this
-#             WHERE {
-#                 ?this a bioschemas:LabProcess .
-#                 ?assay schema:about ?this .
-#                 ?assay a isa-ro-crate:Assay .
-#             }
-#         """ ;
-#     ] ;
-#     # Expand data graph with triples from the file data entity
-#     sh:rule [
-#         a sh:TripleRule ;
-#         sh:subject sh:this ;
-#         sh:predicate rdf:type ;
-#         sh:object isa-ro-crate:Process ;
-#     ]
-# .
-
 
 
 # check process must have name

rocrate_validator/profiles/isa-ro-crate/4_protocol.ttl

@@ -35,7 +35,7 @@ isa-ro-crate:FindISAProtocols a sh:NodeShape, validator:HiddenShape;
         sh:subject sh:this ;
         sh:predicate rdf:type ;
         sh:object isa-ro-crate:Protocol ;
-        # The condition: need to be attached to a Study or Assay
+        # The condition: need to be attached to a Process
         sh:condition [
             sh:property [
                 sh:path [ sh:inversePath bioschemas-prop:executesLabProtocol ] ;

rocrate_validator/profiles/isa-ro-crate/5_sample.ttl

@@ -35,7 +35,7 @@ isa-ro-crate:FindISASamples a sh:NodeShape, validator:HiddenShape;
         sh:subject sh:this ;
         sh:predicate rdf:type ;
         sh:object isa-ro-crate:Sample ;
-        # The condition: need to be attached to a Study or Assay
+        # The condition: need to be attached to a Process
         sh:condition [
             a sh:NodeShape ;
             sh:name "Sample is attached to a process" ;

rocrate_validator/profiles/isa-ro-crate/7_person.ttl

@@ -35,7 +35,7 @@ isa-ro-crate:FindISAPerson a sh:NodeShape, validator:HiddenShape;
         sh:subject sh:this ;
         sh:predicate rdf:type ;
         sh:object isa-ro-crate:Person ;
-        # The condition: need to be attached to a Study or Assay
+        # The condition: need to be attached to a Investigation, Study, Assay, Process, or Article
         sh:condition [
             a sh:NodeShape;
             sh:name: "Person is attached to an Investigation, Study, Assay, Process, or Article" ;

rocrate_validator/profiles/isa-ro-crate/8_article.ttl

@@ -26,7 +26,7 @@
 
 isa-ro-crate:FindISAPublication a sh:NodeShape, validator:HiddenShape;
     sh:name "Identify ISA publications within the RO-Crate" ;
-    sh:description "A Publication has type ScholarlyArticle and is attached to a Study or Assay." ;
+    sh:description "A Publication has type ScholarlyArticle and is attached to a Study or Investigation." ;
     sh:targetClass schema:ScholarlyArticle ;
     sh:order 2 ;
     # Expand data graph with triples from the file data entity
@@ -35,7 +35,7 @@ isa-ro-crate:FindISAPublication a sh:NodeShape, validator:HiddenShape;
         sh:subject sh:this ;
         sh:predicate rdf:type ;
         sh:object isa-ro-crate:Article ;
-        # The condition: need to be attached to a Study or Assay
+        # The condition: need to be attached to a Study or Investigation
         sh:condition [
             sh:property [
                 sh:path [ sh:inversePath schema:citation ] ;

rocrate_validator/profiles/isa-ro-crate/9_comment.ttl

@@ -35,7 +35,7 @@ isa-ro-crate:FindISAComment a sh:NodeShape, validator:HiddenShape;
         sh:subject sh:this ;
         sh:predicate rdf:type ;
         sh:object isa-ro-crate:Comment ;
-        # The condition: need to be attached to a Study or Assay
+        # The condition: need to be attached to a Investigation, Study, Assay, Protocol, Data file, or Publication
         sh:condition [
             sh:property [
                 sh:path [ sh:inversePath schema:comment ] ;