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elichadelichad
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add extra crates to check context
1 parent ec02130 commit fd7046d

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Lines changed: 350 additions & 13 deletions

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‎tests/data/crates/invalid/five_safes_crate/context_multiple_wrong_version/ro-crate-metadata.json‎

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{
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"@context": ["https://w3id.org/ro/crate/1.1/context", "http://schema.org", {"test": "http://schema.org/test"}],
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"@graph": [
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{
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"@type": "CreativeWork",
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"@id": "ro-crate-metadata.json",
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"about": {
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"@id": "./"
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},
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"conformsTo": {
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"@id": "https://w3id.org/ro/crate/1.2"
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}
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},
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{
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"@id": "./",
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"@type": "Dataset",
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"name": "5-Safe RO-Crate Request",
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"description": "example 5-Safe RO-Crate request metadata for testing",
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"license": "Apache-2.0",
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"datePublished": "2025-09-20T14:38:00+00:00",
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"conformsTo": {
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"@id": "https://w3id.org/5s-crate/0.4"
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},
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"hasPart": [
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{
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"@id": "https://workflowhub.eu/workflows/289?version=1"
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},
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{
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"@id": "input1.txt"
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}
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],
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"mainEntity": {
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"@id": "https://workflowhub.eu/workflows/289?version=1"
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},
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"mentions": {
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"@id": "#query-37252371-c937-43bd-a0a7-3680b48c0538"
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},
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"sourceOrganization": {
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"@id": "#project-be6ffb55-4f5a-4c14-b60e-47e0951090c70"
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}
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},
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{
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"@id": "https://w3id.org/5s-crate/0.4",
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"@type": "Profile",
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"name": "Five Safes RO-Crate profile"
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},
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{
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"@id": "https://workflowhub.eu/workflows/289?version=1",
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"@type": "Dataset",
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"name": "CWL Protein MD Setup tutorial with mutations",
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"conformsTo": {
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"@id": "https://w3id.org/workflowhub/workflow-ro-crate/1.0"
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},
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"distribution": {
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"@id": "https://workflowhub.eu/workflows/289/ro_crate?version=1"
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}
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},
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{
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"@id": "https://workflowhub.eu/workflows/289/ro_crate?version=1",
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"@type": "DataDownload",
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"conformsTo": {
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"@id": "https://w3id.org/ro/crate"
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},
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"encodingFormat": "application/zip"
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},
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{
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"@id": "#query-37252371-c937-43bd-a0a7-3680b48c0538",
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"@type": "CreateAction",
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"actionStatus": "http://schema.org/PotentialActionStatus",
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"agent": {
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"@id": "https://orcid.org/0000-0001-9842-9718"
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},
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"instrument": {
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"@id": "https://workflowhub.eu/workflows/289?version=1"
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},
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"name": "Execute query 12389 on workflow ",
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"object": [
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{
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"@id": "input1.txt"
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},
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{
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"@id": "#enableFastMode"
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}
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]
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},
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{
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"@id": "https://orcid.org/0000-0001-9842-9718",
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"@type": "Person",
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"name": "Stian Soiland-Reyes",
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"affiliation": {
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"@id": "https://ror.org/027m9bs27"
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},
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"memberOf": [
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{
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"@id": "#project-be6ffb55-4f5a-4c14-b60e-47e0951090c70"
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}
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]
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},
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{
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"@id": "https://ror.org/027m9bs27",
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"@type": "Organization",
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"name": "The University of Manchester"
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},
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{
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"@id": "https://ror.org/01ee9ar58",
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"@type": "Organization",
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"name": "University of Nottingham"
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},
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{
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"@id": "#project-be6ffb55-4f5a-4c14-b60e-47e0951090c70",
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"@type": "Project",
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"name": "Investigation of cancer (TRE72 project 81)",
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"identifier": [
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{
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"@id": "_:localid:tre72:project81"
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}
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],
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"funding": {
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"@id": "https://gtr.ukri.org/projects?ref=10038961"
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},
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"member": [
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{
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"@id": "https://ror.org/027m9bs27"
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},
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{
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"@id": "https://ror.org/01ee9ar58"
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}
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]
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},
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{
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"@id": "_:localid:tre72:project81",
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"@type": "PropertyValue",
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"name": "tre72",
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"value": "project81"
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},
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{
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"@id": "https://gtr.ukri.org/projects?ref=10038961",
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"@type": "Grant",
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"name": "EOSC4Cancer"
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},
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{
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"@id": "input1.txt",
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"@type": "File",
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"name": "input1",
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"exampleOfWork": {
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"@id": "#sequence"
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}
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},
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{
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"@id": "#enableFastMode",
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"@type": "PropertyValue",
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"name": "--fast-mode",
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"value": "True",
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"exampleOfWork": {
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"@id": "#fast"
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}
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},
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{
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"@id": "#sequence",
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"@type": "FormalParameter",
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"name": "input-sequence"
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},
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{
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"@id": "#fast",
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"@type": "FormalParameter",
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"name": "fast-mode"
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}
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]
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}

‎tests/data/crates/invalid/five_safes_crate/context_single_wrong_version/ro-crate-metadata.json‎

Lines changed: 169 additions & 0 deletions
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{
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"@context": "https://w3id.org/ro/crate/1.1/context",
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"@graph": [
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{
5+
"@type": "CreativeWork",
6+
"@id": "ro-crate-metadata.json",
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"about": {
8+
"@id": "./"
9+
},
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"conformsTo": {
11+
"@id": "https://w3id.org/ro/crate/1.2"
12+
}
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},
14+
{
15+
"@id": "./",
16+
"@type": "Dataset",
17+
"name": "5-Safe RO-Crate Request",
18+
"description": "example 5-Safe RO-Crate request metadata for testing",
19+
"license": "Apache-2.0",
20+
"datePublished": "2025-09-20T14:38:00+00:00",
21+
"conformsTo": {
22+
"@id": "https://w3id.org/5s-crate/0.4"
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},
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"hasPart": [
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{
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"@id": "https://workflowhub.eu/workflows/289?version=1"
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},
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{
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"@id": "input1.txt"
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}
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],
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"mainEntity": {
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"@id": "https://workflowhub.eu/workflows/289?version=1"
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},
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"mentions": {
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"@id": "#query-37252371-c937-43bd-a0a7-3680b48c0538"
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},
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"sourceOrganization": {
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"@id": "#project-be6ffb55-4f5a-4c14-b60e-47e0951090c70"
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}
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},
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{
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"@id": "https://w3id.org/5s-crate/0.4",
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"@type": "Profile",
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"name": "Five Safes RO-Crate profile"
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},
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{
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"@id": "https://workflowhub.eu/workflows/289?version=1",
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"@type": "Dataset",
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"name": "CWL Protein MD Setup tutorial with mutations",
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"conformsTo": {
52+
"@id": "https://w3id.org/workflowhub/workflow-ro-crate/1.0"
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},
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"distribution": {
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"@id": "https://workflowhub.eu/workflows/289/ro_crate?version=1"
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}
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},
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{
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"@id": "https://workflowhub.eu/workflows/289/ro_crate?version=1",
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"@type": "DataDownload",
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"conformsTo": {
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"@id": "https://w3id.org/ro/crate"
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},
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"encodingFormat": "application/zip"
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},
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{
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"@id": "#query-37252371-c937-43bd-a0a7-3680b48c0538",
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"@type": "CreateAction",
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"actionStatus": "http://schema.org/PotentialActionStatus",
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"agent": {
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"@id": "https://orcid.org/0000-0001-9842-9718"
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},
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"instrument": {
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"@id": "https://workflowhub.eu/workflows/289?version=1"
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},
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"name": "Execute query 12389 on workflow ",
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"object": [
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{
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"@id": "input1.txt"
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},
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{
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"@id": "#enableFastMode"
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}
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]
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},
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{
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"@id": "https://orcid.org/0000-0001-9842-9718",
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"@type": "Person",
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"name": "Stian Soiland-Reyes",
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"affiliation": {
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"@id": "https://ror.org/027m9bs27"
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},
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"memberOf": [
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{
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"@id": "#project-be6ffb55-4f5a-4c14-b60e-47e0951090c70"
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}
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]
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},
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{
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"@id": "https://ror.org/027m9bs27",
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"@type": "Organization",
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"name": "The University of Manchester"
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},
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{
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"@id": "https://ror.org/01ee9ar58",
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"@type": "Organization",
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"name": "University of Nottingham"
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},
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{
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"@id": "#project-be6ffb55-4f5a-4c14-b60e-47e0951090c70",
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"@type": "Project",
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"name": "Investigation of cancer (TRE72 project 81)",
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"identifier": [
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{
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"@id": "_:localid:tre72:project81"
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}
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],
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"funding": {
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"@id": "https://gtr.ukri.org/projects?ref=10038961"
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},
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"member": [
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{
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"@id": "https://ror.org/027m9bs27"
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},
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{
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"@id": "https://ror.org/01ee9ar58"
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}
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]
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},
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{
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"@id": "_:localid:tre72:project81",
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"@type": "PropertyValue",
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"name": "tre72",
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"value": "project81"
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},
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{
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"@id": "https://gtr.ukri.org/projects?ref=10038961",
138+
"@type": "Grant",
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"name": "EOSC4Cancer"
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},
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{
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"@id": "input1.txt",
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"@type": "File",
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"name": "input1",
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"exampleOfWork": {
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"@id": "#sequence"
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}
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},
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{
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"@id": "#enableFastMode",
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"@type": "PropertyValue",
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"name": "--fast-mode",
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"value": "True",
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"exampleOfWork": {
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"@id": "#fast"
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}
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},
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{
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"@id": "#sequence",
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"@type": "FormalParameter",
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"name": "input-sequence"
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},
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{
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"@id": "#fast",
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"@type": "FormalParameter",
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"name": "fast-mode"
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}
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]
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}

‎tests/data/crates/valid/five-safes-crate-result/ro-crate-metadata.json‎

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@@ -1,5 +1,5 @@
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{
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"@context": "https://w3id.org/ro/crate/1.1/context",
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"@context": "https://w3id.org/ro/crate/1.2/context",
33
"@graph": [
44
{
55
"@type": "CreativeWork",
@@ -8,7 +8,7 @@
88
"@id": "./"
99
},
1010
"conformsTo": {
11-
"@id": "https://w3id.org/ro/crate/1.1"
11+
"@id": "https://w3id.org/ro/crate/1.2"
1212
}
1313
},
1414
{
@@ -404,4 +404,4 @@
404404
"name": "sha-512 algorithm"
405405
}
406406
]
407-
}
407+
}

‎tests/ro_crates.py‎

Lines changed: 9 additions & 10 deletions
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@@ -98,6 +98,10 @@ def five_safes_crate_request(self) -> Path:
9898
@property
9999
def five_safes_crate_result(self) -> Path:
100100
return VALID_CRATES_DATA_PATH / "five-safes-crate-result"
101+
102+
@property
103+
def five_safes_crate_multiple_context(self) -> Path:
104+
return VALID_CRATES_DATA_PATH / "five-safes-crate-multiple-context"
101105

102106

103107
class InvalidFileDescriptor:
@@ -980,20 +984,15 @@ def propertyvalue_no_unitcode(self) -> Path:
980984

981985
class Invalid5sROC:
982986

983-
base_path = INVALID_CRATES_DATA_PATH / "6_five_safes_crate/"
984-
985-
@property
986-
def funding_project_no_name(self) -> Path:
987-
return self.base_path / "funding_project_no_name"
987+
base_path = INVALID_CRATES_DATA_PATH / "five_safes_crate/"
988988

989989
@property
990-
def root_data_entity_no_source_organization(self) -> Path:
991-
return self.base_path / "root_data_entity_no_source_organization"
990+
def context_multiple_wrong_version(self) -> Path:
991+
return self.base_path / "context_multiple_wrong_version"
992992

993993
@property
994-
def root_data_entity_source_organization_not_entity(self) -> Path:
995-
return self.base_path / "root_data_entity_source_organization_not_entity"
996-
994+
def context_single_wrong_version(self) -> Path:
995+
return self.base_path / "context_single_wrong_version"
997996

998997
class InvalidMultiProfileROC:
999998

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