diff --git a/docs/version-specific/config-file-constants.md b/docs/version-specific/config-file-constants.md index 9b5b9a8b55..11b7b8df88 100644 --- a/docs/version-specific/config-file-constants.md +++ b/docs/version-specific/config-file-constants.md @@ -2,11 +2,11 @@ ## Only in 'DEFAULT' section: -Constant name |Constant help |Constant value ---------------------------|---------------------------------------------------|------------------------------------------------------------------- -``DEFAULT_REPOSITORYPATH``|Default easyconfigs repository path |``/home/example/.local/easybuild/ebfiles_repo`` -``DEFAULT_ROBOT_PATHS`` |List of default robot paths (':'-separated) |``/home/example/work/easybuild-easyconfigs/easybuild/easyconfigs`` -``HOME`` |Current user's home directory, expanded '~' |``/home/example`` -``USER`` |Current username, translated uid from password file|``example`` +Constant name |Constant help |Constant value +--------------------------|--------------------------------------------------------------------|---------------------------------------------------------------------------- +``DEFAULT_REPOSITORYPATH``|Default easyconfigs repository path |``/home/example/.local/easybuild/ebfiles_repo`` +``DEFAULT_ROBOT_PATHS`` |List of default robot paths (':'-separated) |``/home/example/work/EasyBuild/easybuild-easyconfigs/easybuild/easyconfigs`` +``HOME`` |Current user's home directory, expanded '~' |``/home/example`` +``USER`` |Current username, translated uid from password file (when available)|``example`` *(see also* ``eb --avail-cfgfile-constants`` *)* diff --git a/docs/version-specific/easyblocks.md b/docs/version-specific/easyblocks.md index c08df4e2a0..29bad2b8d0 100644 --- a/docs/version-specific/easyblocks.md +++ b/docs/version-specific/easyblocks.md @@ -15,6 +15,7 @@ - EB_Maple - EB_Mathematica - EB_Molpro + - EB_Sentaurus - EB_TensorRT - JAR - PackedBinary @@ -87,6 +88,7 @@ - EB_ScaLAPACK - EB_SuperLU - EB_Trilinos + - ROCmComponent - ConfigureMakePythonPackage - EB_BerkeleyGW - EB_binutils diff --git a/docs/version-specific/easyconfig-constants.md b/docs/version-specific/easyconfig-constants.md index d6192a7ad3..e714c984a3 100644 --- a/docs/version-specific/easyconfig-constants.md +++ b/docs/version-specific/easyconfig-constants.md @@ -4,7 +4,7 @@ Constant name |Constant value ---------------------------|-------------------------------------------------------------|------------------------------------------------------------------------------- ``ARCH`` |``aarch64`` |CPU architecture of current system (aarch64, x86_64, ppc64le, ...) ``EXTERNAL_MODULE`` |``EXTERNAL_MODULE`` |External module marker -``HOME`` |``/home/example`` |Home directory ($HOME) +``HOME`` |``/home/example`` |Home directory ($HOME) ``MODULE_LOAD_ENV_HEADERS``|``CPP_HEADERS`` |Environment variables with search paths to CPP headers ``OS_NAME`` |``UNKNOWN`` |System name (e.g. 'fedora' or 'RHEL') ``OS_PKG_IBVERBS_DEV`` |``('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')``|OS packages providing ibverbs/infiniband development support @@ -15,6 +15,6 @@ Constant name |Constant value ``OS_TYPE`` |``Darwin`` |System type (e.g. 'Linux' or 'Darwin') ``OS_VERSION`` |``UNKNOWN`` |System version ``SYSTEM`` |``{'name': 'system', 'version': 'system'}`` |System toolchain -``SYS_PYTHON_VERSION`` |``3.13.7`` |System Python version (platform.python_version()) +``SYS_PYTHON_VERSION`` |``3.9.6`` |System Python version (platform.python_version()) *(see also* ``eb --avail-easyconfig-constants`` *)* diff --git a/docs/version-specific/eb-help.md b/docs/version-specific/eb-help.md index 0e779539dc..1203578d24 100644 --- a/docs/version-specific/eb-help.md +++ b/docs/version-specific/eb-help.md @@ -39,6 +39,7 @@ Option flag |Option description Option flag |Option description -------------------------------------------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +``--bwrap`` |Build/install in bubblewrap namespace, enabling installation to a temporary location before moving to the final destination (default: False) ``--dry-run`` |Print build overview incl. dependencies (full paths) (default: False) ``-D, --dry-run-short`` |Print build overview incl. dependencies (short paths) (default: False) ``-x, --extended-dry-run`` |Print build environment and (expected) build procedure that will be performed (default: False) @@ -52,11 +53,12 @@ Option flag |Option description ``-b BLOCKS, --only-blocks=BLOCKS`` |Only build listed blocks (type comma-separated list) ``--rebuild`` |Rebuild software, even if module already exists (don't skip OS dependencies checks) (default: False) ``-r [PATH[:PATH]], --robot=[PATH[:PATH]]``|Enable dependency resolution, optionally consider additional paths to search for easyconfigs (type pathsep-separated list) -``--robot-paths=PATH[:PATH]`` |Additional paths to consider by robot for easyconfigs (--robot paths get priority) (type pathsep-separated list; default: /home/example/work/easybuild-easyconfigs/easybuild/easyconfigs) +``--robot-paths=PATH[:PATH]`` |Additional paths to consider by robot for easyconfigs (--robot paths get priority) (type pathsep-separated list; default: /home/example/work/EasyBuild/easybuild-easyconfigs/easybuild/easyconfigs) ``--search-paths=PATH[:PATH]`` |Additional locations to consider in --search (next to --robot and --robot-paths paths) (type pathsep-separated list) ``-k, --skip`` |Skip existing software (useful for installing additional packages) (default: False) ``-s STOP, --stop=STOP`` |Stop the installation after certain step (type choice; default: extract) (choices: fetch, ready, extract, patch, prepare, configure, build, test, install, extensions, postiter, postproc, sanitycheck, cleanup, module, permissions, package, testcases) ``--strict=STRICT`` |Set strictness level (type choice; default: warn) (choices: ignore, warn, error) +``--use-entrypoints`` |Use entry points for easyblocks, toolchains, and hooks (default: False) ## Configuration options @@ -66,6 +68,7 @@ Option flag |Option descrip ``--avail-modules-tools`` |Show all supported module tools (default: False) ``--avail-repositories`` |Show all repository types (incl. non-usable) (default: False) ``--buildpath=BUILDPATH`` |Temporary build path (default: /home/example/.local/easybuild/build) +``--bwrap-installpath=BWRAP-INSTALLPATH`` |Bubblewrap install path for software and modules (default: /home/example/.local/easybuild/bwrap) ``--containerpath=CONTAINERPATH`` |Location where container recipe & image will be stored (default: /home/example/.local/easybuild/containers) ``--envvars-user-modules=ENVVARS-USER-MODULES`` |List of environment variables that hold the base paths for which user-specific modules will be installed relative to (type comma-separated list; default: HOME) ``--external-modules-metadata=EXTERNAL-MODULES-METADATA`` |List of (glob patterns for) paths to files specifying metadata for external modules (INI format) (type comma-separated list) @@ -214,14 +217,14 @@ Option flag |Option description ## Options for job backend Option flag |Option description --------------------------------------------|--------------------------------------------------------------------------------------------------------------------------- +-------------------------------------------|------------------------------------------------------------------------------------------------------------------------------ ``--job-backend-config=BACKEND-CONFIG`` |Configuration file for job backend ``--job-cores=CORES`` |Number of cores to request per job (type int) ``--job-deps-type=DEPS-TYPE`` |Type of dependency to set between jobs (default depends on job backend) (type choice) (choices: abort_on_error, always_run) ``--job-eb-cmd=EB-CMD`` |EasyBuild command to use in jobs (type str; default: eb) ``--job-max-jobs=MAX-JOBS`` |Maximum number of concurrent jobs (queued and running, 0 = unlimited) (type int; default: 0) ``--job-max-walltime=MAX-WALLTIME`` |Maximum walltime for jobs (in hours) (type int; default: 24) -``--job-output-dir=OUTPUT-DIR`` |Output directory for jobs (default: current directory) (default: /Volumes/work/easybuild-docs/docs/version-specific) +``--job-output-dir=OUTPUT-DIR`` |Output directory for jobs (default: current directory) (default: /Volumes/work/EasyBuild/easybuild-docs/docs/version-specific) ``--job-polling-interval=POLLING-INTERVAL``|Interval between polls for status of jobs (in seconds) (type ; default: 30.0) ``--job-target-resource=TARGET-RESOURCE`` |Target resource for jobs @@ -255,6 +258,7 @@ Option flag |Option ``--cuda-sanity-check-error-on-failed-checks`` |If enabled, failures in the CUDA sanity check will produce an error. If disabled, the CUDA sanity check will be performed and failures will be reported through warnings, but they will not result in an error (default: False) ``--cuda-sanity-check-strict`` |Perform strict CUDA sanity check. Without this option, the CUDA sanity check will fail if the CUDA binaries don't contain code for (at least) all compute capabilities defined in --cude-compute-capabilities, but will accept if code for additional compute capabilities is present. With this setting, the sanity check will also fail if code is present for more compute capabilities than defined in --cuda-compute-capabilities. (default: False) ``--debug-lmod`` |Run Lmod modules tool commands in debug module (default: False) +``--debug-module-cmds`` |Show additional information of module commands (default: False) ``--default-opt-level=DEFAULT-OPT-LEVEL`` |Specify default optimisation level (type choice; default: defaultopt) (choices: noopt, lowopt, defaultopt, opt) ``--deprecated=DEPRECATED`` |Run pretending to be (future) version, to test removal of deprecated code. ``--detect-loaded-modules=DETECT-LOADED-MODULES`` |Detect loaded EasyBuild-generated modules, act accordingly; supported values: error, ignore, purge, unload, warn (default: warn) @@ -269,6 +273,7 @@ Option flag |Option ``--extra-source-urls=URL[|URL]`` |Specify URLs to fetch sources from in addition to those in the easyconfig (type |-separated tuple; default: https://sources.easybuild.io) ``--fail-on-mod-files-gcccore`` |Fail if .mod files are detected in a GCCcore install (default: False) ``--fetch`` |Allow downloading sources ignoring OS and modules tool dependencies, implies --stop=fetch, --ignore-osdeps and ignore modules tool (default: False) +``--fetch-all`` |Download sources (like --fetch), don't stop when download failed for one of the easyconfig (default: False) ``--filter-deps=FILTER-DEPS`` |List of dependencies that you do *not* want to install with EasyBuild, because equivalent OS packages are installed. (e.g. --filter-deps=zlib,ncurses) (type comma-separated list) ``--filter-ecs=FILTER-ECS`` |List of easyconfigs (given as glob patterns) to *ignore* when given on command line or auto-selected when building with --from-pr. (e.g. --filter-ecs=*intel*) (type comma-separated list) ``--filter-env-vars=FILTER-ENV-VARS`` |List of names of environment variables that should *not* be defined/updated by module files generated by EasyBuild (type comma-separated list) diff --git a/docs/version-specific/generic-easyblocks.md b/docs/version-specific/generic-easyblocks.md index 460983034f..38542978f8 100644 --- a/docs/version-specific/generic-easyblocks.md +++ b/docs/version-specific/generic-easyblocks.md @@ -6,7 +6,7 @@ # Overview of generic easyblocks {: #generic_easyblocks } -[BinariesTarball](#binariestarball) - [Binary](#binary) - [BuildEnv](#buildenv) - [Bundle](#bundle) - [CMakeMake](#cmakemake) - [CMakeMakeCp](#cmakemakecp) - [CMakeNinja](#cmakeninja) - [CMakePythonPackage](#cmakepythonpackage) - [Cargo](#cargo) - [CargoPythonBundle](#cargopythonbundle) - [CargoPythonPackage](#cargopythonpackage) - [CmdCp](#cmdcp) - [Conda](#conda) - [ConfigureMake](#configuremake) - [ConfigureMakePythonPackage](#configuremakepythonpackage) - [CrayToolchain](#craytoolchain) - [Dataset](#dataset) - [FortranPythonPackage](#fortranpythonpackage) - [GoPackage](#gopackage) - [IntelBase](#intelbase) - [JAR](#jar) - [JuliaBundle](#juliabundle) - [JuliaPackage](#juliapackage) - [MakeCp](#makecp) - [MesonNinja](#mesonninja) - [ModuleRC](#modulerc) - [NvidiaBase](#nvidiabase) - [OCamlPackage](#ocamlpackage) - [OctavePackage](#octavepackage) - [PackedBinary](#packedbinary) - [PerlBundle](#perlbundle) - [PerlModule](#perlmodule) - [PythonBundle](#pythonbundle) - [PythonPackage](#pythonpackage) - [RPackage](#rpackage) - [Rpm](#rpm) - [RubyGem](#rubygem) - [SCons](#scons) - [SystemCompiler](#systemcompiler) - [SystemCompilerGCC](#systemcompilergcc) - [SystemMPI](#systemmpi) - [Tarball](#tarball) - [Toolchain](#toolchain) - [VSCPythonPackage](#vscpythonpackage) - [VersionIndependentPythonPackage](#versionindependentpythonpackage) - [Waf](#waf) +[BinariesTarball](#binariestarball) - [Binary](#binary) - [BuildEnv](#buildenv) - [Bundle](#bundle) - [CMakeMake](#cmakemake) - [CMakeMakeCp](#cmakemakecp) - [CMakeNinja](#cmakeninja) - [CMakePythonPackage](#cmakepythonpackage) - [Cargo](#cargo) - [CargoPythonBundle](#cargopythonbundle) - [CargoPythonPackage](#cargopythonpackage) - [CmdCp](#cmdcp) - [Conda](#conda) - [ConfigureMake](#configuremake) - [ConfigureMakePythonPackage](#configuremakepythonpackage) - [CrayToolchain](#craytoolchain) - [Dataset](#dataset) - [FortranPythonPackage](#fortranpythonpackage) - [GoPackage](#gopackage) - [IntelBase](#intelbase) - [JAR](#jar) - [JuliaBundle](#juliabundle) - [JuliaPackage](#juliapackage) - [MakeCp](#makecp) - [MesonNinja](#mesonninja) - [ModuleRC](#modulerc) - [NvidiaBase](#nvidiabase) - [OCamlPackage](#ocamlpackage) - [OctavePackage](#octavepackage) - [PackedBinary](#packedbinary) - [PerlBundle](#perlbundle) - [PerlModule](#perlmodule) - [PythonBundle](#pythonbundle) - [PythonPackage](#pythonpackage) - [ROCmComponent](#rocmcomponent) - [RPackage](#rpackage) - [Rpm](#rpm) - [RubyGem](#rubygem) - [SCons](#scons) - [SystemCompiler](#systemcompiler) - [SystemCompilerGCC](#systemcompilergcc) - [SystemMPI](#systemmpi) - [Tarball](#tarball) - [Toolchain](#toolchain) - [VSCPythonPackage](#vscpythonpackage) - [VersionIndependentPythonPackage](#versionindependentpythonpackage) - [Waf](#waf) ## ``BinariesTarball`` @@ -15,6 +15,7 @@ Support for installing a tarball of binaries + ### Extra easyconfig parameters specific to ``BinariesTarball`` easyblock easyconfig parameter|description |default value @@ -25,10 +26,6 @@ easyconfig parameter|description ### Customised steps in ``BinariesTarball`` easyblock -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - * ``install_step`` - Install by copying unzipped binaries to 'bin' subdir of installation dir, and fixing permissions. @@ -40,6 +37,7 @@ easyconfig parameter|description Support for installing software that comes in binary form. Just copy the sources to the install dir, or use the specified install command. + ### Extra easyconfig parameters specific to ``Binary`` easyblock easyconfig parameter|description |default value @@ -93,6 +91,7 @@ moduleclass = 'bio' Build environment of toolchain: only generate module file + ### Extra easyconfig parameters specific to ``BuildEnv`` easyblock easyconfig parameter |description |default value @@ -109,10 +108,6 @@ easyconfig parameter |description ### Customised steps in ``BuildEnv`` easyblock -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - * ``install_step`` - Custom install step for buildenv: copy RPATH wrapper scripts to install dir (if they exist) @@ -123,6 +118,7 @@ easyconfig parameter |description Bundle of modules: only generate module files, nothing to build/install + ### Extra easyconfig parameters specific to ``Bundle`` easyblock easyconfig parameter |description |default value @@ -201,21 +197,19 @@ easyconfig parameter |description ### Customised steps in ``CMakeMake`` easyblock -* ``build_step`` - The type of the None singleton. - * ``configure_step`` - Configure build using 'cmake' -:param srcdir: custom source directory to use (if None, use 'srcdir' easyconfig parameter, or start dir) -:param builddir: custom build directory to use (if None, 'easybuild_obj' in build directory will be used) -:param fail_on_error: raise error if cmake command failed with non-zero exit code (enabled by default) -:param return_full_cmd_result: return full result of running cmake command (not just the output) + :param srcdir: custom source directory to use (if None, use 'srcdir' easyconfig parameter, or start dir) + :param builddir: custom build directory to use (if None, 'easybuild_obj' in build directory will be used) + :param fail_on_error: raise error if cmake command failed with non-zero exit code (enabled by default) + :param return_full_cmd_result: return full result of running cmake command (not just the output) * ``install_step`` - Configure build using 'cmake' -:param srcdir: custom source directory to use (if None, use 'srcdir' easyconfig parameter, or start dir) -:param builddir: custom build directory to use (if None, 'easybuild_obj' in build directory will be used) -:param fail_on_error: raise error if cmake command failed with non-zero exit code (enabled by default) -:param return_full_cmd_result: return full result of running cmake command (not just the output) + :param srcdir: custom source directory to use (if None, use 'srcdir' easyconfig parameter, or start dir) + :param builddir: custom build directory to use (if None, 'easybuild_obj' in build directory will be used) + :param fail_on_error: raise error if cmake command failed with non-zero exit code (enabled by default) + :param return_full_cmd_result: return full result of running cmake command (not just the output) ### Example easyconfig for ``CMakeMake`` easyblock @@ -262,6 +256,7 @@ Software configured with CMake but without 'make install' step We use the default CMakeMake implementation, and use install_step from MakeCp. + ### Extra easyconfig parameters specific to ``CMakeMakeCp`` easyblock easyconfig parameter |description |default value @@ -292,8 +287,6 @@ easyconfig parameter |description ### Customised steps in ``CMakeMakeCp`` easyblock -* ``build_step`` - The type of the None singleton. - * ``configure_step`` - Configure build using CMake * ``install_step`` - Install by copying specified files and directories. @@ -353,6 +346,7 @@ and then put the Python package in lib/pythonX.Y/site-packages. We use the default CMake implementation, and use make_module_extra from PythonPackage to generate a module file which sets the PYTHONPATH. + ### Extra easyconfig parameters specific to ``CMakePythonPackage`` easyblock easyconfig parameter |description |default value @@ -370,6 +364,7 @@ easyconfig parameter |description ``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` ``configure_without_installdir`` |Avoid passing an install directory to the configure command (such as via --prefix) |``False`` ``download_dep_fail`` |Fail if downloaded dependencies are detected. Defaults to True unless 'use_pip_for_deps' or 'use_pip_requirement' is True. |``None`` +``dummy_package`` |Install a dummy package empty in contents but visible by Python package managers such as pip |``None`` ``fix_python_shebang_for`` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` ``generator`` |Build file generator to use. None to use CMakes default |``None`` ``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` @@ -389,6 +384,7 @@ easyconfig parameter |description ``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` ``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` ``runtest`` |Make target to test build or True to use CTest |``None`` +``sanity_check_pip_list`` |Run 'python -m pip list' to ensure specified package names and versions are correct. |``None`` ``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` ``separate_build_dir`` |Perform build in a separate directory. Can be set to a specific path to use, otherwise a new, empty folder is created. A relative path is relative to %(builddir)s. To build in the source directory set this to 'False'. |``True`` ``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` @@ -408,8 +404,6 @@ easyconfig parameter |description ### Customised steps in ``CMakePythonPackage`` easyblock -* ``build_step`` - The type of the None singleton. - * ``configure_step`` - Main configuration using cmake * ``install_step`` - Main configuration using cmake @@ -450,6 +444,7 @@ Builds just like PythonBundle with setup for Rust and crates from Cargo easybloc The cargo init step will set up the environment variables for rustc and vendor sources but all the build steps are triggered like normal. + ### Extra easyconfig parameters specific to ``CargoPythonBundle`` easyblock easyconfig parameter |description |default value @@ -464,6 +459,7 @@ easyconfig parameter |description ``default_component_specs`` |Default specs to use for every component |``{}`` ``default_easyblock`` |Default easyblock to use for components |``"CargoPythonPackage"`` ``download_dep_fail`` |Fail if downloaded dependencies are detected. Defaults to True unless 'use_pip_for_deps' or 'use_pip_requirement' is True. |``None`` +``dummy_package`` |Install a dummy package empty in contents but visible by Python package managers such as pip |``None`` ``enable_tests`` |Enable building of tests |``True`` ``fix_python_shebang_for`` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` @@ -482,6 +478,7 @@ easyconfig parameter |description ``runtest`` |Run unit tests. |``True`` ``sanity_check_all_components``|Enable sanity checks for all components |``False`` ``sanity_check_components`` |List of components for which to run sanity checks |``[]`` +``sanity_check_pip_list`` |Run 'python -m pip list' to ensure specified package names and versions are correct. |``None`` ``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` ``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` ``testinstall`` |Install into temporary directory prior to running the tests. |``False`` @@ -494,15 +491,6 @@ easyconfig parameter |description ``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` ``zipped_egg`` |Install as a zipped eggs |``False`` -### Customised steps in ``CargoPythonBundle`` easyblock - -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - -* ``install_step`` - The type of the None singleton. - - ## ``CargoPythonPackage`` (derives from [``PythonPackage``](#pythonpackage), [``Cargo``](#cargo)) @@ -512,6 +500,7 @@ Build a Python package with setup from Cargo but build/install step from PythonP The cargo init step will set up the environment variables for rustc and vendor sources but all the build steps are triggered via normal PythonPackage steps like normal. + ### Extra easyconfig parameters specific to ``CargoPythonPackage`` easyblock easyconfig parameter |description |default value @@ -521,6 +510,7 @@ easyconfig parameter |description ``click_autocomplete_bins``|List of command line tools installed by the package that use the 'click' package and for which autocompletion scripts should be generated |``None`` ``crates`` |List of (crate, version, [repo, rev]) tuples to use |``[]`` ``download_dep_fail`` |Fail if downloaded dependencies are detected. Defaults to True unless 'use_pip_for_deps' or 'use_pip_requirement' is True. |``None`` +``dummy_package`` |Install a dummy package empty in contents but visible by Python package managers such as pip |``None`` ``enable_tests`` |Enable building of tests |``True`` ``fix_python_shebang_for`` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` @@ -537,6 +527,7 @@ easyconfig parameter |description ``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` ``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` ``runtest`` |Run unit tests. |``True`` +``sanity_check_pip_list`` |Run 'python -m pip list' to ensure specified package names and versions are correct. |``None`` ``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` ``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` ``testinstall`` |Install into temporary directory prior to running the tests. |``False`` @@ -551,8 +542,6 @@ easyconfig parameter |description ### Customised steps in ``CargoPythonPackage`` easyblock -* ``build_step`` - The type of the None singleton. - * ``configure_step`` - Run configure for Cargo and PythonPackage * ``install_step`` - Run configure for Cargo and PythonPackage @@ -566,6 +555,7 @@ easyconfig parameter |description Software with no configure, no make, and no make install step. Just run the specified command for all sources, and copy specified files to the install dir + ### Extra easyconfig parameters specific to ``CmdCp`` easyblock easyconfig parameter |description |default value @@ -617,12 +607,8 @@ easyconfig parameter |description ### Customised steps in ``Conda`` easyblock -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - * ``install_step`` - Install software using 'conda env create' or 'conda create' & 'conda install' -(or the 'mamba', etc., equivalent). + (or the 'mamba', etc., equivalent). ## ``ConfigureMake`` @@ -632,6 +618,7 @@ easyconfig parameter |description Support for building and installing applications with configure/make/make install + ### Extra easyconfig parameters specific to ``ConfigureMake`` easyblock easyconfig parameter |description |default value @@ -660,13 +647,13 @@ installopts |Extra options for installation ### Customised steps in ``ConfigureMake`` easyblock * ``build_step`` - Start the actual build -- typical: make -j X + - typical: make -j X * ``configure_step`` - Configure step -- typically ./configure --prefix=/install/path style + - typically ./configure --prefix=/install/path style * ``install_step`` - Create the installation in correct location -- typical: make install + - typical: make install ### Example easyconfig for ``ConfigureMake`` easyblock @@ -707,6 +694,7 @@ Implemented by using: - using the build_step and install_step from ConfigureMake - using the sanity_check_step and make_module_extra from PythonPackage + ### Extra easyconfig parameters specific to ``ConfigureMakePythonPackage`` easyblock easyconfig parameter |description |default value @@ -721,6 +709,7 @@ easyconfig parameter |description ``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` ``configure_without_installdir`` |Avoid passing an install directory to the configure command (such as via --prefix) |``False`` ``download_dep_fail`` |Fail if downloaded dependencies are detected. Defaults to True unless 'use_pip_for_deps' or 'use_pip_requirement' is True. |``None`` +``dummy_package`` |Install a dummy package empty in contents but visible by Python package managers such as pip |``None`` ``fix_python_shebang_for`` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` ``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` ``install_cmd`` |Install command to use |``"make install"`` @@ -737,6 +726,7 @@ easyconfig parameter |description ``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` ``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` ``runtest`` |Run unit tests. |``True`` +``sanity_check_pip_list`` |Run 'python -m pip list' to ensure specified package names and versions are correct. |``None`` ``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` ``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` ``tar_config_opts`` |Override tar settings as determined by configure. |``False`` @@ -803,6 +793,7 @@ moduleclass = 'vis' Compiler toolchain: generate module file only, nothing to build/install + ### Extra easyconfig parameters specific to ``CrayToolchain`` easyblock easyconfig parameter |description |default value @@ -815,15 +806,6 @@ easyconfig parameter |description ``sanity_check_all_components``|Enable sanity checks for all components |``False`` ``sanity_check_components`` |List of components for which to run sanity checks |``[]`` -### Customised steps in ``CrayToolchain`` easyblock - -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - -* ``install_step`` - The type of the None singleton. - - ## ``Dataset`` (derives from [``Binary``](#binary)) @@ -840,10 +822,6 @@ easyconfig parameter |description ### Customised steps in ``Dataset`` easyblock -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - * ``install_step`` - No install step, datasets are extracted directly into installdir @@ -861,6 +839,7 @@ easyconfig parameter |description ``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` ``click_autocomplete_bins``|List of command line tools installed by the package that use the 'click' package and for which autocompletion scripts should be generated |``None`` ``download_dep_fail`` |Fail if downloaded dependencies are detected. Defaults to True unless 'use_pip_for_deps' or 'use_pip_requirement' is True. |``None`` +``dummy_package`` |Install a dummy package empty in contents but visible by Python package managers such as pip |``None`` ``fix_python_shebang_for`` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` @@ -874,6 +853,7 @@ easyconfig parameter |description ``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` ``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` ``runtest`` |Run unit tests. |``True`` +``sanity_check_pip_list`` |Run 'python -m pip list' to ensure specified package names and versions are correct. |``None`` ``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` ``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` ``testinstall`` |Install into temporary directory prior to running the tests. |``False`` @@ -927,6 +907,7 @@ Base class for Intel software - no configure/make : binary release - add license_file variable + ### Extra easyconfig parameters specific to ``IntelBase`` easyblock easyconfig parameter |description |default value @@ -961,15 +942,6 @@ easyconfig parameter|description ``prepend_to_path`` |Prepend the given directories (relative to install-dir) to the environment variable PATH in the module file. Default is the install-dir itself.|``['']`` ``staged_install`` |Perform staged installation via subdirectory of build directory |``False`` -### Customised steps in ``JAR`` easyblock - -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - -* ``install_step`` - The type of the None singleton. - - ## ``JuliaBundle`` (derives from [``Bundle``](#bundle), [``JuliaPackage``](#juliapackage)) @@ -978,6 +950,7 @@ easyconfig parameter|description Bundle of JuliaPackages: install Julia packages as extensions in a bundle Defines custom sanity checks and module environment + ### Extra easyconfig parameters specific to ``JuliaBundle`` easyblock easyconfig parameter |description |default value @@ -994,10 +967,6 @@ easyconfig parameter |description ### Customised steps in ``JuliaBundle`` easyblock -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - * ``install_step`` - Prepare installation environment and dd all dependencies to project environment. @@ -1025,6 +994,7 @@ provided by the module. Effectively, this translates to: - append installation directory to list of DEPOT_PATH, only really needed to load artifacts (JLL packages) - append installation Project.toml file to list of LOAD_PATH, needed to load packages with `using` command + ### Extra easyconfig parameters specific to ``JuliaPackage`` easyblock easyconfig parameter |description |default value @@ -1048,6 +1018,7 @@ easyconfig parameter |description Software with no configure and no make install step. + ### Extra easyconfig parameters specific to ``MakeCp`` easyblock easyconfig parameter |description |default value @@ -1069,8 +1040,6 @@ easyconfig parameter |description ### Customised steps in ``MakeCp`` easyblock -* ``build_step`` - The type of the None singleton. - * ``configure_step`` - Configure build if required * ``install_step`` - Install by copying specified files and directories. @@ -1083,6 +1052,7 @@ easyconfig parameter |description Support for building and installing software with 'meson' and 'ninja'. + ### Extra easyconfig parameters specific to ``MesonNinja`` easyblock easyconfig parameter |description |default value @@ -1111,6 +1081,7 @@ easyconfig parameter |description Generic easyblock to create a software-specific .modulerc file + ### Extra easyconfig parameters specific to ``ModuleRC`` easyblock easyconfig parameter|description |default value @@ -1133,6 +1104,7 @@ easyconfig parameter|description |default value Core support for installing the NVIDIA HPC SDK (NVHPC) + ### Extra easyconfig parameters specific to ``NvidiaBase`` easyblock easyconfig parameter |description |default value @@ -1153,10 +1125,6 @@ easyconfig parameter |description ### Customised steps in ``NvidiaBase`` easyblock -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - * ``install_step`` - Install by running install command. @@ -1174,8 +1142,6 @@ easyconfig parameter|description |default value ### Customised steps in ``OCamlPackage`` easyblock -* ``build_step`` - The type of the None singleton. - * ``configure_step`` - Raise error when configure step is run: installing OCaml packages stand-alone is not supported (yet) * ``install_step`` - Raise error when configure step is run: installing OCaml packages stand-alone is not supported (yet) @@ -1195,8 +1161,6 @@ easyconfig parameter|description |default value ### Customised steps in ``OctavePackage`` easyblock -* ``build_step`` - The type of the None singleton. - * ``configure_step`` - Raise error when configure step is run: installing Octave toolboxes stand-alone is not supported (yet) * ``install_step`` - Raise error when configure step is run: installing Octave toolboxes stand-alone is not supported (yet) @@ -1209,6 +1173,7 @@ easyconfig parameter|description |default value Support for installing packed binary software. Just unpack the sources in the install dir + ### Extra easyconfig parameters specific to ``PackedBinary`` easyblock easyconfig parameter|description |default value @@ -1221,10 +1186,6 @@ easyconfig parameter|description ### Customised steps in ``PackedBinary`` easyblock -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - * ``install_step`` - Copy all unpacked source directories to install directory, one-by-one. @@ -1235,6 +1196,7 @@ easyconfig parameter|description Bundle of perl modules + ### Extra easyconfig parameters specific to ``PerlBundle`` easyblock easyconfig parameter |description |default value @@ -1250,15 +1212,6 @@ easyconfig parameter |description ``sanity_check_all_components``|Enable sanity checks for all components |``False`` ``sanity_check_components`` |List of components for which to run sanity checks |``[]`` -### Customised steps in ``PerlBundle`` easyblock - -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - -* ``install_step`` - The type of the None singleton. - - ## ``PerlModule`` (derives from ``ExtensionEasyBlock``, [``ConfigureMake``](#configuremake)) @@ -1290,6 +1243,7 @@ easyconfig parameter|description Bundle of PythonPackages: install Python packages as extensions in a bundle Defines custom sanity checks and module environment + ### Extra easyconfig parameters specific to ``PythonBundle`` easyblock easyconfig parameter |description |default value @@ -1303,6 +1257,7 @@ easyconfig parameter |description ``default_component_specs`` |Default specs to use for every component |``{}`` ``default_easyblock`` |Default easyblock to use for components |``"PythonPackage"`` ``download_dep_fail`` |Fail if downloaded dependencies are detected. Defaults to True unless 'use_pip_for_deps' or 'use_pip_requirement' is True. |``None`` +``dummy_package`` |Install a dummy package empty in contents but visible by Python package managers such as pip |``None`` ``fix_python_shebang_for`` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` @@ -1318,6 +1273,7 @@ easyconfig parameter |description ``runtest`` |Run unit tests. |``True`` ``sanity_check_all_components``|Enable sanity checks for all components |``False`` ``sanity_check_components`` |List of components for which to run sanity checks |``[]`` +``sanity_check_pip_list`` |Run 'python -m pip list' to ensure specified package names and versions are correct. |``None`` ``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` ``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` ``testinstall`` |Install into temporary directory prior to running the tests. |``False`` @@ -1330,15 +1286,6 @@ easyconfig parameter |description ``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` ``zipped_egg`` |Install as a zipped eggs |``False`` -### Customised steps in ``PythonBundle`` easyblock - -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - -* ``install_step`` - The type of the None singleton. - - ## ``PythonPackage`` (derives from ``ExtensionEasyBlock``) @@ -1353,6 +1300,7 @@ easyconfig parameter |description ``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` ``click_autocomplete_bins``|List of command line tools installed by the package that use the 'click' package and for which autocompletion scripts should be generated |``None`` ``download_dep_fail`` |Fail if downloaded dependencies are detected. Defaults to True unless 'use_pip_for_deps' or 'use_pip_requirement' is True. |``None`` +``dummy_package`` |Install a dummy package empty in contents but visible by Python package managers such as pip |``None`` ``fix_python_shebang_for`` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` @@ -1366,6 +1314,7 @@ easyconfig parameter |description ``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` ``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` ``runtest`` |Run unit tests. |``True`` +``sanity_check_pip_list`` |Run 'python -m pip list' to ensure specified package names and versions are correct. |``None`` ``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` ``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` ``testinstall`` |Install into temporary directory prior to running the tests. |``False`` @@ -1387,6 +1336,48 @@ easyconfig parameter |description * ``install_step`` - Install Python package to a custom path using setup.py +## ``ROCmComponent`` + +(derives from [``CMakeMake``](#cmakemake)) + +Support for building ROCm components + +### Extra easyconfig parameters specific to ``ROCmComponent`` easyblock + +easyconfig parameter |description |default value +----------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------ +``abs_path_compilers`` |Specify compilers via absolute file path (not via command names) |``False`` +``allow_system_boost`` |Always allow CMake to pick up on Boost installed in OS (even if Boost is included as a dependency) |``False`` +``build_cmd`` |Build command to use |``"make"`` +``build_cmd_targets`` |Target name (string) or list of target names to build |``""`` +``build_shared_libs`` |Build shared library (instead of static library)None can be used to add no flag (usually results in static library) |``None`` +``build_type`` |Build type for CMake, e.g. Release.Defaults to 'Release', 'RelWithDebInfo' or 'Debug' depending on toolchainopts[debug,noopt] |``None`` +``compiler_toolchain`` |Select toolchain to build the package. Allowed values: default, rocm-llvm, llvm, hipcc |``"default"`` +``configure_cmd`` |Configure command to use |``"cmake"`` +``configure_cmd_prefix`` |Prefix to be glued before ./configure |``""`` +``configure_without_installdir`` |Avoid passing an install directory to the configure command (such as via --prefix) |``False`` +``generator`` |Build file generator to use. None to use CMakes default |``None`` +``hip_platform`` |Specify HIP platform. Allowed values: amd, nvidia |``"amd"`` +``host_type`` |Value to provide to --host option of configure script, e.g., x86_64-pc-linux-gnu (determined by config.guess shipped with EasyBuild if None, False implies to leave it up to the configure script) |``None`` +``ignore_system_rocm`` |Ignore system ROCm installation |``True`` +``install_cmd`` |Install command to use |``"make install"`` +``install_libdir`` |Subdirectory to use for library installation files |``"lib"`` +``install_target_subdir`` |Subdirectory to use as installation target |``None`` +``prefix_opt`` |Prefix command line option for configure script ('--prefix=' if None) |``None`` +``runtest`` |Make target to test build or True to use CTest |``None`` +``separate_build_dir`` |Perform build in a separate directory. Can be set to a specific path to use, otherwise a new, empty folder is created. A relative path is relative to %(builddir)s. To build in the source directory set this to 'False'. |``True`` +``srcdir`` |Source directory location to provide to cmake command |``None`` +``tar_config_opts`` |Override tar settings as determined by configure. |``False`` +``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` +``unrecognized_configure_options``|Action to do when unrecognized options passed to ./configure are detected, defaults to aborting the build. Can be set to 'warn' or 'ignore' (NOT RECOMMENDED! It might hide actual errors e.g. misspelling of intended or changed options)|``"error"`` + +### Customised steps in ``ROCmComponent`` easyblock + +* ``configure_step`` - Prepare configuration to properly build ROCm component. + +* ``install_step`` - Prepare configuration to properly build ROCm component. + + ## ``RPackage`` (derives from ``ExtensionEasyBlock``) @@ -1394,6 +1385,7 @@ easyconfig parameter |description Install an R package as a separate module, or as an extension. + ### Extra easyconfig parameters specific to ``RPackage`` easyblock easyconfig parameter|description |default value @@ -1421,6 +1413,7 @@ Support for installing RPM files. - sources is a list of rpms - installation is with --nodeps (so the sources list has to be complete) + ### Extra easyconfig parameters specific to ``Rpm`` easyblock easyconfig parameter|description |default value @@ -1437,8 +1430,6 @@ easyconfig parameter|description ### Customised steps in ``Rpm`` easyblock -* ``build_step`` - The type of the None singleton. - * ``configure_step`` - Custom configuration procedure for RPMs: rebuild RPMs for relocation if required. * ``install_step`` - Custom installation procedure for RPMs into a custom prefix. @@ -1497,6 +1488,7 @@ The compiler is expected to be available in $PATH, required libraries are assume Specifying 'system' as a version leads to using the derived compiler version in the generated module; if an actual version is specified, it is checked against the derived version of the system compiler that was found. + ### Extra easyconfig parameters specific to ``SystemCompiler`` easyblock easyconfig parameter |description |default value @@ -1510,15 +1502,6 @@ easyconfig parameter |description ``sanity_check_all_components``|Enable sanity checks for all components |``False`` ``sanity_check_components`` |List of components for which to run sanity checks |``[]`` -### Customised steps in ``SystemCompiler`` easyblock - -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - -* ``install_step`` - The type of the None singleton. - - ## ``SystemCompilerGCC`` (derives from [``SystemCompiler``](#systemcompiler), ``EB_GCC``) @@ -1531,6 +1514,7 @@ The compiler is expected to be available in $PATH, required libraries are assume Specifying 'system' as a version leads to using the derived compiler version in the generated module; if an actual version is specified, it is checked against the derived version of the system compiler that was found. + ### Extra easyconfig parameters specific to ``SystemCompilerGCC`` easyblock easyconfig parameter |description |default value @@ -1572,15 +1556,6 @@ easyconfig parameter |description ``withnvptx`` |Build GCC with NVPTX offload support |``False`` ``withppl`` |Build GCC with PPL support |``False`` -### Customised steps in ``SystemCompilerGCC`` easyblock - -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - -* ``install_step`` - The type of the None singleton. - - ## ``SystemMPI`` (derives from [``Bundle``](#bundle), [``ConfigureMake``](#configuremake), ``EB_impi``) @@ -1593,6 +1568,7 @@ The mpi compiler is expected to be available in $PATH, required libraries are as Specifying 'system' as a version leads to using the derived mpi version in the generated module; if an actual version is specified, it is checked against the derived version of the system mpi that was found. + ### Extra easyconfig parameters specific to ``SystemMPI`` easyblock easyconfig parameter |description |default value @@ -1629,15 +1605,6 @@ easyconfig parameter |description ``test_cmd`` |Test command to use ('runtest' value is appended, default: 'make') |``None`` ``unrecognized_configure_options``|Action to do when unrecognized options passed to ./configure are detected, defaults to aborting the build. Can be set to 'warn' or 'ignore' (NOT RECOMMENDED! It might hide actual errors e.g. misspelling of intended or changed options)|``"error"`` -### Customised steps in ``SystemMPI`` easyblock - -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - -* ``install_step`` - The type of the None singleton. - - ## ``Tarball`` (derives from ``ExtensionEasyBlock``) @@ -1645,6 +1612,7 @@ easyconfig parameter |description Precompiled software supplied as a tarball: will unpack binary and copy it to the install dir + ### Extra easyconfig parameters specific to ``Tarball`` easyblock easyconfig parameter|description |default value @@ -1681,15 +1649,6 @@ easyconfig parameter |description ``sanity_check_components`` |List of components for which to run sanity checks |``[]`` ``set_env_external_modules`` |Include setenv statements for toolchain components that use an external module, based on available metadata|``False`` -### Customised steps in ``Toolchain`` easyblock - -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - -* ``install_step`` - The type of the None singleton. - - ## ``VSCPythonPackage`` (derives from [``VersionIndependentPythonPackage``](#versionindependentpythonpackage)) @@ -1704,6 +1663,7 @@ easyconfig parameter |description ``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` ``click_autocomplete_bins``|List of command line tools installed by the package that use the 'click' package and for which autocompletion scripts should be generated |``None`` ``download_dep_fail`` |Fail if downloaded dependencies are detected. Defaults to True unless 'use_pip_for_deps' or 'use_pip_requirement' is True. |``None`` +``dummy_package`` |Install a dummy package empty in contents but visible by Python package managers such as pip |``None`` ``fix_python_shebang_for`` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` @@ -1717,6 +1677,7 @@ easyconfig parameter |description ``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` ``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` ``runtest`` |Run unit tests. |``True`` +``sanity_check_pip_list`` |Run 'python -m pip list' to ensure specified package names and versions are correct. |``None`` ``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` ``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` ``testinstall`` |Install into temporary directory prior to running the tests. |``False`` @@ -1729,15 +1690,6 @@ easyconfig parameter |description ``use_pip_requirement`` |Install using 'python -m pip install --requirement'. The sources is expected to be the requirements file. |``False`` ``zipped_egg`` |Install as a zipped eggs |``False`` -### Customised steps in ``VSCPythonPackage`` easyblock - -* ``build_step`` - The type of the None singleton. - -* ``configure_step`` - The type of the None singleton. - -* ``install_step`` - The type of the None singleton. - - ## ``VersionIndependentPythonPackage`` (derives from [``PythonPackage``](#pythonpackage)) @@ -1752,6 +1704,7 @@ easyconfig parameter |description ``check_ldshared`` |Check Python value of $LDSHARED, correct if needed to "$CC -shared" |``None`` ``click_autocomplete_bins``|List of command line tools installed by the package that use the 'click' package and for which autocompletion scripts should be generated |``None`` ``download_dep_fail`` |Fail if downloaded dependencies are detected. Defaults to True unless 'use_pip_for_deps' or 'use_pip_requirement' is True. |``None`` +``dummy_package`` |Install a dummy package empty in contents but visible by Python package managers such as pip |``None`` ``fix_python_shebang_for`` |List of files for which Python shebang should be fixed to '#!/usr/bin/env python' (glob patterns supported) (default: ['bin/*']) |``['bin/*']`` ``install_src`` |Source path to pass to the install command (e.g. a whl file).Defaults to '.' for unpacked sources or the first source file specified |``None`` ``install_target`` |Option to pass to setup.py |``"install"`` @@ -1765,6 +1718,7 @@ easyconfig parameter |description ``req_py_majver`` |Required major Python version (only relevant when using system Python) |``None`` ``req_py_minver`` |Required minor Python version (only relevant when using system Python) |``None`` ``runtest`` |Run unit tests. |``True`` +``sanity_check_pip_list`` |Run 'python -m pip list' to ensure specified package names and versions are correct. |``None`` ``sanity_pip_check`` |Run 'python -m pip check' to ensure all required Python packages are installed and check for any package with an invalid (0.0.0) version. |``True`` ``source_urls`` |List of URLs for source files |``['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s']`` ``testinstall`` |Install into temporary directory prior to running the tests. |``False`` @@ -1793,6 +1747,7 @@ easyconfig parameter |description Support for building and installing applications with waf + ### Customised steps in ``Waf`` easyblock * ``build_step`` - Build with ./waf build diff --git a/docs/version-specific/supported-software/a/ABINIT.md b/docs/version-specific/supported-software/a/ABINIT.md index beda8ee36a..e60adc59d1 100644 --- a/docs/version-specific/supported-software/a/ABINIT.md +++ b/docs/version-specific/supported-software/a/ABINIT.md @@ -15,7 +15,6 @@ version | toolchain ``9.10.3`` | ``foss/2023a`` ``9.10.3`` | ``intel/2022a`` ``9.6.2`` | ``foss/2022a`` -``9.6.2`` | ``intel/2021b`` ``9.6.2`` | ``intel/2022a`` diff --git a/docs/version-specific/supported-software/a/ADIOS2.md b/docs/version-specific/supported-software/a/ADIOS2.md new file mode 100644 index 0000000000..624a2464f4 --- /dev/null +++ b/docs/version-specific/supported-software/a/ADIOS2.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# ADIOS2 + +This is ADIOS2: The Adaptable Input/Output (I/O) System. ADIOS2 is developed as part of the United States Department of Energy's Exascale Computing Project. It is a framework for scientific data I/O to publish and subscribe to data when and where required. ADIOS2 transports data as groups of self-describing variables and attributes across different media types (such as files, wide-area-networks, and remote direct memory access) using a common application programming interface for all transport modes. ADIOS2 can be used on supercomputers, cloud systems, and personal computers. + +*homepage*: + +version | toolchain +--------|---------- +``2.10.2`` | ``foss/2025b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/a/ADOL-C.md b/docs/version-specific/supported-software/a/ADOL-C.md new file mode 100644 index 0000000000..37e380aa58 --- /dev/null +++ b/docs/version-specific/supported-software/a/ADOL-C.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# ADOL-C + +The package ADOL-C (Automatic Differentiation by OverLoading in C++) facilitates the evaluation of first and higher derivatives of vector functions that are defined by computer programs written in C or C++. The resulting derivative evaluation routines may be called from C/C++, Fortran, or any other language that can be linked with C. + +*homepage*: + +version | toolchain +--------|---------- +``2.7.2`` | ``gompi/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/a/AGAT.md b/docs/version-specific/supported-software/a/AGAT.md index eff3655f61..9b9daa7be5 100644 --- a/docs/version-specific/supported-software/a/AGAT.md +++ b/docs/version-specific/supported-software/a/AGAT.md @@ -10,7 +10,6 @@ AGAT: Another GTF/GFF Analysis Toolkit. Suite of tools to handle gene annotation version | toolchain --------|---------- -``0.9.2`` | ``GCC/11.2.0`` ``1.1.0`` | ``GCC/12.2.0`` ``1.4.0`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/a/AMOS.md b/docs/version-specific/supported-software/a/AMOS.md index 6988926b36..185f0cf7a7 100644 --- a/docs/version-specific/supported-software/a/AMOS.md +++ b/docs/version-specific/supported-software/a/AMOS.md @@ -10,7 +10,6 @@ The AMOS consortium is committed to the development of open-source whole genome version | toolchain --------|---------- -``3.1.0`` | ``foss/2021b`` ``3.1.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/a/AMRFinderPlus.md b/docs/version-specific/supported-software/a/AMRFinderPlus.md index 2b90a7fb60..c16db66389 100644 --- a/docs/version-specific/supported-software/a/AMRFinderPlus.md +++ b/docs/version-specific/supported-software/a/AMRFinderPlus.md @@ -10,7 +10,6 @@ This software and the accompanying database are designed to find acquired antimi version | toolchain --------|---------- -``3.11.18`` | ``gompi/2021b`` ``3.11.18`` | ``gompi/2022b`` ``3.12.8`` | ``gompi/2023a`` ``4.0.23`` | ``gompi/2024a`` diff --git a/docs/version-specific/supported-software/a/AMS.md b/docs/version-specific/supported-software/a/AMS.md index 3d84de57f6..79fe3f107b 100644 --- a/docs/version-specific/supported-software/a/AMS.md +++ b/docs/version-specific/supported-software/a/AMS.md @@ -10,7 +10,6 @@ The Amsterdam Modeling Suite (AMS) provides a comprehensive set of modules for c version | versionsuffix | toolchain --------|---------------|---------- -``2022.102`` | ``-intelmpi`` | ``iimpi/2021b`` ``2023.101`` | ``-intelmpi`` | ``iimpi/2022a`` ``2023.104`` | ``-intelmpi`` | ``iimpi/2022b`` diff --git a/docs/version-specific/supported-software/a/ANNOVAR.md b/docs/version-specific/supported-software/a/ANNOVAR.md index f7a7b2294f..40ef9616e3 100644 --- a/docs/version-specific/supported-software/a/ANNOVAR.md +++ b/docs/version-specific/supported-software/a/ANNOVAR.md @@ -8,11 +8,10 @@ ANNOVAR is an efficient software tool to utilize update-to-date information to f *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``20200607`` | ``-Perl-5.34.0`` | ``GCCcore/11.2.0`` -``20200607`` | | ``GCCcore/12.3.0`` -``20200607`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``20200607`` | ``GCCcore/12.3.0`` +``20200607`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ANTLR.md b/docs/version-specific/supported-software/a/ANTLR.md index e2ba8efa4b..1b74e735da 100644 --- a/docs/version-specific/supported-software/a/ANTLR.md +++ b/docs/version-specific/supported-software/a/ANTLR.md @@ -10,10 +10,10 @@ ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) is a language to version | versionsuffix | toolchain --------|---------------|---------- -``2.7.7`` | ``-Java-11`` | ``GCCcore/11.2.0`` ``2.7.7`` | ``-Java-11`` | ``GCCcore/11.3.0`` ``2.7.7`` | ``-Java-11`` | ``GCCcore/12.3.0`` ``2.7.7`` | | ``GCCcore/13.3.0`` +``2.7.7`` | | ``GCCcore/14.2.0`` ``2.7.7`` | | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/a/AOCC.md b/docs/version-specific/supported-software/a/AOCC.md index 30928db1e7..2f2d691a48 100644 --- a/docs/version-specific/supported-software/a/AOCC.md +++ b/docs/version-specific/supported-software/a/AOCC.md @@ -4,14 +4,12 @@ search: --- # AOCC -AMD Optimized C/C++ & Fortran compilers (AOCC) based on LLVM 12.0 +AMD Optimized C/C++ & Fortran compilers (AOCC) based on LLVM 13.0 *homepage*: version | toolchain --------|---------- -``3.1.0`` | ``GCCcore/11.2.0`` -``3.2.0`` | ``GCCcore/11.2.0`` ``3.2.0`` | ``GCCcore/11.3.0`` ``4.0.0`` | ``GCCcore/11.3.0`` ``4.0.0`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/a/AOCL-BLAS.md b/docs/version-specific/supported-software/a/AOCL-BLAS.md index 239956d08e..fe05cacf05 100644 --- a/docs/version-specific/supported-software/a/AOCL-BLAS.md +++ b/docs/version-specific/supported-software/a/AOCL-BLAS.md @@ -15,6 +15,7 @@ version | toolchain ``5.1`` | ``GCC/14.3.0`` ``5.1`` | ``llvm-compilers/20.1.8`` ``5.2`` | ``GCC/15.2.0`` +``5.2`` | ``llvm-compilers/21.1.8`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/APR-util.md b/docs/version-specific/supported-software/a/APR-util.md index e4f0d10d33..5ab7a1efab 100644 --- a/docs/version-specific/supported-software/a/APR-util.md +++ b/docs/version-specific/supported-software/a/APR-util.md @@ -10,7 +10,6 @@ Apache Portable Runtime (APR) util libraries. version | toolchain --------|---------- -``1.6.1`` | ``GCCcore/11.2.0`` ``1.6.1`` | ``GCCcore/11.3.0`` ``1.6.3`` | ``GCCcore/12.3.0`` ``1.6.3`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/a/APR.md b/docs/version-specific/supported-software/a/APR.md index d395ec8de8..eacbbd374e 100644 --- a/docs/version-specific/supported-software/a/APR.md +++ b/docs/version-specific/supported-software/a/APR.md @@ -10,7 +10,6 @@ Apache Portable Runtime (APR) libraries. version | toolchain --------|---------- -``1.7.0`` | ``GCCcore/11.2.0`` ``1.7.0`` | ``GCCcore/11.3.0`` ``1.7.4`` | ``GCCcore/12.3.0`` ``1.7.4`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/a/ARAGORN.md b/docs/version-specific/supported-software/a/ARAGORN.md index 4a7aeac150..44c8976733 100644 --- a/docs/version-specific/supported-software/a/ARAGORN.md +++ b/docs/version-specific/supported-software/a/ARAGORN.md @@ -11,7 +11,6 @@ a program to detect tRNA genes and tmRNA genes in nucleotide sequences version | toolchain --------|---------- ``1.2.41`` | ``GCC/14.2.0`` -``1.2.41`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ASAP3.md b/docs/version-specific/supported-software/a/ASAP3.md index e011d2edcc..a854ad0acd 100644 --- a/docs/version-specific/supported-software/a/ASAP3.md +++ b/docs/version-specific/supported-software/a/ASAP3.md @@ -12,6 +12,8 @@ version | versionsuffix | toolchain --------|---------------|---------- ``3.13.10`` | | ``foss/2025b`` ``3.13.10`` | | ``intel/2025b`` +``3.13.11`` | | ``foss/2025b`` +``3.13.11`` | | ``intel/2025b`` ``3.13.2`` | | ``foss/2023a`` ``3.13.3`` | | ``foss/2023a`` ``3.13.3`` | | ``intel/2023a`` diff --git a/docs/version-specific/supported-software/a/ASE.md b/docs/version-specific/supported-software/a/ASE.md index 695ffbfe58..0d1090c29a 100644 --- a/docs/version-specific/supported-software/a/ASE.md +++ b/docs/version-specific/supported-software/a/ASE.md @@ -10,12 +10,10 @@ ASE is a python package providing an open source Atomic Simulation Environment version | toolchain --------|---------- -``3.22.1`` | ``foss/2021b`` ``3.22.1`` | ``foss/2022a`` ``3.22.1`` | ``gfbf/2022b`` ``3.22.1`` | ``gfbf/2023a`` ``3.22.1`` | ``iimkl/2023a`` -``3.22.1`` | ``intel/2021b`` ``3.22.1`` | ``intel/2022a`` ``3.23.0`` | ``gfbf/2023a`` ``3.23.0`` | ``gfbf/2023b`` diff --git a/docs/version-specific/supported-software/a/ASTER.md b/docs/version-specific/supported-software/a/ASTER.md new file mode 100644 index 0000000000..94fa8671be --- /dev/null +++ b/docs/version-specific/supported-software/a/ASTER.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# ASTER + +Accurate Species Tree EstimatoR series; a family of optimation algorithms for species tree inference implemented in C++. + +*homepage*: + +version | toolchain +--------|---------- +``1.23`` | ``GCCcore/13.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/a/ATK.md b/docs/version-specific/supported-software/a/ATK.md index cec0bfb891..aa3bff7f09 100644 --- a/docs/version-specific/supported-software/a/ATK.md +++ b/docs/version-specific/supported-software/a/ATK.md @@ -10,7 +10,6 @@ ATK provides the set of accessibility interfaces that are implemented by other version | toolchain --------|---------- -``2.36.0`` | ``GCCcore/11.2.0`` ``2.38.0`` | ``GCCcore/11.3.0`` ``2.38.0`` | ``GCCcore/12.2.0`` ``2.38.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/a/AUGUSTUS.md b/docs/version-specific/supported-software/a/AUGUSTUS.md index 0db8cd81d1..efebd2740f 100644 --- a/docs/version-specific/supported-software/a/AUGUSTUS.md +++ b/docs/version-specific/supported-software/a/AUGUSTUS.md @@ -10,13 +10,14 @@ AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences version | toolchain --------|---------- -``3.4.0`` | ``foss/2021b`` ``3.5.0-20240612`` | ``foss/2023a`` ``3.5.0`` | ``foss/2022a`` ``3.5.0`` | ``foss/2022b`` ``3.5.0`` | ``foss/2023a`` ``3.5.0`` | ``foss/2023b`` ``3.5.0`` | ``foss/2024a`` +``3.5.0`` | ``foss/2025a`` +``3.5.0`` | ``foss/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/Abseil.md b/docs/version-specific/supported-software/a/Abseil.md index c4e885f015..0a93404a10 100644 --- a/docs/version-specific/supported-software/a/Abseil.md +++ b/docs/version-specific/supported-software/a/Abseil.md @@ -10,7 +10,6 @@ Abseil is an open-source collection of C++ library code designed to augment the version | toolchain --------|---------- -``20210324.2`` | ``GCCcore/11.2.0`` ``20230125.2`` | ``GCCcore/11.3.0`` ``20230125.2`` | ``GCCcore/12.2.0`` ``20230125.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/a/AdapterRemoval.md b/docs/version-specific/supported-software/a/AdapterRemoval.md index bb4a1199ce..fa42de3544 100644 --- a/docs/version-specific/supported-software/a/AdapterRemoval.md +++ b/docs/version-specific/supported-software/a/AdapterRemoval.md @@ -10,7 +10,6 @@ AdapterRemoval searches for and removes remnant adapter sequences from High-Thr version | toolchain --------|---------- -``2.3.2`` | ``GCC/11.2.0`` ``2.3.3`` | ``GCC/11.3.0`` ``2.3.4`` | ``GCC/14.3.0`` diff --git a/docs/version-specific/supported-software/a/Albumentations.md b/docs/version-specific/supported-software/a/Albumentations.md index 4b7aff58ba..be10058f94 100644 --- a/docs/version-specific/supported-software/a/Albumentations.md +++ b/docs/version-specific/supported-software/a/Albumentations.md @@ -10,7 +10,6 @@ Albumentations is a Python library for fast and flexible image augmentations version | versionsuffix | toolchain --------|---------------|---------- -``1.1.0`` | | ``foss/2021b`` ``1.3.0`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``1.3.0`` | | ``foss/2022a`` ``1.4.0`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/a/Alfred.md b/docs/version-specific/supported-software/a/Alfred.md index ec393ac309..a98525fa4f 100644 --- a/docs/version-specific/supported-software/a/Alfred.md +++ b/docs/version-specific/supported-software/a/Alfred.md @@ -10,7 +10,7 @@ Alfred is an efficient and versatile command-line application that computes mul version | toolchain --------|---------- -``0.2.6`` | ``GCC/11.2.0`` +``0.5.3`` | ``GCC/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/AlphaFold.md b/docs/version-specific/supported-software/a/AlphaFold.md index 99d08ea849..0ec58356af 100644 --- a/docs/version-specific/supported-software/a/AlphaFold.md +++ b/docs/version-specific/supported-software/a/AlphaFold.md @@ -10,7 +10,6 @@ AlphaFold can predict protein structures with atomic accuracy even where no simi version | versionsuffix | toolchain --------|---------------|---------- -``2.3.0`` | ``-CUDA-11.4.1`` | ``foss/2021b`` ``2.3.1`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``2.3.1`` | | ``foss/2022a`` ``2.3.2`` | ``-CUDA-12.1.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/a/Amber.md b/docs/version-specific/supported-software/a/Amber.md index d9e30c3db1..6e12653c29 100644 --- a/docs/version-specific/supported-software/a/Amber.md +++ b/docs/version-specific/supported-software/a/Amber.md @@ -6,18 +6,17 @@ search: Amber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``22.0`` | ``-AmberTools-22.3-CUDA-11.4.1`` | ``foss/2021b`` -``22.0`` | ``-AmberTools-22.3`` | ``foss/2021b`` ``22.4`` | ``-AmberTools-22.5-CUDA-11.7.0`` | ``foss/2022a`` ``24.0`` | ``-AmberTools-24.0-CUDA-12.4.0`` | ``foss/2023b`` ``24.0`` | ``-AmberTools-24.0`` | ``foss/2023b`` ``24.0`` | ``-AmberTools-24.0`` | ``foss/2024a`` ``24.3`` | ``-AmberTools-24.10-CUDA-12.1.1`` | ``foss/2023a`` ``24.3`` | ``-AmberTools-24.10`` | ``foss/2023a`` +``24.3`` | ``-CUDA-12.8.0-pmemd`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/AmberTools.md b/docs/version-specific/supported-software/a/AmberTools.md index 27e2647f8b..8b191552f4 100644 --- a/docs/version-specific/supported-software/a/AmberTools.md +++ b/docs/version-specific/supported-software/a/AmberTools.md @@ -10,9 +10,6 @@ AmberTools consists of several independently developed packages that work well b version | toolchain --------|---------- -``21`` | ``intel/2021b`` -``21.12`` | ``foss/2021b`` -``22.3`` | ``foss/2021b`` ``23.6`` | ``foss/2023a`` ``24.10`` | ``foss/2024a`` ``25.2`` | ``foss/2025a`` diff --git a/docs/version-specific/supported-software/a/Anaconda3.md b/docs/version-specific/supported-software/a/Anaconda3.md index 9224c7a32e..dde3af548e 100644 --- a/docs/version-specific/supported-software/a/Anaconda3.md +++ b/docs/version-specific/supported-software/a/Anaconda3.md @@ -10,7 +10,6 @@ Built to complement the rich, open source Python community, the Anaconda platfor version | toolchain --------|---------- -``2020.11`` | ``system`` ``2021.05`` | ``system`` ``2021.11`` | ``system`` ``2022.05`` | ``system`` diff --git a/docs/version-specific/supported-software/a/Arb.md b/docs/version-specific/supported-software/a/Arb.md index a9f7e7bcc3..af1de88927 100644 --- a/docs/version-specific/supported-software/a/Arb.md +++ b/docs/version-specific/supported-software/a/Arb.md @@ -10,7 +10,6 @@ Arb is a C library for arbitrary-precision interval arithmetic. It has full sup version | toolchain --------|---------- -``2.22.1`` | ``foss/2021b`` ``2.23.0`` | ``gfbf/2022a`` diff --git a/docs/version-specific/supported-software/a/Arcade-Learning-Environment.md b/docs/version-specific/supported-software/a/Arcade-Learning-Environment.md index 60de9979e3..a97ca57abd 100644 --- a/docs/version-specific/supported-software/a/Arcade-Learning-Environment.md +++ b/docs/version-specific/supported-software/a/Arcade-Learning-Environment.md @@ -10,7 +10,6 @@ The Arcade Learning Environment (ALE) is a simple framework that allows research version | toolchain --------|---------- -``0.7.3`` | ``foss/2021b`` ``0.8.1`` | ``foss/2022a`` ``0.8.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/a/ArchR.md b/docs/version-specific/supported-software/a/ArchR.md index 7655a64f3e..42dc18ae01 100644 --- a/docs/version-specific/supported-software/a/ArchR.md +++ b/docs/version-specific/supported-software/a/ArchR.md @@ -10,7 +10,6 @@ ArchR is a full-featured R package for processing and analyzing single-cell ATAC version | versionsuffix | toolchain --------|---------------|---------- -``1.0.1`` | ``-R-4.1.2`` | ``foss/2021b`` ``1.0.2-20220704`` | ``-R-4.3.2`` | ``foss/2023a`` ``1.0.2`` | ``-R-4.2.2`` | ``foss/2022b`` ``1.0.2`` | ``-R-4.3.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/a/Archive-Zip.md b/docs/version-specific/supported-software/a/Archive-Zip.md index d6afb11c53..f17e1afb44 100644 --- a/docs/version-specific/supported-software/a/Archive-Zip.md +++ b/docs/version-specific/supported-software/a/Archive-Zip.md @@ -10,7 +10,6 @@ Provide an interface to ZIP archive files. version | toolchain --------|---------- -``1.68`` | ``GCCcore/11.2.0`` ``1.68`` | ``GCCcore/11.3.0`` ``1.68`` | ``GCCcore/12.2.0`` ``1.68`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/a/ArmComputeLibrary.md b/docs/version-specific/supported-software/a/ArmComputeLibrary.md new file mode 100644 index 0000000000..84eeac2931 --- /dev/null +++ b/docs/version-specific/supported-software/a/ArmComputeLibrary.md @@ -0,0 +1,21 @@ +--- +search: + boost: 0.5 +--- +# ArmComputeLibrary + +The Arm Compute Library is a collection of low-level machine learning functions optimized for Arm® Cortex®-A, Arm® Neoverse® and Arm® Mali™ GPUs architectures. + +*homepage*: + +version | toolchain +--------|---------- +``23.05.1`` | ``GCCcore/12.3.0`` +``23.08`` | ``GCCcore/13.2.0`` +``25.02`` | ``GCCcore/13.3.0`` +``25.02`` | ``GCCcore/14.2.0`` +``25.02`` | ``GCCcore/14.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/a/Arriba.md b/docs/version-specific/supported-software/a/Arriba.md index e312476306..7e2e4ac7e2 100644 --- a/docs/version-specific/supported-software/a/Arriba.md +++ b/docs/version-specific/supported-software/a/Arriba.md @@ -4,14 +4,12 @@ search: --- # Arriba -Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data. It was developed for use in a clinical research setting. Therefore, short runtimes and high sensitivity were important design criteria. +Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data. It was developed for the use in a clinical research setting. Therefore, short runtimes and high sensitivity were important design criteria. *homepage*: version | toolchain --------|---------- -``2.2.1`` | ``GCC/11.2.0`` -``2.3.0`` | ``GCC/11.2.0`` ``2.4.0`` | ``GCC/12.2.0`` ``2.5.1`` | ``GCC/14.3.0`` diff --git a/docs/version-specific/supported-software/a/Arrow.md b/docs/version-specific/supported-software/a/Arrow.md index d9ab4f4d74..c11d0b3008 100644 --- a/docs/version-specific/supported-software/a/Arrow.md +++ b/docs/version-specific/supported-software/a/Arrow.md @@ -16,8 +16,7 @@ version | toolchain ``17.0.0`` | ``gfbf/2024a`` ``22.0.0`` | ``gfbf/2025a`` ``22.0.0`` | ``gfbf/2025b`` -``6.0.0`` | ``foss/2021b`` -``8.0.0`` | ``foss/2021b`` +``22.0.0`` | ``iimkl/2025b`` ``8.0.0`` | ``foss/2022.05`` ``8.0.0`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/a/ArviZ.md b/docs/version-specific/supported-software/a/ArviZ.md index 39dfcb41a8..4052915902 100644 --- a/docs/version-specific/supported-software/a/ArviZ.md +++ b/docs/version-specific/supported-software/a/ArviZ.md @@ -10,8 +10,6 @@ Exploratory analysis of Bayesian models with Python version | toolchain --------|---------- -``0.11.4`` | ``foss/2021b`` -``0.11.4`` | ``intel/2021b`` ``0.12.1`` | ``foss/2022a`` ``0.12.1`` | ``intel/2022a`` ``0.16.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/a/Austin.md b/docs/version-specific/supported-software/a/Austin.md index 6697b378f5..a6afb3c779 100644 --- a/docs/version-specific/supported-software/a/Austin.md +++ b/docs/version-specific/supported-software/a/Austin.md @@ -10,7 +10,6 @@ Austin is a Python frame stack sampler for CPython written in pure C. version | toolchain --------|---------- -``3.2.0`` | ``GCCcore/11.2.0`` ``3.2.0`` | ``system`` diff --git a/docs/version-specific/supported-software/a/AutoDock-Vina.md b/docs/version-specific/supported-software/a/AutoDock-Vina.md index f58a96e910..6f26e4635c 100644 --- a/docs/version-specific/supported-software/a/AutoDock-Vina.md +++ b/docs/version-specific/supported-software/a/AutoDock-Vina.md @@ -11,7 +11,6 @@ AutoDock Vina is an open-source program for doing molecular docking. version | versionsuffix | toolchain --------|---------------|---------- ``1.1.2`` | ``-linux_x86`` | ``system`` -``1.2.3`` | | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/Autoconf.md b/docs/version-specific/supported-software/a/Autoconf.md index 2812023404..b999b55331 100644 --- a/docs/version-specific/supported-software/a/Autoconf.md +++ b/docs/version-specific/supported-software/a/Autoconf.md @@ -11,7 +11,6 @@ Autoconf is an extensible package of M4 macros that produce shell scripts to au version | toolchain --------|---------- ``2.69`` | ``system`` -``2.71`` | ``GCCcore/11.2.0`` ``2.71`` | ``GCCcore/11.3.0`` ``2.71`` | ``GCCcore/12.2.0`` ``2.71`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/a/Automake.md b/docs/version-specific/supported-software/a/Automake.md index a4a0b86772..044c1494d8 100644 --- a/docs/version-specific/supported-software/a/Automake.md +++ b/docs/version-specific/supported-software/a/Automake.md @@ -10,7 +10,6 @@ Automake: GNU Standards-compliant Makefile generator version | toolchain --------|---------- -``1.16.4`` | ``GCCcore/11.2.0`` ``1.16.5`` | ``GCCcore/11.3.0`` ``1.16.5`` | ``GCCcore/12.2.0`` ``1.16.5`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/a/Autotools.md b/docs/version-specific/supported-software/a/Autotools.md index d46fea7027..de8e3e51f5 100644 --- a/docs/version-specific/supported-software/a/Autotools.md +++ b/docs/version-specific/supported-software/a/Autotools.md @@ -10,7 +10,6 @@ This bundle collect the standard GNU build tools: Autoconf, Automake and libtoo version | toolchain --------|---------- -``20210726`` | ``GCCcore/11.2.0`` ``20220317`` | ``GCCcore/11.3.0`` ``20220317`` | ``GCCcore/12.2.0`` ``20220317`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/a/adjustText.md b/docs/version-specific/supported-software/a/adjustText.md index 66d866ff1d..3ac00dcd21 100644 --- a/docs/version-specific/supported-software/a/adjustText.md +++ b/docs/version-specific/supported-software/a/adjustText.md @@ -10,7 +10,6 @@ A small library for automatically adjustment of text position in matplotlib plot version | toolchain --------|---------- -``0.7.3`` | ``foss/2021b`` ``0.7.3`` | ``foss/2022b`` ``0.7.3`` | ``foss/2023a`` ``1.1.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/a/aiohttp.md b/docs/version-specific/supported-software/a/aiohttp.md index 6f92a2d4a1..8d056fbed5 100644 --- a/docs/version-specific/supported-software/a/aiohttp.md +++ b/docs/version-specific/supported-software/a/aiohttp.md @@ -13,7 +13,6 @@ version | toolchain ``3.10.10`` | ``GCCcore/13.3.0`` ``3.12.13`` | ``GCCcore/14.2.0`` ``3.12.15`` | ``GCCcore/14.3.0`` -``3.8.1`` | ``GCCcore/11.2.0`` ``3.8.3`` | ``GCCcore/11.3.0`` ``3.8.5`` | ``GCCcore/12.2.0`` ``3.8.5`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/a/alevin-fry.md b/docs/version-specific/supported-software/a/alevin-fry.md index d902f91226..00cdf15565 100644 --- a/docs/version-specific/supported-software/a/alevin-fry.md +++ b/docs/version-specific/supported-software/a/alevin-fry.md @@ -10,7 +10,6 @@ alevin-fry is an efficient and flexible tool for processing single-cell sequenci version | toolchain --------|---------- -``0.4.3`` | ``GCCcore/11.2.0`` ``0.9.0`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/a/alsa-lib.md b/docs/version-specific/supported-software/a/alsa-lib.md index 5e9a7d20f9..1ac84abd87 100644 --- a/docs/version-specific/supported-software/a/alsa-lib.md +++ b/docs/version-specific/supported-software/a/alsa-lib.md @@ -14,7 +14,6 @@ version | toolchain ``1.2.11`` | ``GCCcore/13.3.0`` ``1.2.14`` | ``GCCcore/14.2.0`` ``1.2.14`` | ``GCCcore/14.3.0`` -``1.2.8`` | ``GCCcore/11.2.0`` ``1.2.8`` | ``GCCcore/11.3.0`` ``1.2.9`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/a/angsd.md b/docs/version-specific/supported-software/a/angsd.md index 51015faced..d3eec8255d 100644 --- a/docs/version-specific/supported-software/a/angsd.md +++ b/docs/version-specific/supported-software/a/angsd.md @@ -10,7 +10,6 @@ Program for analysing NGS data. version | toolchain --------|---------- -``0.940`` | ``GCC/11.2.0`` ``0.940`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/a/anndata.md b/docs/version-specific/supported-software/a/anndata.md index b35a2c6243..51c6bbc215 100644 --- a/docs/version-specific/supported-software/a/anndata.md +++ b/docs/version-specific/supported-software/a/anndata.md @@ -16,7 +16,6 @@ version | toolchain ``0.11.4`` | ``foss/2024a`` ``0.12.3`` | ``foss/2025a`` ``0.8.0`` | ``foss/2022a`` -``0.9.2`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/ant.md b/docs/version-specific/supported-software/a/ant.md index a84389abf2..7af637f5f1 100644 --- a/docs/version-specific/supported-software/a/ant.md +++ b/docs/version-specific/supported-software/a/ant.md @@ -17,7 +17,6 @@ version | versionsuffix | toolchain ``1.10.14`` | ``-Java-21`` | ``system`` ``1.10.15`` | ``-Java-17`` | ``system`` ``1.10.15`` | ``-Java-21`` | ``system`` -``1.10.9`` | ``-Java-11`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/any2fasta.md b/docs/version-specific/supported-software/a/any2fasta.md index 3eb024d19b..700e59cc2c 100644 --- a/docs/version-specific/supported-software/a/any2fasta.md +++ b/docs/version-specific/supported-software/a/any2fasta.md @@ -10,7 +10,6 @@ Convert various sequence formats to FASTA version | toolchain --------|---------- -``0.4.2`` | ``GCCcore/11.2.0`` ``0.4.2`` | ``GCCcore/12.3.0`` ``0.4.2`` | ``GCCcore/13.2.0`` ``0.8.1`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/a/archspec.md b/docs/version-specific/supported-software/a/archspec.md index f9aec89ba0..3c42d21927 100644 --- a/docs/version-specific/supported-software/a/archspec.md +++ b/docs/version-specific/supported-software/a/archspec.md @@ -10,7 +10,6 @@ A library for detecting, labeling, and reasoning about microarchitectures version | toolchain --------|---------- -``0.1.3`` | ``GCCcore/11.2.0`` ``0.1.4`` | ``GCCcore/11.3.0`` ``0.2.0`` | ``GCCcore/12.2.0`` ``0.2.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/a/argtable.md b/docs/version-specific/supported-software/a/argtable.md index e4bcdcb914..1f836cd9b0 100644 --- a/docs/version-specific/supported-software/a/argtable.md +++ b/docs/version-specific/supported-software/a/argtable.md @@ -10,9 +10,9 @@ Argtable is an ANSI C library for parsing GNU style command line options with a version | toolchain --------|---------- -``2.13`` | ``GCCcore/11.2.0`` ``2.13`` | ``GCCcore/12.3.0`` ``2.13`` | ``GCCcore/13.3.0`` +``2.13`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/arpack-ng.md b/docs/version-specific/supported-software/a/arpack-ng.md index 00d5125797..ab14f40186 100644 --- a/docs/version-specific/supported-software/a/arpack-ng.md +++ b/docs/version-specific/supported-software/a/arpack-ng.md @@ -10,7 +10,6 @@ ARPACK is a collection of Fortran77 subroutines designed to solve large scale ei version | toolchain --------|---------- -``3.8.0`` | ``foss/2021b`` ``3.8.0`` | ``foss/2022a`` ``3.8.0`` | ``foss/2022b`` ``3.9.0`` | ``foss/2023a`` @@ -20,6 +19,7 @@ version | toolchain ``3.9.1`` | ``foss/2025a`` ``3.9.1`` | ``foss/2025b`` ``3.9.1`` | ``intel/2025b`` +``3.9.1`` | ``lfoss/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/arrow-R.md b/docs/version-specific/supported-software/a/arrow-R.md index 0e2eaf2fea..0a50bae2b2 100644 --- a/docs/version-specific/supported-software/a/arrow-R.md +++ b/docs/version-specific/supported-software/a/arrow-R.md @@ -16,8 +16,6 @@ version | versionsuffix | toolchain ``17.0.0.1`` | ``-R-4.4.2`` | ``foss/2024a`` ``22.0.0`` | ``-R-4.5.1`` | ``foss/2025a`` ``22.0.0`` | ``-R-4.5.2`` | ``foss/2025b`` -``6.0.0.2`` | ``-R-4.1.2`` | ``foss/2021b`` -``6.0.0.2`` | ``-R-4.2.0`` | ``foss/2021b`` ``8.0.0`` | ``-R-4.2.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/a/astropy.md b/docs/version-specific/supported-software/a/astropy.md index a7bca9cc70..f8996af6d1 100644 --- a/docs/version-specific/supported-software/a/astropy.md +++ b/docs/version-specific/supported-software/a/astropy.md @@ -4,13 +4,12 @@ search: --- # astropy -The Astropy Project is a community effort to develop a single core package for Astronomy in Python and foster interoperability between Python astronomy packages. +The Astropy Project is a community effort to develop a common core package for Astronomy in Python and foster an ecosystem of interoperable astronomy packages. The Astropy community is committed to supporting diversity and inclusion. *homepage*: version | toolchain --------|---------- -``4.3.1`` | ``foss/2021b`` ``5.1.1`` | ``foss/2022a`` ``5.1.1`` | ``intel/2022a`` ``5.2.2`` | ``gfbf/2022b`` diff --git a/docs/version-specific/supported-software/a/at-spi2-atk.md b/docs/version-specific/supported-software/a/at-spi2-atk.md index 49db4cc768..e6e789820d 100644 --- a/docs/version-specific/supported-software/a/at-spi2-atk.md +++ b/docs/version-specific/supported-software/a/at-spi2-atk.md @@ -10,7 +10,6 @@ AT-SPI 2 toolkit bridge version | toolchain --------|---------- -``2.38.0`` | ``GCCcore/11.2.0`` ``2.38.0`` | ``GCCcore/11.3.0`` ``2.38.0`` | ``GCCcore/12.2.0`` ``2.38.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/a/at-spi2-core.md b/docs/version-specific/supported-software/a/at-spi2-core.md index fcda49f097..6c5c1dc4af 100644 --- a/docs/version-specific/supported-software/a/at-spi2-core.md +++ b/docs/version-specific/supported-software/a/at-spi2-core.md @@ -10,7 +10,6 @@ Assistive Technology Service Provider Interface. version | toolchain --------|---------- -``2.40.3`` | ``GCCcore/11.2.0`` ``2.44.1`` | ``GCCcore/11.3.0`` ``2.46.0`` | ``GCCcore/12.2.0`` ``2.49.91`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/a/atools.md b/docs/version-specific/supported-software/a/atools.md index 28e1e5d1f4..c0d874b2b6 100644 --- a/docs/version-specific/supported-software/a/atools.md +++ b/docs/version-specific/supported-software/a/atools.md @@ -8,12 +8,10 @@ Tools to make using job arrays a lot more convenient. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``1.4.8`` | ``-Python-2.7.18`` | ``GCCcore/11.2.0`` -``1.5.1`` | | ``GCCcore/11.2.0`` -``1.5.1`` | | ``GCCcore/12.3.0`` -``1.5.1`` | | ``GCCcore/13.2.0`` +version | toolchain +--------|---------- +``1.5.1`` | ``GCCcore/12.3.0`` +``1.5.1`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/attr.md b/docs/version-specific/supported-software/a/attr.md index 2de8b639aa..50e98bb495 100644 --- a/docs/version-specific/supported-software/a/attr.md +++ b/docs/version-specific/supported-software/a/attr.md @@ -10,7 +10,6 @@ Commands for Manipulating Filesystem Extended Attributes version | toolchain --------|---------- -``2.5.1`` | ``GCCcore/11.2.0`` ``2.5.1`` | ``GCCcore/11.3.0`` ``2.5.1`` | ``GCCcore/12.3.0`` ``2.5.2`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/a/attrdict3.md b/docs/version-specific/supported-software/a/attrdict3.md index 19a8d5a99d..09e5309a15 100644 --- a/docs/version-specific/supported-software/a/attrdict3.md +++ b/docs/version-specific/supported-software/a/attrdict3.md @@ -10,10 +10,10 @@ AttrDict is a Python library that provides mapping objects that allow their elem version | toolchain --------|---------- -``2.0.2`` | ``GCCcore/11.2.0`` ``2.0.2`` | ``GCCcore/11.3.0`` ``2.0.2`` | ``GCCcore/12.3.0`` ``2.0.2`` | ``GCCcore/14.2.0`` +``2.0.2`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/a/index.md b/docs/version-specific/supported-software/a/index.md index 318fb24be1..37d442cb32 100644 --- a/docs/version-specific/supported-software/a/index.md +++ b/docs/version-specific/supported-software/a/index.md @@ -20,8 +20,10 @@ search: * [ACTC](ACTC.md) * [AdapterRemoval](AdapterRemoval.md) * [AdaptiveCpp](AdaptiveCpp.md) + * [ADIOS2](ADIOS2.md) * [adjustText](adjustText.md) * [ADMIXTURE](ADMIXTURE.md) + * [ADOL-C](ADOL-C.md) * [Advisor](Advisor.md) * [AEDT](AEDT.md) * [affinity](affinity.md) @@ -58,7 +60,6 @@ search: * [AMGX](AMGX.md) * [AMICA](AMICA.md) * [AMOS](AMOS.md) - * [AMPtk](AMPtk.md) * [AMRFinderPlus](AMRFinderPlus.md) * [AMS](AMS.md) * [Anaconda3](Anaconda3.md) @@ -93,10 +94,10 @@ search: * [ArchR](ArchR.md) * [archspec](archspec.md) * [AreTomo2](AreTomo2.md) - * [ARGoS](ARGoS.md) * [argtable](argtable.md) * [aria2](aria2.md) * [Armadillo](Armadillo.md) + * [ArmComputeLibrary](ArmComputeLibrary.md) * [arpack-ng](arpack-ng.md) * [Arriba](Arriba.md) * [Arrow](Arrow.md) @@ -111,6 +112,7 @@ search: * [ASF-SearchAPI](ASF-SearchAPI.md) * [assembly-stats](assembly-stats.md) * [assimp](assimp.md) + * [ASTER](ASTER.md) * [astro-tulips](astro-tulips.md) * [astropy](astropy.md) * [astropy-testing](astropy-testing.md) @@ -138,7 +140,6 @@ search: * [autoplotly](autoplotly.md) * [Autotools](Autotools.md) * [Avogadro2](Avogadro2.md) - * [avro-cpp](avro-cpp.md) * [AWS-SDK](AWS-SDK.md) * [awscli](awscli.md) * [Ax](Ax.md) diff --git a/docs/version-specific/supported-software/b/BBMap.md b/docs/version-specific/supported-software/b/BBMap.md index 1d3afca153..800a9fb7fd 100644 --- a/docs/version-specific/supported-software/b/BBMap.md +++ b/docs/version-specific/supported-software/b/BBMap.md @@ -10,7 +10,6 @@ BBMap short read aligner, and other bioinformatic tools. version | toolchain --------|---------- -``38.98`` | ``GCC/11.2.0`` ``39.01`` | ``GCC/11.3.0`` ``39.01`` | ``GCC/12.2.0`` ``39.19`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/b/BCFtools.md b/docs/version-specific/supported-software/b/BCFtools.md index 2786827221..03aaca5804 100644 --- a/docs/version-specific/supported-software/b/BCFtools.md +++ b/docs/version-specific/supported-software/b/BCFtools.md @@ -10,7 +10,6 @@ Samtools is a suite of programs for interacting with high-throughput sequencing version | toolchain --------|---------- -``1.14`` | ``GCC/11.2.0`` ``1.15.1`` | ``GCC/11.3.0`` ``1.17`` | ``GCC/12.2.0`` ``1.18`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/b/BDBag.md b/docs/version-specific/supported-software/b/BDBag.md index e26e13a1c5..04260be64e 100644 --- a/docs/version-specific/supported-software/b/BDBag.md +++ b/docs/version-specific/supported-software/b/BDBag.md @@ -10,7 +10,6 @@ The bdbag utilities are a collection of software programs for working with BagIt version | toolchain --------|---------- -``1.6.3`` | ``intel/2021b`` ``1.7.3`` | ``foss/2023a`` ``1.8.0`` | ``foss/2025a`` diff --git a/docs/version-specific/supported-software/b/BEDOPS.md b/docs/version-specific/supported-software/b/BEDOPS.md index 52eccfb6c1..08942416fb 100644 --- a/docs/version-specific/supported-software/b/BEDOPS.md +++ b/docs/version-specific/supported-software/b/BEDOPS.md @@ -11,9 +11,9 @@ BEDOPS is an open-source command-line toolkit that performs highly efficient and version | toolchain --------|---------- ``2.4.35`` | ``foss/2022b`` -``2.4.41`` | ``foss/2021b`` ``2.4.41`` | ``foss/2023a`` ``2.4.41`` | ``foss/2023b`` +``2.4.42`` | ``foss/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BEDTools.md b/docs/version-specific/supported-software/b/BEDTools.md index 07a77f02e1..fc1d345e66 100644 --- a/docs/version-specific/supported-software/b/BEDTools.md +++ b/docs/version-specific/supported-software/b/BEDTools.md @@ -10,7 +10,6 @@ BEDTools: a powerful toolset for genome arithmetic. The BEDTools utilities allow version | toolchain --------|---------- -``2.30.0`` | ``GCC/11.2.0`` ``2.30.0`` | ``GCC/11.3.0`` ``2.30.0`` | ``GCC/12.2.0`` ``2.31.0`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/b/BGEN-enkre.md b/docs/version-specific/supported-software/b/BGEN-enkre.md index 689c0a60c7..0cfe2a95b0 100644 --- a/docs/version-specific/supported-software/b/BGEN-enkre.md +++ b/docs/version-specific/supported-software/b/BGEN-enkre.md @@ -10,7 +10,6 @@ This repository contains a reference implementation of the BGEN format, written version | toolchain --------|---------- -``1.1.7`` | ``GCC/11.2.0`` ``1.1.7`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/b/BLAST+.md b/docs/version-specific/supported-software/b/BLAST+.md index f30355114a..5918bd718d 100644 --- a/docs/version-specific/supported-software/b/BLAST+.md +++ b/docs/version-specific/supported-software/b/BLAST+.md @@ -10,7 +10,6 @@ Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing prim version | toolchain --------|---------- -``2.12.0`` | ``gompi/2021b`` ``2.13.0`` | ``gompi/2022a`` ``2.14.0`` | ``gompi/2022b`` ``2.14.1`` | ``gompi/2023a`` @@ -18,7 +17,6 @@ version | toolchain ``2.16.0`` | ``gompi/2024a`` ``2.17.0`` | ``gompi/2025a`` ``2.17.0`` | ``gompi/2025b`` -``2.9.0`` | ``gompi/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BLAT.md b/docs/version-specific/supported-software/b/BLAT.md index 55fcee0410..a6c273ef89 100644 --- a/docs/version-specific/supported-software/b/BLAT.md +++ b/docs/version-specific/supported-software/b/BLAT.md @@ -10,7 +10,6 @@ BLAT on DNA is designed to quickly find sequences of 95% and greater similarity version | toolchain --------|---------- -``3.7`` | ``GCC/11.2.0`` ``3.7`` | ``GCC/11.3.0`` ``3.7`` | ``GCC/12.3.0`` ``3.7`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/b/BLIS.md b/docs/version-specific/supported-software/b/BLIS.md index ee28a92d6f..c2731fa5ba 100644 --- a/docs/version-specific/supported-software/b/BLIS.md +++ b/docs/version-specific/supported-software/b/BLIS.md @@ -8,22 +8,20 @@ BLIS is a portable software framework for instantiating high-performance BLAS-li *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.8.1`` | | ``GCC/11.2.0`` -``0.9.0`` | | ``GCC/11.3.0`` -``0.9.0`` | | ``GCC/12.2.0`` -``0.9.0`` | | ``GCC/12.3.0`` -``0.9.0`` | | ``GCC/13.2.0`` -``0.9.0`` | | ``intel-compilers/2022.1.0`` -``1.0`` | | ``GCC/13.2.0`` -``1.0`` | | ``GCC/13.3.0`` -``1.1`` | | ``GCC/14.2.0`` -``2.0`` | | ``GCC/14.3.0`` -``2.0`` | | ``GCC/15.2.0`` -``2.0`` | | ``llvm-compilers/20.1.8`` -``3.0.1`` | ``-amd`` | ``GCC/11.2.0`` -``3.1`` | ``-amd`` | ``GCCcore/11.2.0`` +version | toolchain +--------|---------- +``0.9.0`` | ``GCC/11.3.0`` +``0.9.0`` | ``GCC/12.2.0`` +``0.9.0`` | ``GCC/12.3.0`` +``0.9.0`` | ``GCC/13.2.0`` +``0.9.0`` | ``intel-compilers/2022.1.0`` +``1.0`` | ``GCC/13.2.0`` +``1.0`` | ``GCC/13.3.0`` +``1.1`` | ``GCC/14.2.0`` +``2.0`` | ``GCC/14.3.0`` +``2.0`` | ``GCC/15.2.0`` +``2.0`` | ``llvm-compilers/20.1.8`` +``2.0`` | ``llvm-compilers/21.1.8`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BRAKER.md b/docs/version-specific/supported-software/b/BRAKER.md index ab71651aa7..4cd4092493 100644 --- a/docs/version-specific/supported-software/b/BRAKER.md +++ b/docs/version-specific/supported-software/b/BRAKER.md @@ -10,7 +10,6 @@ BRAKER is a pipeline for fully automated prediction of protein coding genes with version | toolchain --------|---------- -``2.1.6`` | ``foss/2021b`` ``2.1.6`` | ``foss/2022a`` ``3.0.8`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/b/BUSCO.md b/docs/version-specific/supported-software/b/BUSCO.md index 3d1aeae762..294f92fb1b 100644 --- a/docs/version-specific/supported-software/b/BUSCO.md +++ b/docs/version-specific/supported-software/b/BUSCO.md @@ -10,7 +10,6 @@ BUSCO: assessing genome assembly and annotation completeness with single-copy or version | toolchain --------|---------- -``5.4.3`` | ``foss/2021b`` ``5.4.5`` | ``foss/2022a`` ``5.4.7`` | ``foss/2022b`` ``5.8.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/b/BWA.md b/docs/version-specific/supported-software/b/BWA.md index b6dc3d8621..8a3a2f0d80 100644 --- a/docs/version-specific/supported-software/b/BWA.md +++ b/docs/version-specific/supported-software/b/BWA.md @@ -11,7 +11,6 @@ Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively sh version | toolchain --------|---------- ``0.7.17-20220923`` | ``GCCcore/12.3.0`` -``0.7.17`` | ``GCCcore/11.2.0`` ``0.7.17`` | ``GCCcore/11.3.0`` ``0.7.17`` | ``GCCcore/12.2.0`` ``0.7.17`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/s/slow5tools.md b/docs/version-specific/supported-software/b/BamQuery.md similarity index 74% rename from docs/version-specific/supported-software/s/slow5tools.md rename to docs/version-specific/supported-software/b/BamQuery.md index 875e5cd667..d6cd43b91d 100644 --- a/docs/version-specific/supported-software/s/slow5tools.md +++ b/docs/version-specific/supported-software/b/BamQuery.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# slow5tools +# BamQuery -slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format. +BamQuery provides RNA-seq quantification for a given peptide (from 8 to 11 residues) in chosen RNA-seq samples (single or bulk). -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.4.0`` | ``gompi/2021b`` +``1.0-2023-11-3`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/BamTools.md b/docs/version-specific/supported-software/b/BamTools.md index 07310de8a0..a02f1ecf34 100644 --- a/docs/version-specific/supported-software/b/BamTools.md +++ b/docs/version-specific/supported-software/b/BamTools.md @@ -10,7 +10,6 @@ BamTools provides both a programmer's API and an end-user's toolkit for handling version | toolchain --------|---------- -``2.5.2`` | ``GCC/11.2.0`` ``2.5.2`` | ``GCC/11.3.0`` ``2.5.2`` | ``GCC/12.2.0`` ``2.5.2`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/b/Bambi.md b/docs/version-specific/supported-software/b/Bambi.md deleted file mode 100644 index 36c64da134..0000000000 --- a/docs/version-specific/supported-software/b/Bambi.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Bambi - -Bambi is a high-level Bayesian model-building interface written in Python. It works with the probabilistic programming frameworks PyMC3 and is designed to make it extremely easy to fit Bayesian mixed-effects models common in biology, social sciences and other disciplines. - -*homepage*: - -version | toolchain ---------|---------- -``0.7.1`` | ``foss/2021b`` -``0.7.1`` | ``intel/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/Bandage.md b/docs/version-specific/supported-software/b/Bandage.md index 23d76aa151..1760b53313 100644 --- a/docs/version-specific/supported-software/b/Bandage.md +++ b/docs/version-specific/supported-software/b/Bandage.md @@ -10,7 +10,6 @@ Bandage is a program for visualising de novo assembly graphs version | toolchain --------|---------- -``0.9.0`` | ``GCCcore/11.2.0`` ``0.9.0`` | ``GCCcore/11.3.0`` ``0.9.0`` | ``GCCcore/12.3.0`` ``0.9.0`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/b/Bazel.md b/docs/version-specific/supported-software/b/Bazel.md index 3bd17c3c2e..bd9ceb7270 100644 --- a/docs/version-specific/supported-software/b/Bazel.md +++ b/docs/version-specific/supported-software/b/Bazel.md @@ -10,14 +10,13 @@ Bazel is a build tool that builds code quickly and reliably. It is used to build version | versionsuffix | toolchain --------|---------------|---------- -``3.7.2`` | | ``GCCcore/11.2.0`` -``4.2.2`` | | ``GCCcore/11.2.0`` ``5.1.1`` | | ``GCCcore/11.3.0`` ``6.1.0`` | | ``GCCcore/12.3.0`` ``6.3.1`` | | ``GCCcore/12.2.0`` ``6.3.1`` | | ``GCCcore/12.3.0`` ``6.3.1`` | | ``GCCcore/13.2.0`` ``6.5.0`` | ``-Java-11`` | ``GCCcore/13.3.0`` +``7.4.1`` | ``-Java-21`` | ``GCCcore/12.2.0`` ``7.4.1`` | ``-Java-21`` | ``GCCcore/13.3.0`` ``7.4.1`` | ``-Java-21`` | ``GCCcore/14.2.0`` ``7.7.0`` | ``-Java-21`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/b/BeautifulSoup.md b/docs/version-specific/supported-software/b/BeautifulSoup.md index 12e543b6fa..d62d99013b 100644 --- a/docs/version-specific/supported-software/b/BeautifulSoup.md +++ b/docs/version-specific/supported-software/b/BeautifulSoup.md @@ -10,7 +10,6 @@ Beautiful Soup is a Python library designed for quick turnaround projects like s version | toolchain --------|---------- -``4.10.0`` | ``GCCcore/11.2.0`` ``4.10.0`` | ``GCCcore/11.3.0`` ``4.11.1`` | ``GCCcore/12.2.0`` ``4.12.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/b/BiasAdjustCXX.md b/docs/version-specific/supported-software/b/BiasAdjustCXX.md deleted file mode 100644 index 85bd02a2c0..0000000000 --- a/docs/version-specific/supported-software/b/BiasAdjustCXX.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BiasAdjustCXX - -BiasAdjustCXX command-line tool for the application of fast and efficient bias corrections in climatic research - -*homepage*: - -version | toolchain ---------|---------- -``1.9.1`` | ``gompi/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/BigDFT.md b/docs/version-specific/supported-software/b/BigDFT.md deleted file mode 100644 index 27c1334f62..0000000000 --- a/docs/version-specific/supported-software/b/BigDFT.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# BigDFT - -BigDFT: electronic structure calculation based on Daubechies wavelets. bigdft-suite is a set of different packages to run bigdft. - -*homepage*: - -version | toolchain ---------|---------- -``1.9.1`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/Bio-DB-HTS.md b/docs/version-specific/supported-software/b/Bio-DB-HTS.md index dc67dfc83d..a0b0cca961 100644 --- a/docs/version-specific/supported-software/b/Bio-DB-HTS.md +++ b/docs/version-specific/supported-software/b/Bio-DB-HTS.md @@ -10,7 +10,6 @@ Read files using HTSlib including BAM/CRAM, Tabix and BCF database files version | toolchain --------|---------- -``3.01`` | ``GCC/11.2.0`` ``3.01`` | ``GCC/11.3.0`` ``3.01`` | ``GCC/12.2.0`` ``3.01`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/b/Bio-SearchIO-hmmer.md b/docs/version-specific/supported-software/b/Bio-SearchIO-hmmer.md index 47318b26f9..7374b65ac5 100644 --- a/docs/version-specific/supported-software/b/Bio-SearchIO-hmmer.md +++ b/docs/version-specific/supported-software/b/Bio-SearchIO-hmmer.md @@ -10,7 +10,6 @@ Code to parse output from hmmsearch, hmmscan, phmmer and nhmmer, compatible with version | toolchain --------|---------- -``1.7.3`` | ``GCC/11.2.0`` ``1.7.3`` | ``GCC/11.3.0`` ``1.7.3`` | ``GCC/12.2.0`` ``1.7.3`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/b/BioPerl.md b/docs/version-specific/supported-software/b/BioPerl.md index 3b66f64aba..ccfa2d8865 100644 --- a/docs/version-specific/supported-software/b/BioPerl.md +++ b/docs/version-specific/supported-software/b/BioPerl.md @@ -10,7 +10,6 @@ Bioperl is the product of a community effort to produce Perl code which is usefu version | toolchain --------|---------- -``1.7.8`` | ``GCCcore/11.2.0`` ``1.7.8`` | ``GCCcore/11.3.0`` ``1.7.8`` | ``GCCcore/12.2.0`` ``1.7.8`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/b/Biopython.md b/docs/version-specific/supported-software/b/Biopython.md index 9e710b4cc6..c772b72e5b 100644 --- a/docs/version-specific/supported-software/b/Biopython.md +++ b/docs/version-specific/supported-software/b/Biopython.md @@ -10,11 +10,8 @@ Biopython is a set of freely available tools for biological computation written version | versionsuffix | toolchain --------|---------------|---------- -``1.76`` | ``-Python-2.7.18`` | ``foss/2021b`` ``1.76`` | ``-Python-2.7.18`` | ``foss/2023a`` -``1.79`` | | ``foss/2021b`` ``1.79`` | | ``foss/2022a`` -``1.79`` | | ``intel/2021b`` ``1.81`` | | ``gfbf/2022b`` ``1.83`` | | ``gfbf/2023a`` ``1.84`` | | ``gfbf/2023b`` diff --git a/docs/version-specific/supported-software/b/Bismark.md b/docs/version-specific/supported-software/b/Bismark.md index d438b9dbee..e5a2f17bd9 100644 --- a/docs/version-specific/supported-software/b/Bismark.md +++ b/docs/version-specific/supported-software/b/Bismark.md @@ -10,7 +10,6 @@ A tool to map bisulfite converted sequence reads and determine cytosine methylat version | toolchain --------|---------- -``0.23.1`` | ``foss/2021b`` ``0.24.0`` | ``GCC/11.3.0`` ``0.24.1`` | ``GCC/12.2.0`` ``0.24.2`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/b/Bison.md b/docs/version-specific/supported-software/b/Bison.md index fc70cb6147..915c79d91e 100644 --- a/docs/version-specific/supported-software/b/Bison.md +++ b/docs/version-specific/supported-software/b/Bison.md @@ -11,8 +11,6 @@ Bison is a general-purpose parser generator that converts an annotated context- version | toolchain --------|---------- ``3.3.2`` | ``system`` -``3.7.6`` | ``GCCcore/11.2.0`` -``3.7.6`` | ``system`` ``3.8.2`` | ``GCCcore/11.3.0`` ``3.8.2`` | ``GCCcore/11.4.0`` ``3.8.2`` | ``GCCcore/12.1.0`` diff --git a/docs/version-specific/supported-software/b/Blitz++.md b/docs/version-specific/supported-software/b/Blitz++.md index 3b94a79276..6fbc53b162 100644 --- a/docs/version-specific/supported-software/b/Blitz++.md +++ b/docs/version-specific/supported-software/b/Blitz++.md @@ -14,6 +14,7 @@ version | toolchain ``1.0.2`` | ``GCCcore/12.2.0`` ``1.0.2`` | ``GCCcore/12.3.0`` ``1.0.2`` | ``GCCcore/13.2.0`` +``1.0.2`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Blosc.md b/docs/version-specific/supported-software/b/Blosc.md index f880361404..121df8e710 100644 --- a/docs/version-specific/supported-software/b/Blosc.md +++ b/docs/version-specific/supported-software/b/Blosc.md @@ -10,7 +10,6 @@ Blosc, an extremely fast, multi-threaded, meta-compressor library version | toolchain --------|---------- -``1.21.1`` | ``GCCcore/11.2.0`` ``1.21.3`` | ``GCCcore/11.3.0`` ``1.21.3`` | ``GCCcore/12.2.0`` ``1.21.5`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/b/Blosc2.md b/docs/version-specific/supported-software/b/Blosc2.md index 97bce806aa..b7d195aa75 100644 --- a/docs/version-specific/supported-software/b/Blosc2.md +++ b/docs/version-specific/supported-software/b/Blosc2.md @@ -14,7 +14,6 @@ version | toolchain ``2.17.0`` | ``GCCcore/13.3.0`` ``2.19.0`` | ``GCCcore/14.2.0`` ``2.19.0`` | ``GCCcore/14.3.0`` -``2.4.3`` | ``GCCcore/11.2.0`` ``2.4.3`` | ``GCCcore/11.3.0`` ``2.6.1`` | ``GCCcore/11.3.0`` ``2.8.0`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/b/Boost.MPI.md b/docs/version-specific/supported-software/b/Boost.MPI.md index c2178a73dc..e662b4b09c 100644 --- a/docs/version-specific/supported-software/b/Boost.MPI.md +++ b/docs/version-specific/supported-software/b/Boost.MPI.md @@ -10,7 +10,6 @@ Boost provides free peer-reviewed portable C++ source libraries. version | toolchain --------|---------- -``1.77.0`` | ``gompi/2021b`` ``1.79.0`` | ``gompi/2022a`` ``1.79.0`` | ``gompi/2022b`` ``1.81.0`` | ``gompi/2022b`` diff --git a/docs/version-specific/supported-software/b/Boost.Python.md b/docs/version-specific/supported-software/b/Boost.Python.md index 32c41bc52f..37131a4341 100644 --- a/docs/version-specific/supported-software/b/Boost.Python.md +++ b/docs/version-specific/supported-software/b/Boost.Python.md @@ -10,7 +10,6 @@ Boost.Python is a C++ library which enables seamless interoperability between C+ version | toolchain --------|---------- -``1.77.0`` | ``GCC/11.2.0`` ``1.79.0`` | ``GCC/11.3.0`` ``1.82.0`` | ``GCC/12.3.0`` ``1.83.0`` | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/b/Boost.md b/docs/version-specific/supported-software/b/Boost.md index 22bd6b43f5..498da7ff9a 100644 --- a/docs/version-specific/supported-software/b/Boost.md +++ b/docs/version-specific/supported-software/b/Boost.md @@ -10,14 +10,9 @@ Boost provides free peer-reviewed portable C++ source libraries. version | toolchain --------|---------- -``1.55.0`` | ``GCC/11.2.0`` ``1.55.0`` | ``GCC/12.3.0`` ``1.74.0`` | ``GCC/12.3.0`` -``1.75.0`` | ``GCC/11.2.0`` ``1.75.0`` | ``GCC/12.3.0`` -``1.77.0`` | ``GCC/11.2.0`` -``1.77.0`` | ``intel-compilers/2021.4.0`` -``1.79.0`` | ``GCC/11.2.0`` ``1.79.0`` | ``GCC/11.3.0`` ``1.81.0`` | ``GCC/12.2.0`` ``1.81.0`` | ``intel-compilers/2022.2.1`` diff --git a/docs/version-specific/supported-software/b/Bowtie.md b/docs/version-specific/supported-software/b/Bowtie.md index de82be81dd..9e4fc5cac3 100644 --- a/docs/version-specific/supported-software/b/Bowtie.md +++ b/docs/version-specific/supported-software/b/Bowtie.md @@ -10,7 +10,6 @@ Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DN version | toolchain --------|---------- -``1.3.1`` | ``GCC/11.2.0`` ``1.3.1`` | ``GCC/11.3.0`` ``1.3.1`` | ``GCC/12.2.0`` ``1.3.1`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/b/Bowtie2.md b/docs/version-specific/supported-software/b/Bowtie2.md index f878bec6c0..863ef273fb 100644 --- a/docs/version-specific/supported-software/b/Bowtie2.md +++ b/docs/version-specific/supported-software/b/Bowtie2.md @@ -10,7 +10,6 @@ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads version | versionsuffix | toolchain --------|---------------|---------- -``2.4.4`` | | ``GCC/11.2.0`` ``2.4.5`` | | ``GCC/11.3.0`` ``2.5.1`` | | ``GCC/12.2.0`` ``2.5.1`` | | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/b/Bracken.md b/docs/version-specific/supported-software/b/Bracken.md index e82b4067e0..70c15d0dac 100644 --- a/docs/version-specific/supported-software/b/Bracken.md +++ b/docs/version-specific/supported-software/b/Bracken.md @@ -10,8 +10,6 @@ Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate st version | toolchain --------|---------- -``2.6.2`` | ``GCCcore/11.2.0`` -``2.7`` | ``GCCcore/11.2.0`` ``2.9`` | ``GCCcore/12.3.0`` ``3.1`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/b/Braindecode.md b/docs/version-specific/supported-software/b/Braindecode.md index 627045c55c..f545a84d65 100644 --- a/docs/version-specific/supported-software/b/Braindecode.md +++ b/docs/version-specific/supported-software/b/Braindecode.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.8.1`` | ``-PyTorch-2.1.2-CUDA-12.1.1`` | ``foss/2023a`` ``0.8.1`` | ``-PyTorch-2.1.2`` | ``foss/2023a`` +``1.2.0`` | | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/Brotli.md b/docs/version-specific/supported-software/b/Brotli.md index c7a1f8ade1..dc15491544 100644 --- a/docs/version-specific/supported-software/b/Brotli.md +++ b/docs/version-specific/supported-software/b/Brotli.md @@ -10,7 +10,6 @@ Brotli is a generic-purpose lossless compression algorithm that compresses data version | toolchain --------|---------- -``1.0.9`` | ``GCCcore/11.2.0`` ``1.0.9`` | ``GCCcore/11.3.0`` ``1.0.9`` | ``GCCcore/12.2.0`` ``1.0.9`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/b/bam-readcount.md b/docs/version-specific/supported-software/b/bam-readcount.md index e36f5a1c6c..a1e6a2548e 100644 --- a/docs/version-specific/supported-software/b/bam-readcount.md +++ b/docs/version-specific/supported-software/b/bam-readcount.md @@ -10,7 +10,6 @@ Count DNA sequence reads in BAM files version | toolchain --------|---------- -``0.8.0`` | ``GCC/11.2.0`` ``1.0.1`` | ``GCC/12.2.0`` ``1.0.1`` | ``GCC/12.3.0`` ``1.0.1`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/b/barrnap.md b/docs/version-specific/supported-software/b/barrnap.md index a87850aa57..ef855daf1d 100644 --- a/docs/version-specific/supported-software/b/barrnap.md +++ b/docs/version-specific/supported-software/b/barrnap.md @@ -10,7 +10,6 @@ Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal version | toolchain --------|---------- -``0.9`` | ``gompi/2021b`` ``0.9`` | ``gompi/2022a`` ``0.9`` | ``gompi/2025a`` diff --git a/docs/version-specific/supported-software/b/bcl2fastq2.md b/docs/version-specific/supported-software/b/bcl2fastq2.md index 18184c8219..a3804db0bc 100644 --- a/docs/version-specific/supported-software/b/bcl2fastq2.md +++ b/docs/version-specific/supported-software/b/bcl2fastq2.md @@ -10,10 +10,10 @@ bcl2fastq Conversion Software both demultiplexes data and converts BCL files gen version | toolchain --------|---------- -``2.20.0`` | ``GCC/11.2.0`` ``2.20.0`` | ``GCC/11.3.0`` ``2.20.0`` | ``GCC/12.2.0`` ``2.20.0`` | ``GCC/13.2.0`` +``2.20.0`` | ``GCC/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/bin2cell.md b/docs/version-specific/supported-software/b/bin2cell.md index b4b7a8d025..982bd777dd 100644 --- a/docs/version-specific/supported-software/b/bin2cell.md +++ b/docs/version-specific/supported-software/b/bin2cell.md @@ -11,6 +11,7 @@ Bin2cell proposes 2um bin to cell groupings based on segmentation, which can be version | toolchain --------|---------- ``0.3.2`` | ``foss/2023a`` +``0.3.4`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/binutils.md b/docs/version-specific/supported-software/b/binutils.md index e25d8fbd6c..3921e1ab6c 100644 --- a/docs/version-specific/supported-software/b/binutils.md +++ b/docs/version-specific/supported-software/b/binutils.md @@ -12,8 +12,6 @@ version | toolchain --------|---------- ``2.32`` | ``system`` ``2.35`` | ``system`` -``2.36.1`` | ``system`` -``2.37`` | ``GCCcore/11.2.0`` ``2.37`` | ``system`` ``2.38`` | ``GCCcore/11.3.0`` ``2.38`` | ``GCCcore/12.1.0`` diff --git a/docs/version-specific/supported-software/b/bioawk.md b/docs/version-specific/supported-software/b/bioawk.md deleted file mode 100644 index 1393a0e8f0..0000000000 --- a/docs/version-specific/supported-software/b/bioawk.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# bioawk - -Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names. - -*homepage*: - -version | toolchain ---------|---------- -``1.0`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/b/biom-format.md b/docs/version-specific/supported-software/b/biom-format.md index b72d138d4d..06aba8bea0 100644 --- a/docs/version-specific/supported-software/b/biom-format.md +++ b/docs/version-specific/supported-software/b/biom-format.md @@ -10,7 +10,6 @@ The BIOM file format (canonically pronounced biome) is designed to be a general version | toolchain --------|---------- -``2.1.12`` | ``foss/2021b`` ``2.1.14`` | ``foss/2022a`` ``2.1.15`` | ``foss/2022b`` ``2.1.15`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/b/bokeh.md b/docs/version-specific/supported-software/b/bokeh.md index cecd7889c0..f664fc47cb 100644 --- a/docs/version-specific/supported-software/b/bokeh.md +++ b/docs/version-specific/supported-software/b/bokeh.md @@ -10,7 +10,6 @@ Statistical and novel interactive HTML plots for Python version | toolchain --------|---------- -``2.4.2`` | ``foss/2021b`` ``2.4.3`` | ``foss/2022a`` ``3.2.1`` | ``foss/2022b`` ``3.2.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/b/boto3.md b/docs/version-specific/supported-software/b/boto3.md index add12a9a77..f4396d9ee9 100644 --- a/docs/version-specific/supported-software/b/boto3.md +++ b/docs/version-specific/supported-software/b/boto3.md @@ -10,7 +10,6 @@ Boto3 is the Amazon Web Services (AWS) Software Development Kit (SDK) for Python version | toolchain --------|---------- -``1.20.13`` | ``GCCcore/11.2.0`` ``1.26.163`` | ``GCCcore/12.2.0`` ``1.26.37`` | ``GCCcore/11.3.0`` ``1.28.70`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/b/breseq.md b/docs/version-specific/supported-software/b/breseq.md index 92aedc3cba..859b730eb8 100644 --- a/docs/version-specific/supported-software/b/breseq.md +++ b/docs/version-specific/supported-software/b/breseq.md @@ -10,7 +10,6 @@ breseq is a computational pipeline for the analysis of short-read re-sequencing version | toolchain --------|---------- -``0.36.1`` | ``foss/2021b`` ``0.38.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/b/btllib.md b/docs/version-specific/supported-software/b/btllib.md index 88b8c610d6..1ca0014525 100644 --- a/docs/version-specific/supported-software/b/btllib.md +++ b/docs/version-specific/supported-software/b/btllib.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.7.0`` | ``GCC/12.3.0`` ``1.7.5`` | ``GCC/13.3.0`` +``1.7.5`` | ``GCC/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/b/buildenv.md b/docs/version-specific/supported-software/b/buildenv.md index a2afb92519..addb048aa2 100644 --- a/docs/version-specific/supported-software/b/buildenv.md +++ b/docs/version-specific/supported-software/b/buildenv.md @@ -10,8 +10,6 @@ This module sets a group of environment variables for compilers, linkers, maths version | versionsuffix | toolchain --------|---------------|---------- -``default`` | ``-CUDA-11.4.1`` | ``foss/2021b`` -``default`` | | ``foss/2021b`` ``default`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``default`` | | ``foss/2022a`` ``default`` | ``-CUDA-12.0.0`` | ``foss/2022b`` @@ -26,7 +24,6 @@ version | versionsuffix | toolchain ``default`` | | ``foss/2025a`` ``default`` | ``-CUDA-12.9.1`` | ``foss/2025b`` ``default`` | | ``foss/2025b`` -``default`` | | ``intel/2021b`` ``default`` | | ``intel/2022a`` ``default`` | | ``intel/2022b`` ``default`` | | ``intel/2023a`` @@ -34,6 +31,7 @@ version | versionsuffix | toolchain ``default`` | | ``intel/2024a`` ``default`` | | ``intel/2025a`` ``default`` | | ``intel/2025b`` +``default`` | | ``lfoss/2025b`` ``default`` | | ``nvompi/2022.07`` diff --git a/docs/version-specific/supported-software/b/bwa-mem2.md b/docs/version-specific/supported-software/b/bwa-mem2.md index ae71046512..2e6894949a 100644 --- a/docs/version-specific/supported-software/b/bwa-mem2.md +++ b/docs/version-specific/supported-software/b/bwa-mem2.md @@ -10,7 +10,6 @@ The tool bwa-mem2 is the next version of the bwa-mem algorithm in bwa. It produc version | toolchain --------|---------- -``2.2.1`` | ``GCC/11.2.0`` ``2.2.1`` | ``GCC/13.3.0`` ``2.2.1`` | ``GCCcore/12.3.0`` ``2.2.1`` | ``intel-compilers/2023.1.0`` diff --git a/docs/version-specific/supported-software/b/bwidget.md b/docs/version-specific/supported-software/b/bwidget.md index c57fd6e099..8797c9415f 100644 --- a/docs/version-specific/supported-software/b/bwidget.md +++ b/docs/version-specific/supported-software/b/bwidget.md @@ -11,7 +11,6 @@ The BWidget Toolkit is a high-level Widget Set for Tcl/Tk built using native Tcl version | toolchain --------|---------- ``1.10.1`` | ``GCCcore/13.3.0`` -``1.9.15`` | ``GCCcore/11.2.0`` ``1.9.15`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/b/bx-python.md b/docs/version-specific/supported-software/b/bx-python.md index 152d76f077..fc97576abd 100644 --- a/docs/version-specific/supported-software/b/bx-python.md +++ b/docs/version-specific/supported-software/b/bx-python.md @@ -14,7 +14,7 @@ version | toolchain ``0.10.0`` | ``gfbf/2023a`` ``0.13.0`` | ``foss/2023b`` ``0.13.0`` | ``gfbf/2024a`` -``0.8.13`` | ``foss/2021b`` +``0.14.0`` | ``gfbf/2025b`` ``0.9.0`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/b/bzip2.md b/docs/version-specific/supported-software/b/bzip2.md index c02957f5ae..de4b0f3ef1 100644 --- a/docs/version-specific/supported-software/b/bzip2.md +++ b/docs/version-specific/supported-software/b/bzip2.md @@ -10,7 +10,6 @@ bzip2 is a freely available, patent free, high-quality data compressor. It typi version | toolchain --------|---------- -``1.0.8`` | ``GCCcore/11.2.0`` ``1.0.8`` | ``GCCcore/11.3.0`` ``1.0.8`` | ``GCCcore/12.2.0`` ``1.0.8`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/b/index.md b/docs/version-specific/supported-software/b/index.md index 25172b87a5..5f07569d4b 100644 --- a/docs/version-specific/supported-software/b/index.md +++ b/docs/version-specific/supported-software/b/index.md @@ -9,16 +9,14 @@ search: * [BA3-SNPS-autotune](BA3-SNPS-autotune.md) - * [BabelStream](BabelStream.md) * [bacio](bacio.md) - * [Bader](Bader.md) * [BAGEL](BAGEL.md) * [bakta](bakta.md) * [BAli-Phy](BAli-Phy.md) * [bam-readcount](bam-readcount.md) - * [Bambi](Bambi.md) * [bamFilters](bamFilters.md) * [BAMM](BAMM.md) + * [BamQuery](BamQuery.md) * [bamtofastq](bamtofastq.md) * [BamTools](BamTools.md) * [Bandage](Bandage.md) @@ -55,9 +53,7 @@ search: * [BgeeCall](BgeeCall.md) * [BgeeDB](BgeeDB.md) * [BGEN-enkre](BGEN-enkre.md) - * [BiasAdjustCXX](BiasAdjustCXX.md) * [BiG-SCAPE](BiG-SCAPE.md) - * [BigDFT](BigDFT.md) * [BigStitcher-Spark](BigStitcher-Spark.md) * [bin2cell](bin2cell.md) * [BindCraft](BindCraft.md) @@ -65,7 +61,6 @@ search: * [Bio-DB-HTS](Bio-DB-HTS.md) * [Bio-FeatureIO](Bio-FeatureIO.md) * [Bio-SearchIO-hmmer](Bio-SearchIO-hmmer.md) - * [bioawk](bioawk.md) * [biobakery-workflows](biobakery-workflows.md) * [biobambam2](biobambam2.md) * [biogeme](biogeme.md) @@ -90,7 +85,6 @@ search: * [Block](Block.md) * [Blosc](Blosc.md) * [Blosc2](Blosc2.md) - * [BLT](BLT.md) * [bmtagger](bmtagger.md) * [bokeh](bokeh.md) * [BOLT-LMM](BOLT-LMM.md) diff --git a/docs/version-specific/supported-software/c/CD-HIT.md b/docs/version-specific/supported-software/c/CD-HIT.md index a91171ea85..67326f7cd1 100644 --- a/docs/version-specific/supported-software/c/CD-HIT.md +++ b/docs/version-specific/supported-software/c/CD-HIT.md @@ -6,17 +6,17 @@ search: CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences. -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.8.1`` | ``GCC/11.2.0`` ``4.8.1`` | ``GCC/11.3.0`` ``4.8.1`` | ``GCC/12.2.0`` ``4.8.1`` | ``GCC/12.3.0`` ``4.8.1`` | ``GCC/13.2.0`` ``4.8.1`` | ``GCC/13.3.0`` ``4.8.1`` | ``GCC/14.2.0`` +``4.8.1`` | ``GCC/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CDO.md b/docs/version-specific/supported-software/c/CDO.md index 1b47ee490f..45bd9b26d6 100644 --- a/docs/version-specific/supported-software/c/CDO.md +++ b/docs/version-specific/supported-software/c/CDO.md @@ -10,8 +10,6 @@ CDO is a collection of command line Operators to manipulate and analyse Climate version | toolchain --------|---------- -``1.9.10`` | ``iimpi/2021b`` -``2.0.5`` | ``gompi/2021b`` ``2.0.6`` | ``gompi/2022a`` ``2.2.2`` | ``gompi/2023a`` ``2.2.2`` | ``gompi/2023b`` @@ -19,6 +17,7 @@ version | toolchain ``2.4.4`` | ``gompi/2024a`` ``2.5.2`` | ``gompi/2025a`` ``2.5.3`` | ``gompi/2025b`` +``2.5.3`` | ``lompi/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CESM-deps.md b/docs/version-specific/supported-software/c/CESM-deps.md index 92ca9c0ef8..4d11e6ffbb 100644 --- a/docs/version-specific/supported-software/c/CESM-deps.md +++ b/docs/version-specific/supported-software/c/CESM-deps.md @@ -10,7 +10,6 @@ CESM is a fully-coupled, community, global climate model that provides state-of- version | toolchain --------|---------- -``2`` | ``foss/2021b`` ``2`` | ``foss/2022a`` ``2`` | ``foss/2023a`` ``2`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/c/CFITSIO.md b/docs/version-specific/supported-software/c/CFITSIO.md index 016341f337..23cf91da1b 100644 --- a/docs/version-specific/supported-software/c/CFITSIO.md +++ b/docs/version-specific/supported-software/c/CFITSIO.md @@ -10,7 +10,6 @@ CFITSIO is a library of C and Fortran subroutines for reading and writing data f version | toolchain --------|---------- -``3.49`` | ``GCCcore/11.2.0`` ``4.2.0`` | ``GCCcore/11.3.0`` ``4.2.0`` | ``GCCcore/12.2.0`` ``4.3.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/c/CGAL.md b/docs/version-specific/supported-software/c/CGAL.md index 6c276a1a1a..f47bc76997 100644 --- a/docs/version-specific/supported-software/c/CGAL.md +++ b/docs/version-specific/supported-software/c/CGAL.md @@ -10,7 +10,6 @@ The goal of the CGAL Open Source Project is to provide easy access to efficient version | toolchain --------|---------- -``4.14.3`` | ``gompi/2021b`` ``4.14.3`` | ``gompi/2022a`` ``5.4`` | ``GCCcore/12.3.0`` ``5.5.2`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/c/CLHEP.md b/docs/version-specific/supported-software/c/CLHEP.md index 3ecf0f4918..459c71570b 100644 --- a/docs/version-specific/supported-software/c/CLHEP.md +++ b/docs/version-specific/supported-software/c/CLHEP.md @@ -10,8 +10,6 @@ The CLHEP project is intended to be a set of HEP-specific foundation and utilit version | toolchain --------|---------- -``2.4.4.0`` | ``GCC/11.2.0`` -``2.4.5.1`` | ``GCC/11.2.0`` ``2.4.5.3`` | ``GCC/11.3.0`` ``2.4.6.2`` | ``GCC/11.3.0`` ``2.4.6.4`` | ``GCC/12.2.0`` diff --git a/docs/version-specific/supported-software/c/CMAverse.md b/docs/version-specific/supported-software/c/CMAverse.md deleted file mode 100644 index e5d1ed0bf2..0000000000 --- a/docs/version-specific/supported-software/c/CMAverse.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CMAverse - -The R package CMAverse provides a suite of functions for reproducible causal mediation analysis including cmdag for DAG visualization, cmest for statistical modeling and cmsens for sensitivity analysis. - -*homepage*: - -version | toolchain ---------|---------- -``20220112`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CMake.md b/docs/version-specific/supported-software/c/CMake.md index 7114c782b6..6297656209 100644 --- a/docs/version-specific/supported-software/c/CMake.md +++ b/docs/version-specific/supported-software/c/CMake.md @@ -11,8 +11,6 @@ CMake, the cross-platform, open-source build system. CMake is a family of tool version | toolchain --------|---------- ``3.18.4`` | ``system`` -``3.21.1`` | ``GCCcore/11.2.0`` -``3.22.1`` | ``GCCcore/11.2.0`` ``3.23.1`` | ``GCCcore/11.3.0`` ``3.24.3`` | ``GCCcore/11.3.0`` ``3.24.3`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/c/COBRApy.md b/docs/version-specific/supported-software/c/COBRApy.md index 292043c52a..41184a85bb 100644 --- a/docs/version-specific/supported-software/c/COBRApy.md +++ b/docs/version-specific/supported-software/c/COBRApy.md @@ -11,6 +11,7 @@ COBRApy is a package for constraint-based modeling of metabolic networks. version | toolchain --------|---------- ``0.29.0`` | ``foss/2023b`` +``0.30.0`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/COLMAP.md b/docs/version-specific/supported-software/c/COLMAP.md index 6cef7bf298..0e542791dc 100644 --- a/docs/version-specific/supported-software/c/COLMAP.md +++ b/docs/version-specific/supported-software/c/COLMAP.md @@ -10,6 +10,8 @@ COLMAP is a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (M version | toolchain --------|---------- +``3.12.6`` | ``foss/2024a`` +``3.13.0`` | ``foss/2025b`` ``3.8`` | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/c/CONCORD.md b/docs/version-specific/supported-software/c/CONCORD.md index 85f6752199..d40e4a252b 100644 --- a/docs/version-specific/supported-software/c/CONCORD.md +++ b/docs/version-specific/supported-software/c/CONCORD.md @@ -12,6 +12,8 @@ version | versionsuffix | toolchain --------|---------------|---------- ``1.0.13`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``1.0.13`` | | ``foss/2023a`` +``1.0.13`` | ``-CUDA-12.6.0`` | ``foss/2024a`` +``1.0.13`` | | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CPLEX.md b/docs/version-specific/supported-software/c/CPLEX.md index f04f650fc7..04c685f76c 100644 --- a/docs/version-specific/supported-software/c/CPLEX.md +++ b/docs/version-specific/supported-software/c/CPLEX.md @@ -10,8 +10,8 @@ IBM ILOG CPLEX Optimizer's mathematical programming technology enables analytic version | toolchain --------|---------- -``22.1.1`` | ``GCCcore/11.2.0`` ``22.1.1`` | ``system`` +``22.1.2`` | ``GCCcore/12.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CSBDeep.md b/docs/version-specific/supported-software/c/CSBDeep.md index be5720665d..e31eaea30c 100644 --- a/docs/version-specific/supported-software/c/CSBDeep.md +++ b/docs/version-specific/supported-software/c/CSBDeep.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``0.7.4`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.7.4`` | | ``foss/2022a`` ``0.7.4`` | | ``foss/2023a`` +``0.8.2`` | | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CUDA.md b/docs/version-specific/supported-software/c/CUDA.md index ffc55ee74c..2f9380e9e2 100644 --- a/docs/version-specific/supported-software/c/CUDA.md +++ b/docs/version-specific/supported-software/c/CUDA.md @@ -36,6 +36,8 @@ version | toolchain ``13.0.1`` | ``system`` ``13.0.2`` | ``system`` ``13.1.0`` | ``system`` +``13.1.1`` | ``system`` +``13.2.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CUDAcore.md b/docs/version-specific/supported-software/c/CUDAcore.md index 3bfe068f30..7689aa0d16 100644 --- a/docs/version-specific/supported-software/c/CUDAcore.md +++ b/docs/version-specific/supported-software/c/CUDAcore.md @@ -10,9 +10,6 @@ CUDA (formerly Compute Unified Device Architecture) is a parallel computing pla version | toolchain --------|---------- -``11.1.1`` | ``system`` -``11.2.1`` | ``system`` -``11.2.2`` | ``system`` ``11.3.0`` | ``system`` ``11.4.0`` | ``system`` ``11.5.1`` | ``system`` diff --git a/docs/version-specific/supported-software/c/CUTLASS.md b/docs/version-specific/supported-software/c/CUTLASS.md index 33bd4efd5a..ffb138ab95 100644 --- a/docs/version-specific/supported-software/c/CUTLASS.md +++ b/docs/version-specific/supported-software/c/CUTLASS.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``2.11.0`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``3.4.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``4.1.0`` | ``-CUDA-12.6.0`` | ``foss/2024a`` +``4.3.5`` | ``-CUDA-12.8.0`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CUnit.md b/docs/version-specific/supported-software/c/CUnit.md index b9b0e7fafa..729f068a39 100644 --- a/docs/version-specific/supported-software/c/CUnit.md +++ b/docs/version-specific/supported-software/c/CUnit.md @@ -10,7 +10,6 @@ Automated testing framework for C. version | toolchain --------|---------- -``2.1-3`` | ``GCCcore/11.2.0`` ``2.1-3`` | ``GCCcore/11.3.0`` ``2.1-3`` | ``GCCcore/12.3.0`` ``2.1-3`` | ``GCCcore/14.2.0`` diff --git a/docs/version-specific/supported-software/c/CVXOPT.md b/docs/version-specific/supported-software/c/CVXOPT.md index 833c70f051..d6e2c570ea 100644 --- a/docs/version-specific/supported-software/c/CVXOPT.md +++ b/docs/version-specific/supported-software/c/CVXOPT.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.3.1`` | ``foss/2022a`` ``1.3.2`` | ``foss/2023a`` +``1.3.2`` | ``foss/2025a`` ``1.3.2`` | ``gfbf/2025b`` diff --git a/docs/version-specific/supported-software/c/CVXPY.md b/docs/version-specific/supported-software/c/CVXPY.md index 1dab4abcf6..4992441dd2 100644 --- a/docs/version-specific/supported-software/c/CVXPY.md +++ b/docs/version-specific/supported-software/c/CVXPY.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.3.0`` | ``foss/2022a`` ``1.4.2`` | ``foss/2023a`` +``1.5.1`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CaDiCaL.md b/docs/version-specific/supported-software/c/CaDiCaL.md new file mode 100644 index 0000000000..e960ac8201 --- /dev/null +++ b/docs/version-specific/supported-software/c/CaDiCaL.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# CaDiCaL + +CaDiCaL is a simplified satisfiability solver. The original goal of the development of CaDiCaL was to obtain a CDCL solver, which is easy to understand and change, while at the same time not being much slower than other state-of-the-art CDCL solvers. + +*homepage*: + +version | toolchain +--------|---------- +``2.1.3`` | ``GCC/14.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/Cantera.md b/docs/version-specific/supported-software/c/Cantera.md index 7a63beb0fe..485f1def7f 100644 --- a/docs/version-specific/supported-software/c/Cantera.md +++ b/docs/version-specific/supported-software/c/Cantera.md @@ -13,6 +13,7 @@ version | toolchain ``2.6.0`` | ``foss/2022a`` ``3.0.0`` | ``foss/2023a`` ``3.1.0-20250816`` | ``foss/2024a`` +``3.2.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CapnProto.md b/docs/version-specific/supported-software/c/CapnProto.md index 44bbfa866f..8188565536 100644 --- a/docs/version-specific/supported-software/c/CapnProto.md +++ b/docs/version-specific/supported-software/c/CapnProto.md @@ -12,10 +12,10 @@ version | toolchain --------|---------- ``0.10.2`` | ``GCCcore/11.3.0`` ``0.10.3`` | ``GCCcore/12.2.0`` -``0.9.1`` | ``GCCcore/11.2.0`` ``1.0.1`` | ``GCCcore/12.3.0`` ``1.0.1.1`` | ``GCCcore/13.2.0`` ``1.1.0`` | ``GCCcore/13.3.0`` +``1.4.0`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Cartopy.md b/docs/version-specific/supported-software/c/Cartopy.md index 27e7fd9e4a..588ac8ee37 100644 --- a/docs/version-specific/supported-software/c/Cartopy.md +++ b/docs/version-specific/supported-software/c/Cartopy.md @@ -10,7 +10,6 @@ Cartopy is a Python package designed to make drawing maps for data analysis and version | toolchain --------|---------- -``0.20.3`` | ``foss/2021b`` ``0.20.3`` | ``foss/2022a`` ``0.22.0`` | ``foss/2023a`` ``0.22.0`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/b/BabelStream.md b/docs/version-specific/supported-software/c/CasADi.md similarity index 76% rename from docs/version-specific/supported-software/b/BabelStream.md rename to docs/version-specific/supported-software/c/CasADi.md index 78034f8c79..f77f20f7f2 100644 --- a/docs/version-specific/supported-software/b/BabelStream.md +++ b/docs/version-specific/supported-software/c/CasADi.md @@ -2,15 +2,16 @@ search: boost: 0.5 --- -# BabelStream +# CasADi -STREAM, for lots of devices written in many programming models +CasADi is an open-source tool for nonlinear optimization and algorithmic differentiation. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``3.4`` | ``-omp`` | ``GCC/11.2.0`` +``3.7.0`` | ``-MATLAB-2024a-r7`` | ``foss/2024a`` +``3.7.0`` | | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Cassiopeia.md b/docs/version-specific/supported-software/c/Cassiopeia.md index c1c334cca4..30c628994c 100644 --- a/docs/version-specific/supported-software/c/Cassiopeia.md +++ b/docs/version-specific/supported-software/c/Cassiopeia.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2.0.0`` | ``foss/2023a`` ``2.0.0`` | ``foss/2023b`` +``2.1.0-2025-10-9`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CellRanger-ARC.md b/docs/version-specific/supported-software/c/CellRanger-ARC.md index 07ca7986a5..79627f5ace 100644 --- a/docs/version-specific/supported-software/c/CellRanger-ARC.md +++ b/docs/version-specific/supported-software/c/CellRanger-ARC.md @@ -10,7 +10,6 @@ Cell Ranger ARC is a set of analysis pipelines that process Chromium Single Cel version | toolchain --------|---------- -``1.0.1`` | ``system`` ``2.0.0`` | ``system`` ``2.0.1`` | ``system`` ``2.0.2`` | ``system`` diff --git a/docs/version-specific/supported-software/c/CellRanger.md b/docs/version-specific/supported-software/c/CellRanger.md index 3abfdeb6cd..8790c4d5c2 100644 --- a/docs/version-specific/supported-software/c/CellRanger.md +++ b/docs/version-specific/supported-software/c/CellRanger.md @@ -11,8 +11,6 @@ Cell Ranger is a set of analysis pipelines that process Chromium single-cell RN version | toolchain --------|---------- ``10.0.0`` | ``system`` -``5.0.1`` | ``system`` -``6.0.0`` | ``system`` ``6.0.1`` | ``system`` ``6.0.2`` | ``system`` ``6.1.2`` | ``system`` diff --git a/docs/version-specific/supported-software/c/CellRank.md b/docs/version-specific/supported-software/c/CellRank.md index 714cdf7dae..41210162ce 100644 --- a/docs/version-specific/supported-software/c/CellRank.md +++ b/docs/version-specific/supported-software/c/CellRank.md @@ -8,11 +8,11 @@ CellRank is a toolkit to uncover cellular dynamics based on Markov state modeli *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.0.2`` | | ``foss/2022a`` -``2.0.2`` | ``-CUDA-12.1.1`` | ``foss/2023a`` -``2.0.2`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``2.0.2`` | ``foss/2022a`` +``2.0.2`` | ``foss/2023a`` +``2.0.7`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CellTypist.md b/docs/version-specific/supported-software/c/CellTypist.md index 5297b67aef..4e751a0e5e 100644 --- a/docs/version-specific/supported-software/c/CellTypist.md +++ b/docs/version-specific/supported-software/c/CellTypist.md @@ -10,8 +10,8 @@ A tool for semi-automatic cell type annotation version | toolchain --------|---------- -``1.0.0`` | ``foss/2021b`` ``1.6.2`` | ``foss/2023a`` +``1.7.1`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CheMPS2.md b/docs/version-specific/supported-software/c/CheMPS2.md index 5a93519348..f906628a31 100644 --- a/docs/version-specific/supported-software/c/CheMPS2.md +++ b/docs/version-specific/supported-software/c/CheMPS2.md @@ -10,7 +10,6 @@ CheMPS2 is a scientific library which contains a spin-adapted implementation of version | toolchain --------|---------- -``1.8.11`` | ``foss/2021b`` ``1.8.12`` | ``foss/2022a`` ``1.8.12`` | ``foss/2022b`` ``1.8.12`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/c/Check.md b/docs/version-specific/supported-software/c/Check.md index d34402ec82..30425c8e32 100644 --- a/docs/version-specific/supported-software/c/Check.md +++ b/docs/version-specific/supported-software/c/Check.md @@ -10,7 +10,6 @@ Check is a unit testing framework for C. It features a simple interface for defi version | toolchain --------|---------- -``0.15.2`` | ``GCCcore/11.2.0`` ``0.15.2`` | ``GCCcore/11.3.0`` ``0.15.2`` | ``GCCcore/12.2.0`` ``0.15.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/c/CheckM.md b/docs/version-specific/supported-software/c/CheckM.md index 4a3cad682d..ea9f65b2ab 100644 --- a/docs/version-specific/supported-software/c/CheckM.md +++ b/docs/version-specific/supported-software/c/CheckM.md @@ -11,7 +11,6 @@ CheckM provides a set of tools for assessing the quality of genomes recovered fr version | versionsuffix | toolchain --------|---------------|---------- ``1.0.18`` | ``-Python-2.7.18`` | ``foss/2023a`` -``1.1.3`` | | ``foss/2021b`` ``1.2.2`` | | ``foss/2022a`` ``1.2.3`` | | ``foss/2023b`` ``1.2.4`` | | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/c/Clang-AOMP.md b/docs/version-specific/supported-software/c/Clang-AOMP.md deleted file mode 100644 index c7865fd7b4..0000000000 --- a/docs/version-specific/supported-software/c/Clang-AOMP.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Clang-AOMP - -AOMP is an open source Clang/LLVM based compiler with added support for the OpenMP® API on Radeon™ GPUs. - -*homepage*: - -version | toolchain ---------|---------- -``4.5.0`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/Clang-Python-bindings.md b/docs/version-specific/supported-software/c/Clang-Python-bindings.md index 1ad30a2546..895b1a4fc3 100644 --- a/docs/version-specific/supported-software/c/Clang-Python-bindings.md +++ b/docs/version-specific/supported-software/c/Clang-Python-bindings.md @@ -10,7 +10,6 @@ Python bindings for libclang version | toolchain --------|---------- -``13.0.1`` | ``GCCcore/11.2.0`` ``13.0.1`` | ``GCCcore/11.3.0`` ``16.0.6`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/c/Clang.md b/docs/version-specific/supported-software/c/Clang.md index a4e1e82d84..56d66945ff 100644 --- a/docs/version-specific/supported-software/c/Clang.md +++ b/docs/version-specific/supported-software/c/Clang.md @@ -10,9 +10,6 @@ C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard lib version | versionsuffix | toolchain --------|---------------|---------- -``12.0.1`` | | ``GCCcore/11.2.0`` -``13.0.1`` | ``-CUDA-11.4.1`` | ``GCCcore/11.2.0`` -``13.0.1`` | | ``GCCcore/11.2.0`` ``13.0.1`` | ``-CUDA-11.7.0`` | ``GCCcore/11.3.0`` ``13.0.1`` | | ``GCCcore/11.3.0`` ``15.0.5`` | | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/c/Clarabel.rs.md b/docs/version-specific/supported-software/c/Clarabel.rs.md index bc6f8f5a79..1c87e114a6 100644 --- a/docs/version-specific/supported-software/c/Clarabel.rs.md +++ b/docs/version-specific/supported-software/c/Clarabel.rs.md @@ -10,6 +10,7 @@ Interior-point solver for convex conic optimisation problems in Rust. version | toolchain --------|---------- +``0.11.1`` | ``gfbf/2024a`` ``0.7.1`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/c/Clp.md b/docs/version-specific/supported-software/c/Clp.md index ac247e40da..5cae35f92d 100644 --- a/docs/version-specific/supported-software/c/Clp.md +++ b/docs/version-specific/supported-software/c/Clp.md @@ -13,7 +13,6 @@ version | toolchain ``1.17.10`` | ``foss/2024a`` ``1.17.10`` | ``foss/2025a`` ``1.17.10`` | ``foss/2025b`` -``1.17.7`` | ``foss/2021b`` ``1.17.8`` | ``foss/2022b`` ``1.17.9`` | ``foss/2023a`` ``1.17.9`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/c/Clustal-Omega.md b/docs/version-specific/supported-software/c/Clustal-Omega.md index 9b1f2f07c4..3f03e54399 100644 --- a/docs/version-specific/supported-software/c/Clustal-Omega.md +++ b/docs/version-specific/supported-software/c/Clustal-Omega.md @@ -10,7 +10,6 @@ Clustal Omega is a multiple sequence alignment program for proteins. It produce version | toolchain --------|---------- -``1.2.4`` | ``GCC/11.2.0`` ``1.2.4`` | ``GCC/12.3.0`` ``1.2.4`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/c/ClustalW2.md b/docs/version-specific/supported-software/c/ClustalW2.md index f7af6e19dd..8e5132c414 100644 --- a/docs/version-specific/supported-software/c/ClustalW2.md +++ b/docs/version-specific/supported-software/c/ClustalW2.md @@ -10,7 +10,6 @@ ClustalW2 is a general purpose multiple sequence alignment program for DNA or pr version | toolchain --------|---------- -``2.1`` | ``GCC/11.2.0`` ``2.1`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/c/CmdStanR.md b/docs/version-specific/supported-software/c/CmdStanR.md index 868deddbe1..d58b87399b 100644 --- a/docs/version-specific/supported-software/c/CmdStanR.md +++ b/docs/version-specific/supported-software/c/CmdStanR.md @@ -10,7 +10,6 @@ CmdStanR is a lightweight interface to Stan for R users version | versionsuffix | toolchain --------|---------------|---------- -``0.5.0`` | ``-R-4.1.2`` | ``foss/2021b`` ``0.5.2`` | ``-R-4.2.1`` | ``foss/2022a`` ``0.7.1`` | ``-R-4.3.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/c/CodAn.md b/docs/version-specific/supported-software/c/CodAn.md deleted file mode 100644 index 7bf2d8d54b..0000000000 --- a/docs/version-specific/supported-software/c/CodAn.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# CodAn - -CodAn (Coding sequence Annotator) is a computational tool designed to characterize the CDS and UTR regions on transcripts from any Eukaryote species. - -*homepage*: - -version | toolchain ---------|---------- -``1.2`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CodingQuarry.md b/docs/version-specific/supported-software/c/CodingQuarry.md index 769db6b134..f46cdc61ad 100644 --- a/docs/version-specific/supported-software/c/CodingQuarry.md +++ b/docs/version-specific/supported-software/c/CodingQuarry.md @@ -10,7 +10,6 @@ Highly accurate hidden Markov model gene prediction in fungal genomes using RNA- version | toolchain --------|---------- -``2.0`` | ``foss/2021b`` ``2.0`` | ``foss/2023a`` ``2.0`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/c/Coin.md b/docs/version-specific/supported-software/c/Coin.md deleted file mode 100644 index 8bfa8c452e..0000000000 --- a/docs/version-specific/supported-software/c/Coin.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Coin - -Coin is an OpenGL-based, 3D graphics library that has its roots in the Open Inventor 2.1 API, which Coin still is compatible with. - -*homepage*: - -version | toolchain ---------|---------- -``4.0.0`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CoinUtils.md b/docs/version-specific/supported-software/c/CoinUtils.md index 50fd9513e9..9561c734f6 100644 --- a/docs/version-specific/supported-software/c/CoinUtils.md +++ b/docs/version-specific/supported-software/c/CoinUtils.md @@ -15,7 +15,6 @@ version | toolchain ``2.11.12`` | ``GCC/13.3.0`` ``2.11.12`` | ``GCC/14.2.0`` ``2.11.12`` | ``GCC/14.3.0`` -``2.11.6`` | ``GCC/11.2.0`` ``2.11.9`` | ``GCC/12.2.0`` diff --git a/docs/version-specific/supported-software/c/ColabFold.md b/docs/version-specific/supported-software/c/ColabFold.md index 3724017a65..ba0e90bfe1 100644 --- a/docs/version-specific/supported-software/c/ColabFold.md +++ b/docs/version-specific/supported-software/c/ColabFold.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``1.5.2`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``1.5.2`` | | ``foss/2022a`` +``1.5.5`` | | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CompareM.md b/docs/version-specific/supported-software/c/CompareM.md index 6f90322520..c8c0ae0a08 100644 --- a/docs/version-specific/supported-software/c/CompareM.md +++ b/docs/version-specific/supported-software/c/CompareM.md @@ -10,7 +10,6 @@ A toolbox for comparative genomics. version | toolchain --------|---------- -``0.1.2`` | ``foss/2021b`` ``0.1.2`` | ``gfbf/2023b`` diff --git a/docs/version-specific/supported-software/c/Compass.md b/docs/version-specific/supported-software/c/Compass.md deleted file mode 100644 index b760ba94f4..0000000000 --- a/docs/version-specific/supported-software/c/Compass.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Compass - -In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes. - -*homepage*: - -version | toolchain ---------|---------- -``2024.04`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/ConcurrentVersionsSystem.md b/docs/version-specific/supported-software/c/ConcurrentVersionsSystem.md index b88bb71ea9..789ebca62c 100644 --- a/docs/version-specific/supported-software/c/ConcurrentVersionsSystem.md +++ b/docs/version-specific/supported-software/c/ConcurrentVersionsSystem.md @@ -10,7 +10,6 @@ CVS is a version control system, an important component of Source Configuration version | toolchain --------|---------- -``1.11.23`` | ``GCCcore/11.2.0`` ``1.11.23`` | ``GCCcore/13.3.0`` ``1.11.23`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/c/CoordgenLibs.md b/docs/version-specific/supported-software/c/CoordgenLibs.md index 1e3b93b0bc..8808cc2a09 100644 --- a/docs/version-specific/supported-software/c/CoordgenLibs.md +++ b/docs/version-specific/supported-software/c/CoordgenLibs.md @@ -15,6 +15,7 @@ version | toolchain ``3.0.2`` | ``gompi/2023b`` ``3.0.2`` | ``gompi/2024a`` ``3.0.2`` | ``gompi/2025a`` +``3.0.2`` | ``gompi/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/Coreutils.md b/docs/version-specific/supported-software/c/Coreutils.md index d018f86092..ab8212353f 100644 --- a/docs/version-specific/supported-software/c/Coreutils.md +++ b/docs/version-specific/supported-software/c/Coreutils.md @@ -10,7 +10,6 @@ The GNU Core Utilities are the basic file, shell and text manipulation utilities version | toolchain --------|---------- -``9.0`` | ``GCCcore/11.2.0`` ``9.1`` | ``GCCcore/11.3.0`` ``9.1`` | ``GCCcore/12.2.0`` ``9.5`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/c/CppHeaderParser.md b/docs/version-specific/supported-software/c/CppHeaderParser.md index c85db1f6c1..e50e8010c8 100644 --- a/docs/version-specific/supported-software/c/CppHeaderParser.md +++ b/docs/version-specific/supported-software/c/CppHeaderParser.md @@ -11,6 +11,7 @@ CppHeaderParser is a pure python module that will parse C++ header files and gen version | toolchain --------|---------- ``2.7.4`` | ``GCCcore/11.3.0`` +``2.7.4`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CppUnit.md b/docs/version-specific/supported-software/c/CppUnit.md index 2d72376316..409a181066 100644 --- a/docs/version-specific/supported-software/c/CppUnit.md +++ b/docs/version-specific/supported-software/c/CppUnit.md @@ -13,6 +13,7 @@ version | toolchain ``1.15.1`` | ``GCCcore/11.3.0`` ``1.15.1`` | ``GCCcore/12.2.0`` ``1.15.1`` | ``GCCcore/12.3.0`` +``1.15.1`` | ``GCCcore/13.2.0`` ``1.15.1`` | ``GCCcore/13.3.0`` ``1.15.1`` | ``GCCcore/14.2.0`` diff --git a/docs/version-specific/supported-software/c/Crumble.md b/docs/version-specific/supported-software/c/Crumble.md deleted file mode 100644 index 7d5ddff6a8..0000000000 --- a/docs/version-specific/supported-software/c/Crumble.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Crumble - -Exploration of controlled loss of quality values for compressing CRAM files - -*homepage*: - -version | toolchain ---------|---------- -``0.8.3`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/CuPy.md b/docs/version-specific/supported-software/c/CuPy.md index dc264641a5..12cc478386 100644 --- a/docs/version-specific/supported-software/c/CuPy.md +++ b/docs/version-specific/supported-software/c/CuPy.md @@ -10,7 +10,6 @@ CuPy is an open-source array library accelerated with NVIDIA CUDA. version | versionsuffix | toolchain --------|---------------|---------- -``11.4.0`` | ``-CUDA-11.4.1`` | ``foss/2021b`` ``12.1.0`` | ``-CUDA-12.0.0`` | ``foss/2022b`` ``13.0.0`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``13.6.0`` | ``-CUDA-12.6.0`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/c/CubeLib.md b/docs/version-specific/supported-software/c/CubeLib.md index cad28b250d..b749ed80f1 100644 --- a/docs/version-specific/supported-software/c/CubeLib.md +++ b/docs/version-specific/supported-software/c/CubeLib.md @@ -10,7 +10,6 @@ Cube, which is used as performance report explorer for Scalasca and Score-P, is version | toolchain --------|---------- -``4.8`` | ``GCCcore/11.2.0`` ``4.8`` | ``GCCcore/11.3.0`` ``4.8.1`` | ``GCCcore/12.2.0`` ``4.8.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/c/CubeWriter.md b/docs/version-specific/supported-software/c/CubeWriter.md index 22a310433c..9f5b815501 100644 --- a/docs/version-specific/supported-software/c/CubeWriter.md +++ b/docs/version-specific/supported-software/c/CubeWriter.md @@ -10,7 +10,6 @@ Cube, which is used as performance report explorer for Scalasca and Score-P, is version | toolchain --------|---------- -``4.8`` | ``GCCcore/11.2.0`` ``4.8`` | ``GCCcore/11.3.0`` ``4.8.1`` | ``GCCcore/12.2.0`` ``4.8.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/c/Cufflinks.md b/docs/version-specific/supported-software/c/Cufflinks.md index 579e7ecb29..dc2cc99e41 100644 --- a/docs/version-specific/supported-software/c/Cufflinks.md +++ b/docs/version-specific/supported-software/c/Cufflinks.md @@ -10,7 +10,6 @@ Transcript assembly, differential expression, and differential regulation for RN version | toolchain --------|---------- -``20190706`` | ``GCC/11.2.0`` ``20190706`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/c/c-ares.md b/docs/version-specific/supported-software/c/c-ares.md index 4cb24ce293..13a44b8949 100644 --- a/docs/version-specific/supported-software/c/c-ares.md +++ b/docs/version-specific/supported-software/c/c-ares.md @@ -10,7 +10,6 @@ c-ares is a C library for asynchronous DNS requests (including name resolves) version | toolchain --------|---------- -``1.18.1`` | ``GCCcore/11.2.0`` ``1.18.1`` | ``GCCcore/11.3.0`` ``1.19.1`` | ``GCCcore/12.3.0`` ``1.27.0`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/c/cURL.md b/docs/version-specific/supported-software/c/cURL.md index d7b3a4e921..ae3557a80d 100644 --- a/docs/version-specific/supported-software/c/cURL.md +++ b/docs/version-specific/supported-software/c/cURL.md @@ -10,7 +10,6 @@ libcurl is a free and easy-to-use client-side URL transfer library, supporting version | toolchain --------|---------- -``7.78.0`` | ``GCCcore/11.2.0`` ``7.83.0`` | ``GCCcore/11.3.0`` ``7.84.0`` | ``GCCcore/12.1.0`` ``7.86.0`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/c/cairo.md b/docs/version-specific/supported-software/c/cairo.md index 1051dd2113..a5d9bfd5f3 100644 --- a/docs/version-specific/supported-software/c/cairo.md +++ b/docs/version-specific/supported-software/c/cairo.md @@ -10,7 +10,6 @@ Cairo is a 2D graphics library with support for multiple output devices. Curren version | toolchain --------|---------- -``1.16.0`` | ``GCCcore/11.2.0`` ``1.17.4`` | ``GCCcore/11.3.0`` ``1.17.4`` | ``GCCcore/12.2.0`` ``1.17.8`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/c/canu.md b/docs/version-specific/supported-software/c/canu.md index 44a6352803..82a0fa599f 100644 --- a/docs/version-specific/supported-software/c/canu.md +++ b/docs/version-specific/supported-software/c/canu.md @@ -11,7 +11,6 @@ Canu is a fork of the Celera Assembler designed for high-noise single-molecule s version | versionsuffix | toolchain --------|---------------|---------- ``2.2`` | | ``GCC/12.2.0`` -``2.2`` | | ``GCCcore/11.2.0`` ``2.2`` | | ``GCCcore/11.3.0`` ``2.3`` | ``-Java-11`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/c/casacore.md b/docs/version-specific/supported-software/c/casacore.md index 94f2f0f517..1f75bf9cae 100644 --- a/docs/version-specific/supported-software/c/casacore.md +++ b/docs/version-specific/supported-software/c/casacore.md @@ -4,13 +4,12 @@ search: --- # casacore -A suite of C++ libraries for radio astronomy data processing. The ephemerides data needs to be in DATA_DIR and the location must be specified at runtime. Thus user's can update them. +A suite of C++ libraries for radio astronomy data processing. *homepage*: version | toolchain --------|---------- -``3.4.0`` | ``foss/2021b`` ``3.5.0`` | ``foss/2022a`` ``3.5.0`` | ``foss/2023b`` ``3.7.1`` | ``foss/2025b`` diff --git a/docs/version-specific/supported-software/c/CIRCexplorer2.md b/docs/version-specific/supported-software/c/cascadia.md similarity index 76% rename from docs/version-specific/supported-software/c/CIRCexplorer2.md rename to docs/version-specific/supported-software/c/cascadia.md index 4102f55572..3d2ed3fabf 100644 --- a/docs/version-specific/supported-software/c/CIRCexplorer2.md +++ b/docs/version-specific/supported-software/c/cascadia.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# CIRCexplorer2 +# cascadia -CIRCexplorer2 is a comprehensive and integrative circular RNA analysis toolset. +Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.3.8`` | ``-Python-2.7.18`` | ``foss/2021b`` +``0.0.7`` | ``-CUDA-12.6.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/category_encoders.md b/docs/version-specific/supported-software/c/category_encoders.md deleted file mode 100644 index 599b3b9f06..0000000000 --- a/docs/version-specific/supported-software/c/category_encoders.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# category_encoders - -A set of scikit-learn-style transformers for encoding categorical variables into numeric by means of different techniques. - -*homepage*: - -version | toolchain ---------|---------- -``2.4.1`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/ccache.md b/docs/version-specific/supported-software/c/ccache.md index e402cdd3d0..9a91dc3f5e 100644 --- a/docs/version-specific/supported-software/c/ccache.md +++ b/docs/version-specific/supported-software/c/ccache.md @@ -13,7 +13,6 @@ version | toolchain ``4.10.2`` | ``GCCcore/13.3.0`` ``4.11.3`` | ``GCCcore/14.2.0`` ``4.11.3`` | ``GCCcore/14.3.0`` -``4.6.1`` | ``GCCcore/11.2.0`` ``4.6.3`` | ``GCCcore/11.3.0`` ``4.6.3`` | ``system`` ``4.7.5`` | ``system`` diff --git a/docs/version-specific/supported-software/c/cclib.md b/docs/version-specific/supported-software/c/cclib.md index 1cdb21d416..e54a891c0d 100644 --- a/docs/version-specific/supported-software/c/cclib.md +++ b/docs/version-specific/supported-software/c/cclib.md @@ -10,7 +10,6 @@ cclib is a Python library that provides parsers for computational chemistry log version | toolchain --------|---------- -``1.7.2`` | ``foss/2021b`` ``1.8`` | ``foss/2023a`` ``1.8.1`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/c/cdo-bindings.md b/docs/version-specific/supported-software/c/cdo-bindings.md index dbd6b84457..e39b932005 100644 --- a/docs/version-specific/supported-software/c/cdo-bindings.md +++ b/docs/version-specific/supported-software/c/cdo-bindings.md @@ -10,7 +10,6 @@ Python interface to CDO. version | toolchain --------|---------- -``1.5.7`` | ``foss/2021b`` ``1.6.0`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/c/cimfomfa.md b/docs/version-specific/supported-software/c/cimfomfa.md index 2df75a3e23..b70d3b111a 100644 --- a/docs/version-specific/supported-software/c/cimfomfa.md +++ b/docs/version-specific/supported-software/c/cimfomfa.md @@ -10,12 +10,12 @@ This library supports both MCL, a cluster algorithm for graphs, and zoem, a macr version | toolchain --------|---------- -``22.273`` | ``GCCcore/11.2.0`` ``22.273`` | ``GCCcore/11.3.0`` ``22.273`` | ``GCCcore/12.3.0`` ``22.273`` | ``GCCcore/13.2.0`` ``22.273`` | ``GCCcore/13.3.0`` ``22.273`` | ``GCCcore/14.2.0`` +``22.273`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/code-cli.md b/docs/version-specific/supported-software/c/code-cli.md index 813b5510c0..7ce7f31511 100644 --- a/docs/version-specific/supported-software/c/code-cli.md +++ b/docs/version-specific/supported-software/c/code-cli.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``1.103.2`` | | ``system`` ``1.104.1`` | | ``system`` ``1.105.1`` | | ``system`` +``1.108.1`` | | ``system`` ``1.85.1`` | ``-x64`` | ``system`` ``1.93.1`` | ``-x64`` | ``system`` ``1.97.2`` | | ``system`` diff --git a/docs/version-specific/supported-software/c/code-server.md b/docs/version-specific/supported-software/c/code-server.md index 6b47417e93..50b9443ee0 100644 --- a/docs/version-specific/supported-software/c/code-server.md +++ b/docs/version-specific/supported-software/c/code-server.md @@ -17,6 +17,7 @@ version | toolchain ``4.104.2`` | ``system`` ``4.104.3`` | ``system`` ``4.105.1`` | ``system`` +``4.108.1`` | ``system`` ``4.16.1`` | ``system`` ``4.21.1`` | ``system`` ``4.22.1`` | ``system`` diff --git a/docs/version-specific/supported-software/c/coremltools.md b/docs/version-specific/supported-software/c/coremltools.md new file mode 100644 index 0000000000..7a3b5d83ef --- /dev/null +++ b/docs/version-specific/supported-software/c/coremltools.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# coremltools + +Convert models from TensorFlow, PyTorch, and other libraries to Core ML. + +*homepage*: + +version | toolchain +--------|---------- +``8.3.0`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/cppy.md b/docs/version-specific/supported-software/c/cppy.md index e0b44efd75..551f711f09 100644 --- a/docs/version-specific/supported-software/c/cppy.md +++ b/docs/version-specific/supported-software/c/cppy.md @@ -10,7 +10,6 @@ A small C++ header library which makes it easier to write Python extension modul version | toolchain --------|---------- -``1.1.0`` | ``GCCcore/11.2.0`` ``1.2.1`` | ``GCCcore/11.3.0`` ``1.2.1`` | ``GCCcore/12.2.0`` ``1.2.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/c/cppzmq.md b/docs/version-specific/supported-software/c/cppzmq.md deleted file mode 100644 index bb269d2da0..0000000000 --- a/docs/version-specific/supported-software/c/cppzmq.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# cppzmq - -cppzmq is a C++ binding for libzmq. - -*homepage*: - -version | toolchain ---------|---------- -``4.9.0`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/c/cramjam.md b/docs/version-specific/supported-software/c/cramjam.md index 7ac2a34cdf..cf93f99fb6 100644 --- a/docs/version-specific/supported-software/c/cramjam.md +++ b/docs/version-specific/supported-software/c/cramjam.md @@ -10,6 +10,7 @@ Your go-to for easy access to a plethora of compression algorithms, all neatly b version | toolchain --------|---------- +``2.11.0`` | ``GCCcore/13.3.0`` ``2.9.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/c/crb-blast.md b/docs/version-specific/supported-software/c/crb-blast.md index 963dec77dd..20a456d47f 100644 --- a/docs/version-specific/supported-software/c/crb-blast.md +++ b/docs/version-specific/supported-software/c/crb-blast.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``0.6.9`` | ``GCC/12.3.0`` ``0.6.9`` | ``GCC/13.2.0`` -``0.6.9`` | ``gompi/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/crossguid.md b/docs/version-specific/supported-software/c/crossguid.md index 64abe9b8db..1dd2f9cd0e 100644 --- a/docs/version-specific/supported-software/c/crossguid.md +++ b/docs/version-specific/supported-software/c/crossguid.md @@ -10,7 +10,6 @@ CrossGuid is a minimal, cross platform, C++ GUID library. It uses the best nativ version | toolchain --------|---------- -``20190529`` | ``GCCcore/11.2.0`` ``20190529`` | ``GCCcore/11.3.0`` ``20190529`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/c/ctffind.md b/docs/version-specific/supported-software/c/ctffind.md index 94f186629e..0d62667d9e 100644 --- a/docs/version-specific/supported-software/c/ctffind.md +++ b/docs/version-specific/supported-software/c/ctffind.md @@ -10,7 +10,6 @@ Program for finding CTFs of electron micrographs. version | toolchain --------|---------- -``4.1.14`` | ``foss/2021b`` ``4.1.14`` | ``foss/2022a`` ``4.1.14`` | ``foss/2022b`` ``4.1.14`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/c/cuDNN.md b/docs/version-specific/supported-software/c/cuDNN.md index c3f7a77725..9758ba9b3d 100644 --- a/docs/version-specific/supported-software/c/cuDNN.md +++ b/docs/version-specific/supported-software/c/cuDNN.md @@ -10,8 +10,6 @@ The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library version | versionsuffix | toolchain --------|---------------|---------- -``8.1.0.77`` | ``-CUDA-11.2.1`` | ``system`` -``8.1.1.33`` | ``-CUDA-11.2.1`` | ``system`` ``8.2.1.32`` | ``-CUDA-11.3.1`` | ``system`` ``8.2.2.26`` | ``-CUDA-11.4.0`` | ``system`` ``8.2.2.26`` | ``-CUDA-11.4.1`` | ``system`` @@ -29,6 +27,7 @@ version | versionsuffix | toolchain ``9.0.0.312`` | ``-CUDA-12.4.0`` | ``system`` ``9.1.1.17`` | ``-CUDA-12.4.0`` | ``system`` ``9.10.1.4`` | ``-CUDA-12.8.0`` | ``system`` +``9.10.2.21`` | ``-CUDA-12.6.0`` | ``system`` ``9.15.0.57`` | ``-CUDA-12.9.1`` | ``system`` ``9.5.0.50`` | ``-CUDA-12.6.0`` | ``system`` ``9.5.1.17`` | ``-CUDA-12.6.0`` | ``system`` diff --git a/docs/version-specific/supported-software/c/cuTENSOR.md b/docs/version-specific/supported-software/c/cuTENSOR.md index c76fcd00bb..f488b26127 100644 --- a/docs/version-specific/supported-software/c/cuTENSOR.md +++ b/docs/version-specific/supported-software/c/cuTENSOR.md @@ -10,7 +10,6 @@ The cuTENSOR Library is a GPU-accelerated tensor linear algebra library providin version | versionsuffix | toolchain --------|---------------|---------- -``1.2.2.5`` | ``-CUDA-11.1.1`` | ``system`` ``1.6.0.3`` | ``-CUDA-11.3.1`` | ``system`` ``1.6.1.5`` | ``-CUDA-11.4.1`` | ``system`` ``1.6.1.5`` | ``-CUDA-11.7.0`` | ``system`` diff --git a/docs/version-specific/supported-software/c/cutadapt.md b/docs/version-specific/supported-software/c/cutadapt.md index 9bf88b6931..00f08a6d0a 100644 --- a/docs/version-specific/supported-software/c/cutadapt.md +++ b/docs/version-specific/supported-software/c/cutadapt.md @@ -11,7 +11,6 @@ Cutadapt finds and removes adapter sequences, primers, poly-A tails and other ty version | versionsuffix | toolchain --------|---------------|---------- ``1.18`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` -``3.5`` | | ``GCCcore/11.2.0`` ``4.2`` | | ``GCCcore/11.3.0`` ``4.4`` | | ``GCCcore/12.2.0`` ``4.9`` | | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/c/cvc5.md b/docs/version-specific/supported-software/c/cvc5.md new file mode 100644 index 0000000000..022e7611f1 --- /dev/null +++ b/docs/version-specific/supported-software/c/cvc5.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# cvc5 + +cvc5 is an efficient open-source automatic theorem prover for Satisfiability Modulo Theories (SMT) problems. It can be used to prove the satisfiability (or, dually, the validity) of first-order formulas with respect to (combinations of) a variety of useful background theories.It further provides a Syntax-Guided Synthesis (SyGuS) engine to synthesize functions with respect to background theories and their combinations. cvc5 is the successor of CVC4 and is intended to be an open and extensible SMT engine. + +*homepage*: + +version | toolchain +--------|---------- +``1.3.2`` | ``GCC/14.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/cython-cmake.md b/docs/version-specific/supported-software/c/cython-cmake.md index 0b7862ef79..f15a79377c 100644 --- a/docs/version-specific/supported-software/c/cython-cmake.md +++ b/docs/version-specific/supported-software/c/cython-cmake.md @@ -11,6 +11,7 @@ Custom CMake rules to generate the source code for a Python extension module usi version | toolchain --------|---------- ``0.2.0`` | ``GCCcore/13.2.0`` +``0.2.2`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/cyvcf2.md b/docs/version-specific/supported-software/c/cyvcf2.md index 060ef03a31..f81afdc213 100644 --- a/docs/version-specific/supported-software/c/cyvcf2.md +++ b/docs/version-specific/supported-software/c/cyvcf2.md @@ -11,6 +11,7 @@ cyvcf2 is a cython wrapper around htslib built for fast parsing of Variant Call version | toolchain --------|---------- ``0.31.1`` | ``gfbf/2023a`` +``0.32.1`` | ``gfbf/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/index.md b/docs/version-specific/supported-software/c/index.md index 00a36ce313..8582b1b27a 100644 --- a/docs/version-specific/supported-software/c/index.md +++ b/docs/version-specific/supported-software/c/index.md @@ -10,6 +10,7 @@ search: * [c-ares](c-ares.md) * [caddy](caddy.md) + * [CaDiCaL](CaDiCaL.md) * [CAESES](CAESES.md) * [cairo](cairo.md) * [cairomm](cairomm.md) @@ -27,7 +28,9 @@ search: * [Cartopy](Cartopy.md) * [CASA](CASA.md) * [casacore](casacore.md) + * [CasADi](CasADi.md) * [Casanovo](Casanovo.md) + * [cascadia](cascadia.md) * [CASPR](CASPR.md) * [Cassiopeia](Cassiopeia.md) * [CASTEP](CASTEP.md) @@ -35,7 +38,6 @@ search: * [CastXML](CastXML.md) * [CatBoost](CatBoost.md) * [Catch2](Catch2.md) - * [category_encoders](category_encoders.md) * [CatLearn](CatLearn.md) * [CatMAP](CatMAP.md) * [Cbc](Cbc.md) @@ -94,19 +96,15 @@ search: * [cicero](cicero.md) * [cimfomfa](cimfomfa.md) * [CIRCE](CIRCE.md) - * [CIRCexplorer2](CIRCexplorer2.md) * [Circlator](Circlator.md) * [Circos](Circos.md) * [Circuitscape](Circuitscape.md) - * [CIRIquant](CIRIquant.md) * [cisDIVERSITY](cisDIVERSITY.md) * [Clair3](Clair3.md) * [Clang](Clang.md) - * [Clang-AOMP](Clang-AOMP.md) * [Clang-Python-bindings](Clang-Python-bindings.md) * [CLANS](CLANS.md) * [Clarabel.rs](Clarabel.rs.md) - * [CLEAR](CLEAR.md) * [clearml](clearml.md) * [CLHEP](CLHEP.md) * [CLI11](CLI11.md) @@ -116,7 +114,6 @@ search: * [CLIP](CLIP.md) * [cliquer](cliquer.md) * [clisops](clisops.md) - * [CloudCompare](CloudCompare.md) * [Clp](Clp.md) * [CLUMPP](CLUMPP.md) * [Clustal-Omega](Clustal-Omega.md) @@ -124,7 +121,6 @@ search: * [ClustalW2](ClustalW2.md) * [Cluster-Buster](Cluster-Buster.md) * [CMake](CMake.md) - * [CMAverse](CMAverse.md) * [cmcrameri](cmcrameri.md) * [CmdStanR](CmdStanR.md) * [cmocean](cmocean.md) @@ -136,12 +132,10 @@ search: * [COAWST-deps](COAWST-deps.md) * [COBRApy](COBRApy.md) * [CoCoALib](CoCoALib.md) - * [CodAn](CodAn.md) * [code-cli](code-cli.md) * [code-server](code-server.md) * [CodingQuarry](CodingQuarry.md) * [CodonTransformer](CodonTransformer.md) - * [Coin](Coin.md) * [CoinUtils](CoinUtils.md) * [ColabFold](ColabFold.md) * [COLMAP](COLMAP.md) @@ -150,7 +144,6 @@ search: * [columba](columba.md) * [COMEBin](COMEBin.md) * [CompareM](CompareM.md) - * [Compass](Compass.md) * [compleasm](compleasm.md) * [Compress-Raw-Zlib](Compress-Raw-Zlib.md) * [COMSOL](COMSOL.md) @@ -171,8 +164,8 @@ search: * [CoordgenLibs](CoordgenLibs.md) * [Coot](Coot.md) * [CopyKAT](CopyKAT.md) + * [coremltools](coremltools.md) * [Coreutils](Coreutils.md) - * [corner](corner.md) * [CORSIKA](CORSIKA.md) * [COSTA](COSTA.md) * [CoSymLib](CoSymLib.md) @@ -192,7 +185,6 @@ search: * [CppUnit](CppUnit.md) * [cppy](cppy.md) * [cppyy](cppyy.md) - * [cppzmq](cppzmq.md) * [cpu_features](cpu_features.md) * [cramino](cramino.md) * [cramjam](cramjam.md) @@ -200,10 +192,8 @@ search: * [CREST](CREST.md) * [CRISPResso2](CRISPResso2.md) * [Critic2](Critic2.md) - * [cromwell](cromwell.md) * [crossguid](crossguid.md) * [CrossMap](CrossMap.md) - * [Crumble](Crumble.md) * [cryoCARE](cryoCARE.md) * [crypt4gh](crypt4gh.md) * [cryptography](cryptography.md) @@ -241,6 +231,7 @@ search: * [cuTENSOR](cuTENSOR.md) * [cuteSV](cuteSV.md) * [CUTLASS](CUTLASS.md) + * [cvc5](cvc5.md) * [CVglasso](CVglasso.md) * [CVX](CVX.md) * [CVXOPT](CVXOPT.md) diff --git a/docs/version-specific/supported-software/d/DAS_Tool.md b/docs/version-specific/supported-software/d/DAS_Tool.md index 3ab9c9dfa4..8c26205bd2 100644 --- a/docs/version-specific/supported-software/d/DAS_Tool.md +++ b/docs/version-specific/supported-software/d/DAS_Tool.md @@ -10,7 +10,6 @@ DAS Tool is an automated method that integrates the results of a flexible number version | versionsuffix | toolchain --------|---------------|---------- -``1.1.1`` | ``-R-4.1.2`` | ``foss/2021b`` ``1.1.7`` | ``-R-4.4.1`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/d/DB.md b/docs/version-specific/supported-software/d/DB.md index 4ede36201d..43f90673f1 100644 --- a/docs/version-specific/supported-software/d/DB.md +++ b/docs/version-specific/supported-software/d/DB.md @@ -10,7 +10,6 @@ Berkeley DB enables the development of custom data management solutions, withou version | toolchain --------|---------- -``18.1.40`` | ``GCCcore/11.2.0`` ``18.1.40`` | ``GCCcore/11.3.0`` ``18.1.40`` | ``GCCcore/12.1.0`` ``18.1.40`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/d/DBCSR.md b/docs/version-specific/supported-software/d/DBCSR.md deleted file mode 100644 index 906caa8707..0000000000 --- a/docs/version-specific/supported-software/d/DBCSR.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DBCSR - -DBCSR stands for Distributed Blocked Compressed Sparse Row. DBCSR is a library designed to efficiently perform sparse matrix-matrix multiplication, among other operations. - -*homepage*: - -version | toolchain ---------|---------- -``2.5.0`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/DBD-mysql.md b/docs/version-specific/supported-software/d/DBD-mysql.md index 715d7dac13..7ed7b473de 100644 --- a/docs/version-specific/supported-software/d/DBD-mysql.md +++ b/docs/version-specific/supported-software/d/DBD-mysql.md @@ -10,7 +10,6 @@ Perl binding for MySQL version | toolchain --------|---------- -``4.050`` | ``GCC/11.2.0`` ``4.050`` | ``GCC/11.3.0`` ``4.050`` | ``GCC/12.2.0`` ``4.050`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/d/DB_File.md b/docs/version-specific/supported-software/d/DB_File.md index 122b3283ec..4429d2629e 100644 --- a/docs/version-specific/supported-software/d/DB_File.md +++ b/docs/version-specific/supported-software/d/DB_File.md @@ -10,7 +10,6 @@ Perl5 access to Berkeley DB version 1.x. version | toolchain --------|---------- -``1.857`` | ``GCCcore/11.2.0`` ``1.858`` | ``GCCcore/11.3.0`` ``1.859`` | ``GCCcore/12.3.0`` ``1.859`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/d/DBus.md b/docs/version-specific/supported-software/d/DBus.md index 2813e0d2ce..04778ab243 100644 --- a/docs/version-specific/supported-software/d/DBus.md +++ b/docs/version-specific/supported-software/d/DBus.md @@ -10,7 +10,6 @@ D-Bus is a message bus system, a simple way for applications to talk to one ano version | toolchain --------|---------- -``1.13.18`` | ``GCCcore/11.2.0`` ``1.14.0`` | ``GCCcore/11.3.0`` ``1.15.2`` | ``GCCcore/12.2.0`` ``1.15.4`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/d/DCMTK.md b/docs/version-specific/supported-software/d/DCMTK.md index af5a228228..3ec578a857 100644 --- a/docs/version-specific/supported-software/d/DCMTK.md +++ b/docs/version-specific/supported-software/d/DCMTK.md @@ -10,7 +10,6 @@ DCMTK is a collection of libraries and applications implementing large parts the version | toolchain --------|---------- -``3.6.6`` | ``GCCcore/11.2.0`` ``3.6.7`` | ``GCCcore/11.3.0`` ``3.6.9`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/d/DFT-D3.md b/docs/version-specific/supported-software/d/DFT-D3.md index fe0b87c7b7..7645b2a8e1 100644 --- a/docs/version-specific/supported-software/d/DFT-D3.md +++ b/docs/version-specific/supported-software/d/DFT-D3.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``3.2.0`` | ``GCC/14.3.0`` ``3.2.0`` | ``intel/2023a`` -``3.2.0`` | ``intel-compilers/2021.4.0`` ``3.2.0`` | ``intel-compilers/2022.2.1`` ``3.2.0`` | ``intel-compilers/2025.2.0`` diff --git a/docs/version-specific/supported-software/d/DFT-D4.md b/docs/version-specific/supported-software/d/DFT-D4.md index 70055ca377..b844b91add 100644 --- a/docs/version-specific/supported-software/d/DFT-D4.md +++ b/docs/version-specific/supported-software/d/DFT-D4.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``3.6.0`` | ``intel/2022a`` ``3.7.0`` | ``gomkl/2023b`` +``4.0.2`` | ``gfbf/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DIA-NN.md b/docs/version-specific/supported-software/d/DIA-NN.md index 5094bf1ca9..8168314fb7 100644 --- a/docs/version-specific/supported-software/d/DIA-NN.md +++ b/docs/version-specific/supported-software/d/DIA-NN.md @@ -11,6 +11,7 @@ DIA-NN is a universal software for data-independent acquisition (DIA) proteomic version | toolchain --------|---------- ``1.8.1`` | ``system`` +``2.3.2`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DIALOGUE.md b/docs/version-specific/supported-software/d/DIALOGUE.md deleted file mode 100644 index 93496bd7d8..0000000000 --- a/docs/version-specific/supported-software/d/DIALOGUE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DIALOGUE - -DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0-20230228`` | ``-R-4.2.0`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/DIAMOND.md b/docs/version-specific/supported-software/d/DIAMOND.md index 031638dac4..312918ba39 100644 --- a/docs/version-specific/supported-software/d/DIAMOND.md +++ b/docs/version-specific/supported-software/d/DIAMOND.md @@ -10,7 +10,6 @@ Accelerated BLAST compatible local sequence aligner version | toolchain --------|---------- -``2.0.13`` | ``GCC/11.2.0`` ``2.1.0`` | ``GCC/11.3.0`` ``2.1.11`` | ``GCC/13.3.0`` ``2.1.14`` | ``GCC/14.2.0`` diff --git a/docs/version-specific/supported-software/d/DIRAC.md b/docs/version-specific/supported-software/d/DIRAC.md index 1830db6d2e..526a8bd03f 100644 --- a/docs/version-specific/supported-software/d/DIRAC.md +++ b/docs/version-specific/supported-software/d/DIRAC.md @@ -25,6 +25,9 @@ version | versionsuffix | toolchain ``25.0`` | ``-int64`` | ``intel/2022b`` ``25.0`` | ``-serial`` | ``intel/2023a`` ``25.0`` | | ``intel/2023a`` +``26.0`` | | ``foss/2025a`` +``26.0`` | ``-int64`` | ``intel/2025a`` +``26.0`` | | ``intel/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DMTCP.md b/docs/version-specific/supported-software/d/DMTCP.md index b358a34949..d54b7c3c4e 100644 --- a/docs/version-specific/supported-software/d/DMTCP.md +++ b/docs/version-specific/supported-software/d/DMTCP.md @@ -16,6 +16,7 @@ version | toolchain ``3.0.0`` | ``GCCcore/13.2.0`` ``4.0.0`` | ``GCCcore/14.2.0`` ``4.0.0`` | ``GCCcore/14.3.0`` +``4.1.0`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DRAGMAP.md b/docs/version-specific/supported-software/d/DRAGMAP.md index 0139341f37..e2efa7856f 100644 --- a/docs/version-specific/supported-software/d/DRAGMAP.md +++ b/docs/version-specific/supported-software/d/DRAGMAP.md @@ -11,7 +11,6 @@ Dragmap is the Dragen mapper/aligner Open Source Software. version | toolchain --------|---------- ``1.3.0`` | ``GCC/13.2.0`` -``1.3.0`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DRAM.md b/docs/version-specific/supported-software/d/DRAM.md new file mode 100644 index 0000000000..483007a292 --- /dev/null +++ b/docs/version-specific/supported-software/d/DRAM.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# DRAM + +Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes + +*homepage*: + +version | toolchain +--------|---------- +``1.5.0`` | ``foss/2025a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/d/DROP.md b/docs/version-specific/supported-software/d/DROP.md deleted file mode 100644 index c791aa469e..0000000000 --- a/docs/version-specific/supported-software/d/DROP.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DROP - -Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.1`` | ``-R-4.1.2`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/DUBStepR.md b/docs/version-specific/supported-software/d/DUBStepR.md deleted file mode 100644 index f8b1784f1d..0000000000 --- a/docs/version-specific/supported-software/d/DUBStepR.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DUBStepR - -DUBStepR (Determining the Underlying Basis using Step-wise Regression) is a feature selection algorithm for cell type identification in single-cell RNA-sequencing data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.2.0`` | ``-R-4.1.2`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/Dakota.md b/docs/version-specific/supported-software/d/Dakota.md index e9925a1392..3bd61b6932 100644 --- a/docs/version-specific/supported-software/d/Dakota.md +++ b/docs/version-specific/supported-software/d/Dakota.md @@ -10,7 +10,6 @@ The Dakota project delivers both state-of-the-art research and robust, usable s version | toolchain --------|---------- -``6.16.0`` | ``foss/2021b`` ``6.22.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/d/Dalton.md b/docs/version-specific/supported-software/d/Dalton.md index bdae888571..067843c3ab 100644 --- a/docs/version-specific/supported-software/d/Dalton.md +++ b/docs/version-specific/supported-software/d/Dalton.md @@ -8,9 +8,10 @@ The Dalton code is a powerful tool for a wide range of molecular properties at *homepage*: -version | toolchain ---------|---------- -``2020.1`` | ``foss/2022b`` +version | versionsuffix | toolchain +--------|---------------|---------- +``2020.1`` | | ``foss/2022b`` +``2026`` | ``-parallel`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DendroPy.md b/docs/version-specific/supported-software/d/DendroPy.md index 08907e982d..47f6e48886 100644 --- a/docs/version-specific/supported-software/d/DendroPy.md +++ b/docs/version-specific/supported-software/d/DendroPy.md @@ -10,7 +10,6 @@ A Python library for phylogenetics and phylogenetic computing: reading, writing, version | versionsuffix | toolchain --------|---------------|---------- -``4.5.2`` | | ``GCCcore/11.2.0`` ``4.5.2`` | | ``GCCcore/11.3.0`` ``4.5.2`` | | ``GCCcore/12.2.0`` ``4.5.2`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/d/DensPart.md b/docs/version-specific/supported-software/d/DensPart.md index 636e950ca9..48c6333279 100644 --- a/docs/version-specific/supported-software/d/DensPart.md +++ b/docs/version-specific/supported-software/d/DensPart.md @@ -11,6 +11,7 @@ Atoms-in-molecules density partitioning schemes based on stockholder recipe version | toolchain --------|---------- ``20220603`` | ``intel/2022a`` +``20251124`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/DjVuLibre.md b/docs/version-specific/supported-software/d/DjVuLibre.md index 4f0e714a6b..66ccb538bf 100644 --- a/docs/version-specific/supported-software/d/DjVuLibre.md +++ b/docs/version-specific/supported-software/d/DjVuLibre.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``3.5.28`` | ``GCCcore/12.3.0`` ``3.5.29`` | ``GCCcore/13.3.0`` +``3.5.29`` | ``GCCcore/14.2.0`` ``3.5.29`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/d/Doxygen.md b/docs/version-specific/supported-software/d/Doxygen.md index 1abb054796..b8a9493ad0 100644 --- a/docs/version-specific/supported-software/d/Doxygen.md +++ b/docs/version-specific/supported-software/d/Doxygen.md @@ -13,7 +13,6 @@ version | toolchain ``1.11.0`` | ``GCCcore/13.3.0`` ``1.14.0`` | ``GCCcore/14.2.0`` ``1.14.0`` | ``GCCcore/14.3.0`` -``1.9.1`` | ``GCCcore/11.2.0`` ``1.9.4`` | ``GCCcore/11.3.0`` ``1.9.5`` | ``GCCcore/12.2.0`` ``1.9.7`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/d/DualSPHysics.md b/docs/version-specific/supported-software/d/DualSPHysics.md index 026fd36d2c..191489923c 100644 --- a/docs/version-specific/supported-software/d/DualSPHysics.md +++ b/docs/version-specific/supported-software/d/DualSPHysics.md @@ -10,8 +10,6 @@ DualSPHysics is based on the Smoothed Particle Hydrodynamics model named SPHysic version | versionsuffix | toolchain --------|---------------|---------- -``5.0.175`` | ``-CUDA-%(cudaver)s`` | ``GCC/11.2.0`` -``5.0.175`` | | ``GCC/11.2.0`` ``5.4.0`` | ``-CUDA-%(cudaver)s`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/d/DyMat.md b/docs/version-specific/supported-software/d/DyMat.md deleted file mode 100644 index b133baca20..0000000000 --- a/docs/version-specific/supported-software/d/DyMat.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# DyMat - -Read and process result files from Dymola and OpenModelica with Python. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7`` | ``-2020-12-12`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/dask.md b/docs/version-specific/supported-software/d/dask.md index 4a44146b83..b0551bab57 100644 --- a/docs/version-specific/supported-software/d/dask.md +++ b/docs/version-specific/supported-software/d/dask.md @@ -10,7 +10,6 @@ Dask natively scales Python. Dask provides advanced parallelism for analytics, e version | toolchain --------|---------- -``2022.1.0`` | ``foss/2021b`` ``2022.10.0`` | ``foss/2022a`` ``2023.12.1`` | ``foss/2023a`` ``2023.7.1`` | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/d/dbus-glib.md b/docs/version-specific/supported-software/d/dbus-glib.md index 3bce93ddff..b30046c6dc 100644 --- a/docs/version-specific/supported-software/d/dbus-glib.md +++ b/docs/version-specific/supported-software/d/dbus-glib.md @@ -10,7 +10,6 @@ D-Bus is a message bus system, a simple way for applications to talk to one anot version | toolchain --------|---------- -``0.112`` | ``GCCcore/11.2.0`` ``0.112`` | ``GCCcore/11.3.0`` ``0.112`` | ``GCCcore/12.3.0`` ``0.114`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/d/deepTools.md b/docs/version-specific/supported-software/d/deepTools.md index 4ff6e278b8..c039383af9 100644 --- a/docs/version-specific/supported-software/d/deepTools.md +++ b/docs/version-specific/supported-software/d/deepTools.md @@ -10,7 +10,6 @@ deepTools is a suite of python tools particularly developed for the efficient an version | toolchain --------|---------- -``3.5.1`` | ``foss/2021b`` ``3.5.2`` | ``foss/2022a`` ``3.5.5`` | ``gfbf/2023a`` ``3.5.5`` | ``gfbf/2024a`` diff --git a/docs/version-specific/supported-software/d/deepdiff.md b/docs/version-specific/supported-software/d/deepdiff.md index f00bd76a30..78c3b164c0 100644 --- a/docs/version-specific/supported-software/d/deepdiff.md +++ b/docs/version-specific/supported-software/d/deepdiff.md @@ -10,7 +10,6 @@ DeepDiff: Deep Difference of dictionaries, iterables and almost any other object version | toolchain --------|---------- -``5.7.0`` | ``GCCcore/11.2.0`` ``5.8.1`` | ``GCCcore/11.3.0`` ``6.7.1`` | ``GCCcore/12.2.0`` ``6.7.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/d/dill.md b/docs/version-specific/supported-software/d/dill.md index 88f0675a8b..87e68c1f70 100644 --- a/docs/version-specific/supported-software/d/dill.md +++ b/docs/version-specific/supported-software/d/dill.md @@ -10,12 +10,12 @@ dill extends python's pickle module for serializing and de-serializing python ob version | toolchain --------|---------- -``0.3.4`` | ``GCCcore/11.2.0`` ``0.3.6`` | ``GCCcore/11.3.0`` ``0.3.7`` | ``GCCcore/12.2.0`` ``0.3.7`` | ``GCCcore/12.3.0`` ``0.3.8`` | ``GCCcore/13.2.0`` ``0.3.9`` | ``GCCcore/13.3.0`` +``0.4.0`` | ``GCCcore/14.2.0`` ``0.4.0`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/d/dm-haiku.md b/docs/version-specific/supported-software/d/dm-haiku.md index 74c814ce7a..9310e61188 100644 --- a/docs/version-specific/supported-software/d/dm-haiku.md +++ b/docs/version-specific/supported-software/d/dm-haiku.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.0.12`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``0.0.13`` | | ``foss/2023a`` +``0.0.16`` | | ``gfbf/2024a`` ``0.0.9`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.0.9`` | | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/d/dm-reverb.md b/docs/version-specific/supported-software/d/dm-reverb.md deleted file mode 100644 index 1c43aed2ae..0000000000 --- a/docs/version-specific/supported-software/d/dm-reverb.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# dm-reverb - -Reverb is an efficient and easy-to-use data storage and transport system designed for machine learning research. Reverb is primarily used as an experience replay system for distributed reinforcement learning algorithms but the system also supports multiple data structure representations such as FIFO, LIFO, and priority queues. - -*homepage*: - -version | toolchain ---------|---------- -``0.7.0`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/d/dm-tree.md b/docs/version-specific/supported-software/d/dm-tree.md index b7d7aab362..2e717015a1 100644 --- a/docs/version-specific/supported-software/d/dm-tree.md +++ b/docs/version-specific/supported-software/d/dm-tree.md @@ -10,7 +10,6 @@ dm-tree provides tree, a library for working with nested data structures. In a w version | toolchain --------|---------- -``0.1.6`` | ``GCCcore/11.2.0`` ``0.1.8`` | ``GCCcore/11.3.0`` ``0.1.8`` | ``GCCcore/12.3.0`` ``0.1.9`` | ``gfbf/2024a`` diff --git a/docs/version-specific/supported-software/d/docopt.cpp.md b/docs/version-specific/supported-software/d/docopt.cpp.md new file mode 100644 index 0000000000..ff5b332ea4 --- /dev/null +++ b/docs/version-specific/supported-software/d/docopt.cpp.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# docopt.cpp + +docopt helps you create most beautiful command-line interfaces easily. This is a port of docopt written in C++11. + +*homepage*: + +version | toolchain +--------|---------- +``0.6.3-400e6dd`` | ``GCCcore/13.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/d/double-conversion.md b/docs/version-specific/supported-software/d/double-conversion.md index ded9a334b1..b1a9721886 100644 --- a/docs/version-specific/supported-software/d/double-conversion.md +++ b/docs/version-specific/supported-software/d/double-conversion.md @@ -10,7 +10,6 @@ Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles version | toolchain --------|---------- -``3.1.5`` | ``GCCcore/11.2.0`` ``3.2.0`` | ``GCCcore/11.3.0`` ``3.2.1`` | ``GCCcore/12.2.0`` ``3.3.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/d/draco.md b/docs/version-specific/supported-software/d/draco.md index 921d62a852..11e44bd3c7 100644 --- a/docs/version-specific/supported-software/d/draco.md +++ b/docs/version-specific/supported-software/d/draco.md @@ -11,6 +11,9 @@ search: version | toolchain --------|---------- ``1.5.7`` | ``foss/2023a`` +``1.5.7`` | ``foss/2024a`` +``1.5.7`` | ``foss/2025a`` +``1.5.7`` | ``foss/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/d/index.md b/docs/version-specific/supported-software/d/index.md index 432f8fe626..6559497d9f 100644 --- a/docs/version-specific/supported-software/d/index.md +++ b/docs/version-specific/supported-software/d/index.md @@ -23,7 +23,6 @@ search: * [davix](davix.md) * [DB](DB.md) * [DB_File](DB_File.md) - * [DBCSR](DBCSR.md) * [DBD-mysql](DBD-mysql.md) * [DBG2OLC](DBG2OLC.md) * [dblatex](dblatex.md) @@ -61,7 +60,6 @@ search: * [dftd4](dftd4.md) * [DGL](DGL.md) * [DIA-NN](DIA-NN.md) - * [DIALOGUE](DIALOGUE.md) * [DIAMOND](DIAMOND.md) * [Dice](Dice.md) * [DiCE-ML](DiCE-ML.md) @@ -81,10 +79,10 @@ search: * [DLPack](DLPack.md) * [dm-control](dm-control.md) * [dm-haiku](dm-haiku.md) - * [dm-reverb](dm-reverb.md) * [dm-tree](dm-tree.md) * [DMLC-Core](DMLC-Core.md) * [DMTCP](DMTCP.md) + * [docopt.cpp](docopt.cpp.md) * [dominate](dominate.md) * [dorado](dorado.md) * [dotNET-Core](dotNET-Core.md) @@ -96,19 +94,17 @@ search: * [dpcpp](dpcpp.md) * [draco](draco.md) * [DRAGMAP](DRAGMAP.md) + * [DRAM](DRAM.md) * [dRep](dRep.md) * [drmaa-python](drmaa-python.md) - * [DROP](DROP.md) * [dssp](dssp.md) * [dtc](dtc.md) * [dtcmp](dtcmp.md) * [DualSPHysics](DualSPHysics.md) * [dub](dub.md) - * [DUBStepR](DUBStepR.md) * [duplex-tools](duplex-tools.md) * [dx-toolkit](dx-toolkit.md) * [dxpy](dxpy.md) - * [DyMat](DyMat.md) * [Dynare](Dynare.md) * [dynesty](dynesty.md) * [Dyninst](Dyninst.md) diff --git a/docs/version-specific/supported-software/e/EGTtools.md b/docs/version-specific/supported-software/e/EGTtools.md index e4a9877bf5..931b4418fe 100644 --- a/docs/version-specific/supported-software/e/EGTtools.md +++ b/docs/version-specific/supported-software/e/EGTtools.md @@ -10,7 +10,6 @@ EGTtools provides a centralized repository with analytical and numerical methods version | toolchain --------|---------- -``0.1.10.dev2`` | ``foss/2021b`` ``0.1.11`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/e/ELPA.md b/docs/version-specific/supported-software/e/ELPA.md index fbc515a5bb..2c3ed57f80 100644 --- a/docs/version-specific/supported-software/e/ELPA.md +++ b/docs/version-specific/supported-software/e/ELPA.md @@ -4,17 +4,13 @@ search: --- # ELPA -Eigenvalue SoLvers for Petaflop-Applications . +Eigenvalue SoLvers for Petaflop-Applications. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2021.05.001`` | | ``foss/2021b`` -``2021.05.001`` | | ``intel/2021b`` -``2021.11.001`` | | ``foss/2021b`` ``2021.11.001`` | | ``foss/2022a`` -``2021.11.001`` | | ``intel/2021b`` ``2021.11.001`` | | ``intel/2022a`` ``2021.11.001`` | | ``intel/2022b`` ``2022.05.001`` | ``-CUDA-11.7.0`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/e/ELSI-RCI.md b/docs/version-specific/supported-software/e/ELSI-RCI.md deleted file mode 100644 index 4842375799..0000000000 --- a/docs/version-specific/supported-software/e/ELSI-RCI.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ELSI-RCI - -ELSI-RCI provides and enhances open-source software packages which iteratively solve or circumvent eigenvalue problems in self-consistent field calculations based on the Kohn-Sham density-functional theory. - -*homepage*: - -version | toolchain ---------|---------- -``0.1.0`` | ``GCC/11.2.0`` -``0.1.0`` | ``intel-compilers/2021.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/e/EMBOSS.md b/docs/version-specific/supported-software/e/EMBOSS.md index 6d33dc1c1a..817f344d24 100644 --- a/docs/version-specific/supported-software/e/EMBOSS.md +++ b/docs/version-specific/supported-software/e/EMBOSS.md @@ -6,11 +6,10 @@ search: EMBOSS is 'The European Molecular Biology Open Software Suite' . EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. -*homepage*: +*homepage*: version | toolchain --------|---------- -``6.6.0`` | ``foss/2021b`` ``6.6.0`` | ``foss/2023a`` ``6.6.0`` | ``foss/2024a`` ``6.6.0`` | ``foss/2025a`` diff --git a/docs/version-specific/supported-software/e/ESMF.md b/docs/version-specific/supported-software/e/ESMF.md index c69202e832..1d99f1f0d9 100644 --- a/docs/version-specific/supported-software/e/ESMF.md +++ b/docs/version-specific/supported-software/e/ESMF.md @@ -10,8 +10,6 @@ The Earth System Modeling Framework (ESMF) is a suite of software tools for deve version | toolchain --------|---------- -``8.2.0`` | ``foss/2021b`` -``8.2.0`` | ``intel/2021b`` ``8.3.0`` | ``foss/2022a`` ``8.3.0`` | ``intel/2022a`` ``8.4.2`` | ``foss/2022a`` @@ -19,6 +17,7 @@ version | toolchain ``8.6.1`` | ``foss/2023b`` ``8.6.1`` | ``intel/2023b`` ``8.7.0`` | ``foss/2024a`` +``8.9.0`` | ``foss/2025a`` ``8.9.0`` | ``intel/2025b`` diff --git a/docs/version-specific/supported-software/e/ESPResSo.md b/docs/version-specific/supported-software/e/ESPResSo.md index 627f29d8b2..562614f1f8 100644 --- a/docs/version-specific/supported-software/e/ESPResSo.md +++ b/docs/version-specific/supported-software/e/ESPResSo.md @@ -18,6 +18,7 @@ version | versionsuffix | toolchain ``4.2.2`` | | ``foss/2023b`` ``4.2.2`` | ``-CUDA-12.6.0`` | ``foss/2024a`` ``4.2.2`` | | ``foss/2025a`` +``4.2.2`` | | ``foss/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/ETE.md b/docs/version-specific/supported-software/e/ETE.md index a6a69de244..8cbfec4b5f 100644 --- a/docs/version-specific/supported-software/e/ETE.md +++ b/docs/version-specific/supported-software/e/ETE.md @@ -10,7 +10,6 @@ A Python framework for the analysis and visualization of trees version | toolchain --------|---------- -``3.1.2`` | ``foss/2021b`` ``3.1.3`` | ``foss/2022b`` ``3.1.3`` | ``foss/2023a`` ``3.1.3`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/e/EasyBuild.md b/docs/version-specific/supported-software/e/EasyBuild.md index 119ed6aedc..637770dd2f 100644 --- a/docs/version-specific/supported-software/e/EasyBuild.md +++ b/docs/version-specific/supported-software/e/EasyBuild.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``0.5.0.0beta1`` | ``system`` ``0.5.0.0beta2`` | ``system`` -``4.3.3`` | ``system`` ``4.3.4`` | ``system`` ``4.4.0`` | ``system`` ``4.4.1`` | ``system`` @@ -42,6 +41,7 @@ version | toolchain ``5.1.1`` | ``system`` ``5.1.2`` | ``system`` ``5.2.0`` | ``system`` +``5.2.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/EasyOCR.md b/docs/version-specific/supported-software/e/EasyOCR.md new file mode 100644 index 0000000000..7739a212fc --- /dev/null +++ b/docs/version-specific/supported-software/e/EasyOCR.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# EasyOCR + +EasyOCR is a ready-to-use OCR with 80+ supported languages and all popular writing scripts including: Latin, Chinese, Arabic, Devanagari, Cyrillic, etc. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``1.7.2`` | ``-CUDA-12.1.1`` | ``foss/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/e/Eigen.md b/docs/version-specific/supported-software/e/Eigen.md index ed6517bdfe..071097be76 100644 --- a/docs/version-specific/supported-software/e/Eigen.md +++ b/docs/version-specific/supported-software/e/Eigen.md @@ -10,8 +10,6 @@ Eigen is a C++ template library for linear algebra: matrices, vectors, numerical version | toolchain --------|---------- -``3.3.9`` | ``GCCcore/11.2.0`` -``3.4.0`` | ``GCCcore/11.2.0`` ``3.4.0`` | ``GCCcore/11.3.0`` ``3.4.0`` | ``GCCcore/12.2.0`` ``3.4.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/e/Emacs.md b/docs/version-specific/supported-software/e/Emacs.md index 49c2d09fdb..a494aaaeb4 100644 --- a/docs/version-specific/supported-software/e/Emacs.md +++ b/docs/version-specific/supported-software/e/Emacs.md @@ -10,10 +10,10 @@ GNU Emacs is an extensible, customizable text editor--and more. At its core is version | toolchain --------|---------- -``27.2`` | ``GCCcore/11.2.0`` ``28.2`` | ``GCCcore/12.2.0`` ``30.1`` | ``GCCcore/12.3.0`` ``30.1`` | ``GCCcore/13.3.0`` +``30.2`` | ``GCCcore/14.2.0`` ``30.2`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/e/Entwine.md b/docs/version-specific/supported-software/e/Entwine.md new file mode 100644 index 0000000000..f91718e2a7 --- /dev/null +++ b/docs/version-specific/supported-software/e/Entwine.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Entwine + +Entwine is a data organization library for massive point clouds, designed to conquer datasets of hundreds of billions of points as well as desktop-scale point clouds. Entwine can index anything that is PDAL-readable, and can read/write to a variety of sources like S3 or Dropbox. Builds are completely lossless, so no points will be discarded even for terabyte-scale datasets. + +*homepage*: + +version | toolchain +--------|---------- +``3.2.1`` | ``foss/2025b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/e/EvidentialGene.md b/docs/version-specific/supported-software/e/EvidentialGene.md index 80125addbc..12be1b71c3 100644 --- a/docs/version-specific/supported-software/e/EvidentialGene.md +++ b/docs/version-specific/supported-software/e/EvidentialGene.md @@ -11,7 +11,6 @@ EvidentialGene is a genome informatics project for "Evidence Directed Gene Cons version | toolchain --------|---------- ``2018.01.01`` | ``gompi/2023a`` -``2022.01.14`` | ``gompi/2021b`` ``2023.07.15`` | ``gompi/2023a`` diff --git a/docs/version-specific/supported-software/e/Eww.md b/docs/version-specific/supported-software/e/Eww.md new file mode 100644 index 0000000000..5e521ef546 --- /dev/null +++ b/docs/version-specific/supported-software/e/Eww.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Eww + +Elkowars Wacky Widgets is a standalone widget system made in Rust that allows you to implement your own, custom widgets in any window manager. + +*homepage*: + +version | toolchain +--------|---------- +``0.6.0`` | ``GCCcore/14.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/e/Exonerate.md b/docs/version-specific/supported-software/e/Exonerate.md index a024a0a065..6fc29f33c1 100644 --- a/docs/version-specific/supported-software/e/Exonerate.md +++ b/docs/version-specific/supported-software/e/Exonerate.md @@ -10,12 +10,12 @@ Exonerate is a generic tool for pairwise sequence comparison. It allows you to version | toolchain --------|---------- -``2.4.0`` | ``GCC/11.2.0`` ``2.4.0`` | ``GCC/11.3.0`` ``2.4.0`` | ``GCC/12.2.0`` ``2.4.0`` | ``GCC/12.3.0`` ``2.4.0`` | ``GCC/13.3.0`` ``2.4.0`` | ``GCC/14.2.0`` +``2.4.0`` | ``GCC/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/ecCodes.md b/docs/version-specific/supported-software/e/ecCodes.md index ee9e01ae22..03a68979c8 100644 --- a/docs/version-specific/supported-software/e/ecCodes.md +++ b/docs/version-specific/supported-software/e/ecCodes.md @@ -10,8 +10,6 @@ ecCodes is a package developed by ECMWF which provides an application programmin version | toolchain --------|---------- -``2.24.2`` | ``gompi/2021b`` -``2.24.2`` | ``iimpi/2021b`` ``2.27.0`` | ``gompi/2022a`` ``2.27.0`` | ``iimpi/2022a`` ``2.31.0`` | ``gompi/2022b`` @@ -23,6 +21,7 @@ version | toolchain ``2.43.0`` | ``gompi/2025b`` ``2.43.0`` | ``iimpi/2025a`` ``2.43.0`` | ``iimpi/2025b`` +``2.43.0`` | ``lompi/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/edlib.md b/docs/version-specific/supported-software/e/edlib.md index e65930ded0..3f3a835b0a 100644 --- a/docs/version-specific/supported-software/e/edlib.md +++ b/docs/version-specific/supported-software/e/edlib.md @@ -10,7 +10,6 @@ Lightweight, super fast library for sequence alignment using edit (Levenshtein) version | toolchain --------|---------- -``1.3.9`` | ``GCC/11.2.0`` ``1.3.9`` | ``GCC/11.3.0`` ``1.3.9`` | ``GCC/12.2.0`` ``1.3.9`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/e/eggnog-mapper.md b/docs/version-specific/supported-software/e/eggnog-mapper.md index 1161e99247..cf3ccce7d0 100644 --- a/docs/version-specific/supported-software/e/eggnog-mapper.md +++ b/docs/version-specific/supported-software/e/eggnog-mapper.md @@ -13,7 +13,6 @@ version | toolchain ``2.1.12`` | ``foss/2023a`` ``2.1.12`` | ``foss/2023b`` ``2.1.12`` | ``foss/2024a`` -``2.1.7`` | ``foss/2021b`` ``2.1.9`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/e/einops.md b/docs/version-specific/supported-software/e/einops.md index bd70f79d40..a711f07da5 100644 --- a/docs/version-specific/supported-software/e/einops.md +++ b/docs/version-specific/supported-software/e/einops.md @@ -15,6 +15,7 @@ version | toolchain ``0.7.0`` | ``GCCcore/12.3.0`` ``0.8.0`` | ``GCCcore/13.2.0`` ``0.8.1`` | ``GCCcore/13.3.0`` +``0.8.1`` | ``GCCcore/14.2.0`` ``0.8.1`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/e/ekg-intervaltree.md b/docs/version-specific/supported-software/e/ekg-intervaltree.md new file mode 100644 index 0000000000..5de3f338c0 --- /dev/null +++ b/docs/version-specific/supported-software/e/ekg-intervaltree.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# ekg-intervaltree + +An interval tree can be used to efficiently find a set of numeric intervals overlapping or containing another interval. This library provides a basic implementation of an interval tree using C++ templates, allowing the insertion of arbitrary types into the tree. + +*homepage*: + +version | toolchain +--------|---------- +``0.1`` | ``GCCcore/13.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/e/elfutils.md b/docs/version-specific/supported-software/e/elfutils.md index cf861f5b0d..6110f262de 100644 --- a/docs/version-specific/supported-software/e/elfutils.md +++ b/docs/version-specific/supported-software/e/elfutils.md @@ -10,7 +10,6 @@ The elfutils project provides libraries and tools for ELF files and DWARF data. version | toolchain --------|---------- -``0.185`` | ``GCCcore/11.2.0`` ``0.187`` | ``GCCcore/11.3.0`` ``0.189`` | ``GCCcore/12.2.0`` ``0.189`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/e/emcee.md b/docs/version-specific/supported-software/e/emcee.md index 979ff7ceee..915a36ae61 100644 --- a/docs/version-specific/supported-software/e/emcee.md +++ b/docs/version-specific/supported-software/e/emcee.md @@ -10,8 +10,8 @@ Emcee is an extensible, pure-Python implementation of Goodman & Weare's Affine I version | toolchain --------|---------- -``3.1.4`` | ``foss/2021b`` ``3.1.4`` | ``foss/2022a`` +``3.1.6`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/enchant-2.md b/docs/version-specific/supported-software/e/enchant-2.md index 09e1e07ff5..3b49cdc580 100644 --- a/docs/version-specific/supported-software/e/enchant-2.md +++ b/docs/version-specific/supported-software/e/enchant-2.md @@ -10,7 +10,6 @@ Enchant aims to provide a simple but comprehensive abstraction for dealing with version | toolchain --------|---------- -``2.3.3`` | ``GCCcore/11.2.0`` ``2.3.3`` | ``GCCcore/11.3.0`` ``2.6.5`` | ``GCCcore/12.3.0`` ``2.8.12`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/e/epiScanpy.md b/docs/version-specific/supported-software/e/epiScanpy.md index 3cd06ea3b2..9fc22180bd 100644 --- a/docs/version-specific/supported-software/e/epiScanpy.md +++ b/docs/version-specific/supported-software/e/epiScanpy.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.4.0`` | ``foss/2022a`` ``0.4.0`` | ``foss/2023a`` +``0.4.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/e/exiv2.md b/docs/version-specific/supported-software/e/exiv2.md index 6d7d030a86..600aa28492 100644 --- a/docs/version-specific/supported-software/e/exiv2.md +++ b/docs/version-specific/supported-software/e/exiv2.md @@ -4,13 +4,12 @@ search: --- # exiv2 -Exiv2 is a Cross-platform C++ library and a command line utility to manage image metadata. +Exiv2 is a C++ library and a command line utility to manage image metadata. It provides fast and easy read and write access to the Exif, IPTC and XMP metadata of digital images in various formats. Exiv2 is available as free software and with a commercial license, and is used in many projects. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.27.5`` | ``GCCcore/11.2.0`` ``0.28.0`` | ``GCCcore/12.3.0`` ``0.28.3`` | ``GCCcore/13.3.0`` ``0.28.5`` | ``GCCcore/14.2.0`` diff --git a/docs/version-specific/supported-software/e/expat.md b/docs/version-specific/supported-software/e/expat.md index f0926331ef..588b3db523 100644 --- a/docs/version-specific/supported-software/e/expat.md +++ b/docs/version-specific/supported-software/e/expat.md @@ -10,7 +10,6 @@ Expat is an XML parser library written in C. It is a stream-oriented parser in version | toolchain --------|---------- -``2.4.1`` | ``GCCcore/11.2.0`` ``2.4.8`` | ``GCCcore/11.3.0`` ``2.4.8`` | ``GCCcore/12.1.0`` ``2.4.9`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/e/expecttest.md b/docs/version-specific/supported-software/e/expecttest.md index cca98f1c0b..5709e6cf69 100644 --- a/docs/version-specific/supported-software/e/expecttest.md +++ b/docs/version-specific/supported-software/e/expecttest.md @@ -10,7 +10,6 @@ This library implements expect tests (also known as "golden" tests). Expect test version | toolchain --------|---------- -``0.1.3`` | ``GCCcore/11.2.0`` ``0.1.3`` | ``GCCcore/11.3.0`` ``0.1.3`` | ``GCCcore/12.2.0`` ``0.1.5`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/e/index.md b/docs/version-specific/supported-software/e/index.md index 730f003736..0bad4c66c9 100644 --- a/docs/version-specific/supported-software/e/index.md +++ b/docs/version-specific/supported-software/e/index.md @@ -15,6 +15,7 @@ search: * [easi](easi.md) * [EasyBuild](EasyBuild.md) * [EasyMocap](EasyMocap.md) + * [EasyOCR](EasyOCR.md) * [EasyPQP](EasyPQP.md) * [ebGSEA](ebGSEA.md) * [EBSeq](EBSeq.md) @@ -33,6 +34,7 @@ search: * [Eigen](Eigen.md) * [EIGENSOFT](EIGENSOFT.md) * [einops](einops.md) + * [ekg-intervaltree](ekg-intervaltree.md) * [elbencho](elbencho.md) * [ELFIO](ELFIO.md) * [elfutils](elfutils.md) @@ -43,7 +45,6 @@ search: * [ELPA](ELPA.md) * [elprep](elprep.md) * [ELSI](ELSI.md) - * [ELSI-RCI](ELSI-RCI.md) * [Emacs](Emacs.md) * [EMBOSS](EMBOSS.md) * [Embree](Embree.md) @@ -56,6 +57,7 @@ search: * [EnergyPlus](EnergyPlus.md) * [ensmallen](ensmallen.md) * [EntrezDirect](EntrezDirect.md) + * [Entwine](Entwine.md) * [EPA-ng](EPA-ng.md) * [epct](epct.md) * [epiScanpy](epiScanpy.md) @@ -82,6 +84,7 @@ search: * [Evo](Evo.md) * [EvoDiff](EvoDiff.md) * [EvtGen](EvtGen.md) + * [Eww](Eww.md) * [Excel-Writer-XLSX](Excel-Writer-XLSX.md) * [exiv2](exiv2.md) * [Exonerate](Exonerate.md) diff --git a/docs/version-specific/supported-software/f/FASTA.md b/docs/version-specific/supported-software/f/FASTA.md index c3a6eb7459..b98df2a2b5 100644 --- a/docs/version-specific/supported-software/f/FASTA.md +++ b/docs/version-specific/supported-software/f/FASTA.md @@ -6,11 +6,10 @@ search: The FASTA programs find regions of local or global (new) similarity between protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. -*homepage*: +*homepage*: version | toolchain --------|---------- -``36.3.8i`` | ``GCC/11.2.0`` ``36.3.8i`` | ``GCC/12.2.0`` ``36.3.8i`` | ``GCC/12.3.0`` ``36.3.8i-may-2023`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/f/FASTX-Toolkit.md b/docs/version-specific/supported-software/f/FASTX-Toolkit.md index 7d336fad9d..65d98ad90d 100644 --- a/docs/version-specific/supported-software/f/FASTX-Toolkit.md +++ b/docs/version-specific/supported-software/f/FASTX-Toolkit.md @@ -10,8 +10,8 @@ The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/F version | toolchain --------|---------- -``0.0.14`` | ``GCC/11.2.0`` ``0.0.14`` | ``GCC/11.3.0`` +``0.0.14`` | ``GCC/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FDS.md b/docs/version-specific/supported-software/f/FDS.md index 2c996c2be2..c4fbaf4505 100644 --- a/docs/version-specific/supported-software/f/FDS.md +++ b/docs/version-specific/supported-software/f/FDS.md @@ -11,7 +11,6 @@ Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-spee version | toolchain --------|---------- ``6.10.1`` | ``intel/2025a`` -``6.7.7`` | ``intel/2021b`` ``6.7.9`` | ``intel/2022a`` ``6.8.0`` | ``intel/2022b`` ``6.8.0`` | ``iomkl/2022b`` diff --git a/docs/version-specific/supported-software/f/FFTW.MPI.md b/docs/version-specific/supported-software/f/FFTW.MPI.md index d09d9550a4..086c1beed3 100644 --- a/docs/version-specific/supported-software/f/FFTW.MPI.md +++ b/docs/version-specific/supported-software/f/FFTW.MPI.md @@ -22,10 +22,12 @@ version | toolchain ``3.3.10`` | ``gompi/2024a`` ``3.3.10`` | ``gompi/2025a`` ``3.3.10`` | ``gompi/2025b`` +``3.3.10`` | ``gompi/2026.1`` ``3.3.10`` | ``iimpi/2023a`` ``3.3.10`` | ``iimpi/2025b`` ``3.3.10`` | ``lmpich/2025b`` ``3.3.10`` | ``lompi/2025b`` +``3.3.10`` | ``lompi/2026.1`` ``3.3.10`` | ``nvompi/2022.07`` diff --git a/docs/version-specific/supported-software/f/FFTW.md b/docs/version-specific/supported-software/f/FFTW.md index 07b4b54890..8b42bc5647 100644 --- a/docs/version-specific/supported-software/f/FFTW.md +++ b/docs/version-specific/supported-software/f/FFTW.md @@ -17,15 +17,16 @@ version | toolchain ``3.3.10`` | ``GCC/13.3.0`` ``3.3.10`` | ``GCC/14.2.0`` ``3.3.10`` | ``GCC/14.3.0`` +``3.3.10`` | ``GCC/15.2.0`` ``3.3.10`` | ``NVHPC/22.7-CUDA-11.7.0`` ``3.3.10`` | ``NVHPC/25.1`` -``3.3.10`` | ``gompi/2021b`` -``3.3.10`` | ``iimpi/2021b`` +``3.3.10`` | ``NVHPC/25.3-CUDA-12.8.0`` ``3.3.10`` | ``iimpi/2022a`` ``3.3.10`` | ``iimpi/2022b`` ``3.3.10`` | ``intel-compilers/2023.1.0`` ``3.3.10`` | ``intel-compilers/2025.2.0`` ``3.3.10`` | ``llvm-compilers/20.1.8`` +``3.3.10`` | ``llvm-compilers/21.1.8`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FFmpeg.md b/docs/version-specific/supported-software/f/FFmpeg.md index 073cea0c67..1f7d0bfd32 100644 --- a/docs/version-specific/supported-software/f/FFmpeg.md +++ b/docs/version-specific/supported-software/f/FFmpeg.md @@ -10,7 +10,6 @@ A complete, cross-platform solution to record, convert and stream audio and vide version | toolchain --------|---------- -``4.3.2`` | ``GCCcore/11.2.0`` ``4.4.2`` | ``GCCcore/11.3.0`` ``5.0.1`` | ``GCCcore/11.3.0`` ``5.1.2`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/f/FLAC.md b/docs/version-specific/supported-software/f/FLAC.md index 18ccc6ccd3..cb7e11e18c 100644 --- a/docs/version-specific/supported-software/f/FLAC.md +++ b/docs/version-specific/supported-software/f/FLAC.md @@ -10,7 +10,6 @@ FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but l version | toolchain --------|---------- -``1.3.3`` | ``GCCcore/11.2.0`` ``1.3.4`` | ``GCCcore/11.3.0`` ``1.4.2`` | ``GCCcore/12.2.0`` ``1.4.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/FLANN.md b/docs/version-specific/supported-software/f/FLANN.md index 6eba20be5d..8cb7598781 100644 --- a/docs/version-specific/supported-software/f/FLANN.md +++ b/docs/version-specific/supported-software/f/FLANN.md @@ -12,7 +12,9 @@ version | toolchain --------|---------- ``1.9.2`` | ``foss/2022b`` ``1.9.2`` | ``foss/2023a`` +``1.9.2`` | ``foss/2023b`` ``1.9.2`` | ``foss/2024a`` +``1.9.2`` | ``foss/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FLASH.md b/docs/version-specific/supported-software/f/FLASH.md index 20e9d15966..97769ed6b7 100644 --- a/docs/version-specific/supported-software/f/FLASH.md +++ b/docs/version-specific/supported-software/f/FLASH.md @@ -10,7 +10,6 @@ FLASH (Fast Length Adjustment of SHort reads) is a very fast and accurate softwa version | toolchain --------|---------- -``2.2.00`` | ``GCC/11.2.0`` ``2.2.00`` | ``GCCcore/12.2.0`` ``2.2.00`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/f/FLINT.md b/docs/version-specific/supported-software/f/FLINT.md index c4bf5dfed0..b55344eb5f 100644 --- a/docs/version-specific/supported-software/f/FLINT.md +++ b/docs/version-specific/supported-software/f/FLINT.md @@ -10,7 +10,6 @@ FLINT (Fast Library for Number Theory) is a C library in support of computations version | toolchain --------|---------- -``2.8.4`` | ``foss/2021b`` ``2.9.0`` | ``gfbf/2022a`` ``2.9.0`` | ``gfbf/2022b`` ``3.1.1`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/f/FLTK.md b/docs/version-specific/supported-software/f/FLTK.md index 2641542f18..c228f1b996 100644 --- a/docs/version-specific/supported-software/f/FLTK.md +++ b/docs/version-specific/supported-software/f/FLTK.md @@ -10,7 +10,6 @@ FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows version | toolchain --------|---------- -``1.3.7`` | ``GCCcore/11.2.0`` ``1.3.8`` | ``GCCcore/11.3.0`` ``1.3.8`` | ``GCCcore/12.2.0`` ``1.3.8`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/FLUENT.md b/docs/version-specific/supported-software/f/FLUENT.md index d298cd1904..19440198f2 100644 --- a/docs/version-specific/supported-software/f/FLUENT.md +++ b/docs/version-specific/supported-software/f/FLUENT.md @@ -10,7 +10,6 @@ ANSYS FLUENT software contains the broad physical modeling capabilities needed t version | toolchain --------|---------- -``2021R1`` | ``system`` ``2021R2`` | ``system`` ``2024R1`` | ``system`` diff --git a/docs/version-specific/supported-software/f/FOX-Toolkit.md b/docs/version-specific/supported-software/f/FOX-Toolkit.md index ea8b86d1fc..f251acec46 100644 --- a/docs/version-specific/supported-software/f/FOX-Toolkit.md +++ b/docs/version-specific/supported-software/f/FOX-Toolkit.md @@ -10,7 +10,6 @@ FOX is a C++ based Toolkit for developing Graphical User Interfaces easily and e version | toolchain --------|---------- -``1.6.57`` | ``GCCcore/11.2.0`` ``1.6.58`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/FSL.md b/docs/version-specific/supported-software/f/FSL.md new file mode 100644 index 0000000000..74573da9f4 --- /dev/null +++ b/docs/version-specific/supported-software/f/FSL.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# FSL + +FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. + +*homepage*: + +version | toolchain +--------|---------- +``6.0.7.11`` | ``system`` +``6.0.7.17`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/f/FabIO.md b/docs/version-specific/supported-software/f/FabIO.md deleted file mode 100644 index daf0272903..0000000000 --- a/docs/version-specific/supported-software/f/FabIO.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FabIO - -FabIO is an I/O library for images produced by 2D X-ray detectors and written in Python. FabIO support images detectors from a dozen of companies (including Mar, Dectris, ADSC, Hamamatsu, Oxford, ...), for a total of 20 different file formats (like CBF, EDF, TIFF, ...) and offers an unified interface to their headers (as a python dictionary) and datasets (as a numpy ndarray of integers or floats). - -*homepage*: - -version | toolchain ---------|---------- -``0.14.0`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/Faiss.md b/docs/version-specific/supported-software/f/Faiss.md index f629f6d10a..d90d661e1e 100644 --- a/docs/version-specific/supported-software/f/Faiss.md +++ b/docs/version-specific/supported-software/f/Faiss.md @@ -10,6 +10,8 @@ Faiss is a library for efficient similarity search and clustering of dense vect version | versionsuffix | toolchain --------|---------------|---------- +``1.13.2`` | ``-CUDA-12.6.0`` | ``foss/2024a`` +``1.13.2`` | | ``foss/2024a`` ``1.7.4`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``1.7.4`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/f/FastANI.md b/docs/version-specific/supported-software/f/FastANI.md index c44e4a0993..82af5bc76b 100644 --- a/docs/version-specific/supported-software/f/FastANI.md +++ b/docs/version-specific/supported-software/f/FastANI.md @@ -10,9 +10,7 @@ FastANI is developed for fast alignment-free computation of whole-genome Averag version | toolchain --------|---------- -``1.33`` | ``GCC/11.2.0`` ``1.33`` | ``GCC/11.3.0`` -``1.33`` | ``intel-compilers/2021.4.0`` ``1.34`` | ``GCC/12.3.0`` ``1.34`` | ``GCC/13.2.0`` ``1.34`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/f/FastME.md b/docs/version-specific/supported-software/f/FastME.md index fcc9f4b36e..bf0f1ee902 100644 --- a/docs/version-specific/supported-software/f/FastME.md +++ b/docs/version-specific/supported-software/f/FastME.md @@ -16,6 +16,7 @@ version | toolchain ``2.1.6.3`` | ``GCC/13.3.0`` ``2.1.6.3`` | ``GCC/14.2.0`` ``2.1.6.4`` | ``GCC/14.2.0`` +``2.1.6.4`` | ``GCC/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FastTree.md b/docs/version-specific/supported-software/f/FastTree.md index b25418ff89..18d7f176a4 100644 --- a/docs/version-specific/supported-software/f/FastTree.md +++ b/docs/version-specific/supported-software/f/FastTree.md @@ -10,12 +10,12 @@ FastTree infers approximately-maximum-likelihood phylogenetic trees from alignme version | toolchain --------|---------- -``2.1.11`` | ``GCCcore/11.2.0`` ``2.1.11`` | ``GCCcore/11.3.0`` ``2.1.11`` | ``GCCcore/12.2.0`` ``2.1.11`` | ``GCCcore/12.3.0`` ``2.1.11`` | ``GCCcore/13.2.0`` ``2.2`` | ``GCCcore/13.3.0`` +``2.2`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/Filtlong.md b/docs/version-specific/supported-software/f/Filtlong.md index 3e81e9bf38..7c0c18bd8a 100644 --- a/docs/version-specific/supported-software/f/Filtlong.md +++ b/docs/version-specific/supported-software/f/Filtlong.md @@ -11,6 +11,7 @@ Filtlong is a tool for filtering long reads by quality. It can take a set of lo version | toolchain --------|---------- ``0.2.1`` | ``GCC/12.3.0`` +``0.3.1`` | ``GCC/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/Fiona.md b/docs/version-specific/supported-software/f/Fiona.md index 74abd62809..c097e16bd7 100644 --- a/docs/version-specific/supported-software/f/Fiona.md +++ b/docs/version-specific/supported-software/f/Fiona.md @@ -14,7 +14,6 @@ version | toolchain ``1.10.1`` | ``foss/2024a`` ``1.10.1`` | ``foss/2025a`` ``1.10.1`` | ``foss/2025b`` -``1.8.21`` | ``foss/2021b`` ``1.8.21`` | ``foss/2022a`` ``1.9.2`` | ``foss/2022b`` ``1.9.5`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/f/Flask.md b/docs/version-specific/supported-software/f/Flask.md index e3d2692e6a..fd31a0ed70 100644 --- a/docs/version-specific/supported-software/f/Flask.md +++ b/docs/version-specific/supported-software/f/Flask.md @@ -10,7 +10,6 @@ Flask is a lightweight WSGI web application framework. It is designed to make ge version | toolchain --------|---------- -``2.0.2`` | ``GCCcore/11.2.0`` ``2.2.2`` | ``GCCcore/11.3.0`` ``2.2.3`` | ``GCCcore/12.2.0`` ``2.3.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/FlexiBLAS.md b/docs/version-specific/supported-software/f/FlexiBLAS.md index cd0b78f358..cc45e1ebd4 100644 --- a/docs/version-specific/supported-software/f/FlexiBLAS.md +++ b/docs/version-specific/supported-software/f/FlexiBLAS.md @@ -10,8 +10,6 @@ FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK version | toolchain --------|---------- -``3.0.4`` | ``GCC/11.2.0`` -``3.1.3`` | ``GCC/11.2.0`` ``3.2.0`` | ``GCC/11.3.0`` ``3.2.0`` | ``NVHPC/22.7-CUDA-11.7.0`` ``3.2.1`` | ``GCC/12.2.0`` @@ -22,6 +20,7 @@ version | toolchain ``3.4.5`` | ``GCC/14.3.0`` ``3.4.5`` | ``llvm-compilers/20.1.8`` ``3.5.0`` | ``GCC/15.2.0`` +``3.5.0`` | ``llvm-compilers/21.1.8`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/Flye.md b/docs/version-specific/supported-software/f/Flye.md index 4e77b4c797..8ee6ef492b 100644 --- a/docs/version-specific/supported-software/f/Flye.md +++ b/docs/version-specific/supported-software/f/Flye.md @@ -10,7 +10,6 @@ Flye is a de novo assembler for long and noisy reads, such as those produced by version | toolchain --------|---------- -``2.9.1`` | ``GCC/11.2.0`` ``2.9.2`` | ``GCC/11.3.0`` ``2.9.3`` | ``GCC/12.3.0`` ``2.9.4`` | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/f/FoX.md b/docs/version-specific/supported-software/f/FoX.md index 6280fb97fd..e4dbed9aad 100644 --- a/docs/version-specific/supported-software/f/FoX.md +++ b/docs/version-specific/supported-software/f/FoX.md @@ -10,7 +10,7 @@ FoX is an XML library written in Fortran 95. It allows software developers to re version | toolchain --------|---------- -``4.1.2`` | ``GCC/11.2.0`` +``4.1.2`` | ``intel-compilers/2025.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FragGeneScan.md b/docs/version-specific/supported-software/f/FragGeneScan.md index b2b6a4505b..02edcff723 100644 --- a/docs/version-specific/supported-software/f/FragGeneScan.md +++ b/docs/version-specific/supported-software/f/FragGeneScan.md @@ -10,7 +10,6 @@ FragGeneScan is an application for finding (fragmented) genes in short reads. version | toolchain --------|---------- -``1.31`` | ``GCCcore/11.2.0`` ``1.31`` | ``GCCcore/11.3.0`` ``1.31`` | ``GCCcore/12.3.0`` ``1.32`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/f/FreeBarcodes.md b/docs/version-specific/supported-software/f/FreeBarcodes.md deleted file mode 100644 index 46228214e0..0000000000 --- a/docs/version-specific/supported-software/f/FreeBarcodes.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# FreeBarcodes - -A package for the generation and decoding of FREE divergence error-correcting DNA barcodes - -*homepage*: - -version | toolchain ---------|---------- -``3.0.a5`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/FreeImage.md b/docs/version-specific/supported-software/f/FreeImage.md index 902742890f..16293afd9d 100644 --- a/docs/version-specific/supported-software/f/FreeImage.md +++ b/docs/version-specific/supported-software/f/FreeImage.md @@ -10,7 +10,6 @@ FreeImage is an Open Source library project for developers who would like to sup version | toolchain --------|---------- -``3.18.0`` | ``GCCcore/11.2.0`` ``3.18.0`` | ``GCCcore/11.3.0`` ``3.18.0`` | ``GCCcore/12.2.0`` ``3.18.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/FreeSurfer.md b/docs/version-specific/supported-software/f/FreeSurfer.md index 6ad3740094..9efd6addbc 100644 --- a/docs/version-specific/supported-software/f/FreeSurfer.md +++ b/docs/version-specific/supported-software/f/FreeSurfer.md @@ -10,9 +10,6 @@ FreeSurfer is a set of tools for analysis and visualization of structural and fu version | versionsuffix | toolchain --------|---------------|---------- -``7.1.1`` | ``-centos6_x86_64`` | ``system`` -``7.1.1`` | ``-centos7_x86_64`` | ``system`` -``7.1.1`` | ``-centos8_x86_64`` | ``system`` ``7.2.0`` | ``-centos7_x86_64`` | ``system`` ``7.2.0`` | ``-centos8_x86_64`` | ``system`` ``7.2.0`` | ``-ubuntu18_amd64`` | ``system`` diff --git a/docs/version-specific/supported-software/f/FreeXL.md b/docs/version-specific/supported-software/f/FreeXL.md index 9604b40d33..91f1109ae4 100644 --- a/docs/version-specific/supported-software/f/FreeXL.md +++ b/docs/version-specific/supported-software/f/FreeXL.md @@ -10,8 +10,10 @@ FreeXL is an open source library to extract valid data from within an Excel (.xl version | toolchain --------|---------- -``1.0.6`` | ``GCCcore/11.2.0`` ``2.0.0`` | ``GCCcore/12.3.0`` +``2.0.0`` | ``GCCcore/13.3.0`` +``2.0.0`` | ``GCCcore/14.2.0`` +``2.0.0`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/FriBidi.md b/docs/version-specific/supported-software/f/FriBidi.md index d2b3e71ba1..064e9865dd 100644 --- a/docs/version-specific/supported-software/f/FriBidi.md +++ b/docs/version-specific/supported-software/f/FriBidi.md @@ -10,7 +10,6 @@ The Free Implementation of the Unicode Bidirectional Algorithm. version | toolchain --------|---------- -``1.0.10`` | ``GCCcore/11.2.0`` ``1.0.12`` | ``GCCcore/11.3.0`` ``1.0.12`` | ``GCCcore/12.2.0`` ``1.0.12`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/fMRIPrep.md b/docs/version-specific/supported-software/f/fMRIPrep.md new file mode 100644 index 0000000000..eb9d6b3c06 --- /dev/null +++ b/docs/version-specific/supported-software/f/fMRIPrep.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# fMRIPrep + +fMRIPrep is an analysis-agnostic tool that addresses the challenge of robust and reproducible preprocessing for task-based and resting fMRI data. fMRIPrep automatically adapts a best-in-breed workflow to the idiosyncrasies of virtually any dataset, ensuring high-quality preprocessing without manual intervention. fMRIPrep robustly produces high-quality results on diverse fMRI data. Additionally, fMRIPrep introduces less uncontrolled spatial smoothness than observed with commonly used preprocessing tools. fMRIPrep equips neuroscientists with an easy-to-use and transparent preprocessing workflow, which can help ensure the validity of inference and the interpretability of results. + +*homepage*: + +version | toolchain +--------|---------- +``25.0.0`` | ``foss/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/f/fastahack.md b/docs/version-specific/supported-software/f/fastahack.md index a644cd7ed8..ec36da3503 100644 --- a/docs/version-specific/supported-software/f/fastahack.md +++ b/docs/version-specific/supported-software/f/fastahack.md @@ -10,7 +10,6 @@ Utilities for indexing and sequence extraction from FASTA files. version | toolchain --------|---------- -``1.0.0`` | ``GCCcore/11.2.0`` ``1.0.0`` | ``GCCcore/11.3.0`` ``1.0.0`` | ``GCCcore/12.2.0`` ``1.0.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/a/ARGoS.md b/docs/version-specific/supported-software/f/fastobo.md similarity index 81% rename from docs/version-specific/supported-software/a/ARGoS.md rename to docs/version-specific/supported-software/f/fastobo.md index 87dd3fa57f..6e3c755a24 100644 --- a/docs/version-specific/supported-software/a/ARGoS.md +++ b/docs/version-specific/supported-software/f/fastobo.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# ARGoS +# fastobo -A parallel, multi-engine simulator for heterogeneous swarm robotics +Faultless AST for Open Biomedical Ontologies in Python. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.0.0-beta59`` | ``GCC/11.2.0`` +``0.14.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fastp.md b/docs/version-specific/supported-software/f/fastp.md index e6b59ca3bd..4078f9ab58 100644 --- a/docs/version-specific/supported-software/f/fastp.md +++ b/docs/version-specific/supported-software/f/fastp.md @@ -10,12 +10,12 @@ A tool designed to provide fast all-in-one preprocessing for FastQ files. This version | toolchain --------|---------- -``0.23.2`` | ``GCC/11.2.0`` ``0.23.2`` | ``GCC/11.3.0`` ``0.23.4`` | ``GCC/12.2.0`` ``0.23.4`` | ``GCC/12.3.0`` ``0.23.4`` | ``GCC/13.2.0`` ``1.0.1`` | ``GCC/13.3.0`` +``1.1.0`` | ``GCC/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fastparquet.md b/docs/version-specific/supported-software/f/fastparquet.md index 55decbe0f5..9b60518191 100644 --- a/docs/version-specific/supported-software/f/fastparquet.md +++ b/docs/version-specific/supported-software/f/fastparquet.md @@ -10,9 +10,9 @@ fastparquet is a python implementation of the parquet format, aiming to integrat version | toolchain --------|---------- -``0.8.0`` | ``foss/2021b`` ``2023.4.0`` | ``gfbf/2022b`` ``2024.11.0`` | ``gfbf/2023a`` +``2026.3.0`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/fastq-tools.md b/docs/version-specific/supported-software/f/fastq-tools.md deleted file mode 100644 index 2d62a57344..0000000000 --- a/docs/version-specific/supported-software/f/fastq-tools.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fastq-tools - -This package provides a number of small and efficient programs to perform common tasks with high throughput sequencing data in the FASTQ format. All of the programs work with typical FASTQ files as well as gzipped FASTQ files. - -*homepage*: - -version | toolchain ---------|---------- -``0.8.3`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fdict.md b/docs/version-specific/supported-software/f/fdict.md deleted file mode 100644 index e4a98c6e7e..0000000000 --- a/docs/version-specific/supported-software/f/fdict.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fdict - -A variable and dictionary in pure fortran for retaining any data-type and a fast hash-table dictionary. - -*homepage*: - -version | toolchain ---------|---------- -``0.8.0`` | ``GCC/11.2.0`` -``0.8.0`` | ``intel-compilers/2021.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fermi-lite.md b/docs/version-specific/supported-software/f/fermi-lite.md index 286172aa77..9f6b35f929 100644 --- a/docs/version-specific/supported-software/f/fermi-lite.md +++ b/docs/version-specific/supported-software/f/fermi-lite.md @@ -10,10 +10,10 @@ Standalone C library for assembling Illumina short reads in small regions. version | toolchain --------|---------- -``20190320`` | ``GCCcore/11.2.0`` ``20190320`` | ``GCCcore/12.3.0`` ``20190320`` | ``GCCcore/13.2.0`` ``20190320`` | ``GCCcore/13.3.0`` +``20190320`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/file.md b/docs/version-specific/supported-software/f/file.md index b2a9dc3676..f006bda761 100644 --- a/docs/version-specific/supported-software/f/file.md +++ b/docs/version-specific/supported-software/f/file.md @@ -10,7 +10,6 @@ The file command is 'a file type guesser', that is, a command-line tool that te version | toolchain --------|---------- -``5.41`` | ``GCCcore/11.2.0`` ``5.43`` | ``GCCcore/11.3.0`` ``5.43`` | ``GCCcore/12.2.0`` ``5.43`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/filevercmp.md b/docs/version-specific/supported-software/f/filevercmp.md index 6c495eda8e..6eec0dd97f 100644 --- a/docs/version-specific/supported-software/f/filevercmp.md +++ b/docs/version-specific/supported-software/f/filevercmp.md @@ -10,7 +10,6 @@ filevercmp function as in sort --version-sort. version | toolchain --------|---------- -``20191210`` | ``GCCcore/11.2.0`` ``20191210`` | ``GCCcore/11.3.0`` ``20191210`` | ``GCCcore/12.2.0`` ``20191210`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/finder.md b/docs/version-specific/supported-software/f/finder.md deleted file mode 100644 index 9dd27f5291..0000000000 --- a/docs/version-specific/supported-software/f/finder.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# finder - -finder is a gene annotator pipeline which automates the process of downloading short reads, aligning them and using the assembled transcripts to generate gene annotations. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.0`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/fio.md b/docs/version-specific/supported-software/f/fio.md index 37b36f7d7b..1edc48dcb7 100644 --- a/docs/version-specific/supported-software/f/fio.md +++ b/docs/version-specific/supported-software/f/fio.md @@ -13,7 +13,10 @@ version | toolchain ``3.32`` | ``GCCcore/11.3.0`` ``3.34`` | ``GCCcore/12.2.0`` ``3.36`` | ``GCCcore/12.3.0`` +``3.38`` | ``GCCcore/13.2.0`` +``3.38`` | ``GCCcore/13.3.0`` ``3.38`` | ``GCCcore/14.2.0`` +``3.41`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/flatbuffers-python.md b/docs/version-specific/supported-software/f/flatbuffers-python.md index 693cdee773..0cf600ae2b 100644 --- a/docs/version-specific/supported-software/f/flatbuffers-python.md +++ b/docs/version-specific/supported-software/f/flatbuffers-python.md @@ -10,7 +10,6 @@ Python Flatbuffers runtime library. version | toolchain --------|---------- -``2.0`` | ``GCCcore/11.2.0`` ``2.0`` | ``GCCcore/11.3.0`` ``23.1.4`` | ``GCCcore/12.2.0`` ``23.5.26`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/flatbuffers.md b/docs/version-specific/supported-software/f/flatbuffers.md index 2df2ac0f38..cc1a0ac6ef 100644 --- a/docs/version-specific/supported-software/f/flatbuffers.md +++ b/docs/version-specific/supported-software/f/flatbuffers.md @@ -10,7 +10,6 @@ FlatBuffers: Memory Efficient Serialization Library version | toolchain --------|---------- -``2.0.0`` | ``GCCcore/11.2.0`` ``2.0.0`` | ``GCCcore/11.3.0`` ``2.0.7`` | ``GCCcore/11.3.0`` ``23.1.4`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/f/flex.md b/docs/version-specific/supported-software/f/flex.md index ffb9ac9c99..2989812676 100644 --- a/docs/version-specific/supported-software/f/flex.md +++ b/docs/version-specific/supported-software/f/flex.md @@ -10,7 +10,6 @@ Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, some version | toolchain --------|---------- -``2.6.4`` | ``GCCcore/11.2.0`` ``2.6.4`` | ``GCCcore/11.3.0`` ``2.6.4`` | ``GCCcore/11.4.0`` ``2.6.4`` | ``GCCcore/12.1.0`` diff --git a/docs/version-specific/supported-software/f/flook.md b/docs/version-specific/supported-software/f/flook.md index 651f7fc765..ea3babfba2 100644 --- a/docs/version-specific/supported-software/f/flook.md +++ b/docs/version-specific/supported-software/f/flook.md @@ -10,9 +10,7 @@ The fortran-Lua-hook library. version | toolchain --------|---------- -``0.8.1`` | ``GCC/11.2.0`` ``0.8.1`` | ``GCC/11.3.0`` -``0.8.1`` | ``intel-compilers/2021.4.0`` ``0.8.4`` | ``GCC/12.3.0`` ``0.8.4`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/f/fmt.md b/docs/version-specific/supported-software/f/fmt.md index 5b921e001d..f00be6a29f 100644 --- a/docs/version-specific/supported-software/f/fmt.md +++ b/docs/version-specific/supported-software/f/fmt.md @@ -18,8 +18,6 @@ version | toolchain ``11.2.0`` | ``GCCcore/13.3.0`` ``11.2.0`` | ``GCCcore/14.2.0`` ``11.2.0`` | ``GCCcore/14.3.0`` -``7.1.1`` | ``GCCcore/11.2.0`` -``8.1.1`` | ``GCCcore/11.2.0`` ``9.1.0`` | ``GCCcore/11.3.0`` ``9.1.0`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/f/fontconfig.md b/docs/version-specific/supported-software/f/fontconfig.md index 708e27c7e9..bca2347a48 100644 --- a/docs/version-specific/supported-software/f/fontconfig.md +++ b/docs/version-specific/supported-software/f/fontconfig.md @@ -10,7 +10,6 @@ Fontconfig is a library designed to provide system-wide font configuration, cus version | toolchain --------|---------- -``2.13.94`` | ``GCCcore/11.2.0`` ``2.14.0`` | ``GCCcore/11.3.0`` ``2.14.1`` | ``GCCcore/12.2.0`` ``2.14.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/foss.md b/docs/version-specific/supported-software/f/foss.md index f5549380ea..1104d0eb51 100644 --- a/docs/version-specific/supported-software/f/foss.md +++ b/docs/version-specific/supported-software/f/foss.md @@ -10,7 +10,6 @@ GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for M version | toolchain --------|---------- -``2021b`` | ``system`` ``2022.05`` | ``system`` ``2022.10`` | ``system`` ``2022a`` | ``system`` @@ -22,6 +21,7 @@ version | toolchain ``2024a`` | ``system`` ``2025a`` | ``system`` ``2025b`` | ``system`` +``2026.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/freebayes.md b/docs/version-specific/supported-software/f/freebayes.md index a3d0feaea9..6c0149e988 100644 --- a/docs/version-specific/supported-software/f/freebayes.md +++ b/docs/version-specific/supported-software/f/freebayes.md @@ -10,8 +10,8 @@ Bayesian haplotype-based genetic polymorphism discovery and genotyping. version | versionsuffix | toolchain --------|---------------|---------- -``1.3.6`` | ``-R-4.1.2`` | ``foss/2021b`` ``1.3.7`` | ``-R-4.3.2`` | ``gfbf/2023a`` +``1.3.7`` | ``-R-4.4.2`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/freeglut.md b/docs/version-specific/supported-software/f/freeglut.md index fb651b809a..1bfddb56a7 100644 --- a/docs/version-specific/supported-software/f/freeglut.md +++ b/docs/version-specific/supported-software/f/freeglut.md @@ -10,7 +10,6 @@ freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit ( version | toolchain --------|---------- -``3.2.1`` | ``GCCcore/11.2.0`` ``3.2.2`` | ``GCCcore/11.3.0`` ``3.4.0`` | ``GCCcore/12.2.0`` ``3.4.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/freetype.md b/docs/version-specific/supported-software/f/freetype.md index f2df14df2b..87a6dda3ee 100644 --- a/docs/version-specific/supported-software/f/freetype.md +++ b/docs/version-specific/supported-software/f/freetype.md @@ -10,7 +10,6 @@ FreeType 2 is a software font engine that is designed to be small, efficient, h version | toolchain --------|---------- -``2.11.0`` | ``GCCcore/11.2.0`` ``2.12.1`` | ``GCCcore/11.3.0`` ``2.12.1`` | ``GCCcore/12.2.0`` ``2.13.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/fsom.md b/docs/version-specific/supported-software/f/fsom.md index ad88b3dd71..9a87457e32 100644 --- a/docs/version-specific/supported-software/f/fsom.md +++ b/docs/version-specific/supported-software/f/fsom.md @@ -10,7 +10,6 @@ A tiny C library for managing SOM (Self-Organizing Maps) neural networks. version | toolchain --------|---------- -``20141119`` | ``GCCcore/11.2.0`` ``20151117`` | ``GCCcore/11.3.0`` ``20151117`` | ``GCCcore/12.2.0`` ``20151117`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/f/fumi_tools.md b/docs/version-specific/supported-software/f/fumi_tools.md deleted file mode 100644 index bf373491ff..0000000000 --- a/docs/version-specific/supported-software/f/fumi_tools.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# fumi_tools - -This tool is intended to deduplicate UMIs from single-end and paired-end sequencing data. Reads are considered identical when their UMIs have the same sequence, they have the same length and map at the same position. - -*homepage*: - -version | toolchain ---------|---------- -``0.18.2`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/f/funannotate.md b/docs/version-specific/supported-software/f/funannotate.md index 5ff03ade5e..1ff0d8b397 100644 --- a/docs/version-specific/supported-software/f/funannotate.md +++ b/docs/version-specific/supported-software/f/funannotate.md @@ -10,7 +10,6 @@ funannotate is a pipeline for genome annotation (built specifically for fungi, b version | toolchain --------|---------- -``1.8.13`` | ``foss/2021b`` ``1.8.17`` | ``foss/2023a`` ``1.8.17`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/f/futile.md b/docs/version-specific/supported-software/f/futile.md index 9374f68f99..21bc09351b 100644 --- a/docs/version-specific/supported-software/f/futile.md +++ b/docs/version-specific/supported-software/f/futile.md @@ -10,9 +10,7 @@ The FUTILE project (Fortran Utilities for the Treatment of Innermost Level of Ex version | toolchain --------|---------- -``1.8.3`` | ``foss/2021b`` ``1.8.3`` | ``foss/2022a`` -``1.8.3`` | ``intel/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/f/index.md b/docs/version-specific/supported-software/f/index.md index ce6f11a423..5122ac8d78 100644 --- a/docs/version-specific/supported-software/f/index.md +++ b/docs/version-specific/supported-software/f/index.md @@ -11,7 +11,6 @@ search: * [f90nml](f90nml.md) * [f90wrap](f90wrap.md) * [FAAD2](FAAD2.md) - * [FabIO](FabIO.md) * [face-recognition](face-recognition.md) * [Faiss](Faiss.md) * [FALL3D](FALL3D.md) @@ -28,18 +27,16 @@ search: * [FastK](FastK.md) * [FastME](FastME.md) * [fastml](fastml.md) + * [fastobo](fastobo.md) * [fastp](fastp.md) * [fastparquet](fastparquet.md) - * [fastq-tools](fastq-tools.md) * [FastQ_Screen](FastQ_Screen.md) * [FastQC](FastQC.md) - * [FastQTL](FastQTL.md) * [fastStructure](fastStructure.md) * [fastText](fastText.md) * [FastTree](FastTree.md) * [FASTX-Toolkit](FASTX-Toolkit.md) * [FCM](FCM.md) - * [fdict](fdict.md) * [FDMNES](FDMNES.md) * [FDS](FDS.md) * [FEBio](FEBio.md) @@ -69,7 +66,6 @@ search: * [filecheck-python](filecheck-python.md) * [filevercmp](filevercmp.md) * [Filtlong](Filtlong.md) - * [finder](finder.md) * [fineRADstructure](fineRADstructure.md) * [fineSTRUCTURE](fineSTRUCTURE.md) * [fio](fio.md) @@ -98,6 +94,7 @@ search: * [Fluxbox](Fluxbox.md) * [Flye](Flye.md) * [FMM3D](FMM3D.md) + * [fMRIPrep](fMRIPrep.md) * [FMS](FMS.md) * [fmt](fmt.md) * [fontconfig](fontconfig.md) @@ -113,7 +110,6 @@ search: * [fpylll](fpylll.md) * [FragGeneScan](FragGeneScan.md) * [FragPipe](FragPipe.md) - * [FreeBarcodes](FreeBarcodes.md) * [freebayes](freebayes.md) * [freeglut](freeglut.md) * [FreeImage](FreeImage.md) @@ -122,12 +118,12 @@ search: * [freetype-py](freetype-py.md) * [FreeXL](FreeXL.md) * [FriBidi](FriBidi.md) + * [FSL](FSL.md) * [fsm-lite](fsm-lite.md) * [fsom](fsom.md) * [ftfy](ftfy.md) * [FTGL](FTGL.md) * [fugue](fugue.md) - * [fumi_tools](fumi_tools.md) * [FUNAERO](FUNAERO.md) * [funannotate](funannotate.md) * [FunGAP](FunGAP.md) diff --git a/docs/version-specific/supported-software/g/GAPPadder.md b/docs/version-specific/supported-software/g/GAPPadder.md deleted file mode 100644 index 50cc3ef1a7..0000000000 --- a/docs/version-specific/supported-software/g/GAPPadder.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GAPPadder - -GAPPadder is tool for closing gaps on draft genomes with short sequencing data - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20170601`` | ``-Python-2.7.18`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GATE.md b/docs/version-specific/supported-software/g/GATE.md index ef8014081c..745d571371 100644 --- a/docs/version-specific/supported-software/g/GATE.md +++ b/docs/version-specific/supported-software/g/GATE.md @@ -11,8 +11,6 @@ GATE is an advanced opensource software developed by the international OpenGATE version | toolchain --------|---------- ``10.0.2`` | ``foss/2023b`` -``9.1`` | ``foss/2021b`` -``9.2`` | ``foss/2021b`` ``9.2`` | ``foss/2022a`` ``9.4`` | ``foss/2023a`` ``9.4.1`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/g/GATK.md b/docs/version-specific/supported-software/g/GATK.md index 344a47c1aa..881a4804f1 100644 --- a/docs/version-specific/supported-software/g/GATK.md +++ b/docs/version-specific/supported-software/g/GATK.md @@ -10,9 +10,6 @@ The Genome Analysis Toolkit or GATK is a software package developed at the Broad version | versionsuffix | toolchain --------|---------------|---------- -``4.2.3.0`` | ``-Java-11`` | ``GCCcore/11.2.0`` -``4.2.5.0`` | ``-Java-11`` | ``GCCcore/11.2.0`` -``4.2.6.1`` | ``-Java-11`` | ``GCCcore/11.2.0`` ``4.3.0.0`` | ``-Java-11`` | ``GCCcore/11.3.0`` ``4.3.0.0`` | ``-Java-11`` | ``GCCcore/12.3.0`` ``4.4.0.0`` | ``-Java-17`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/g/GCC.md b/docs/version-specific/supported-software/g/GCC.md index 7885c47400..b93b22be62 100644 --- a/docs/version-specific/supported-software/g/GCC.md +++ b/docs/version-specific/supported-software/g/GCC.md @@ -10,7 +10,6 @@ The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran version | toolchain --------|---------- -``11.2.0`` | ``system`` ``11.3.0`` | ``system`` ``11.4.0`` | ``system`` ``12.1.0`` | ``system`` diff --git a/docs/version-specific/supported-software/g/GCCcore.md b/docs/version-specific/supported-software/g/GCCcore.md index f4a9013f5a..eca7295165 100644 --- a/docs/version-specific/supported-software/g/GCCcore.md +++ b/docs/version-specific/supported-software/g/GCCcore.md @@ -10,7 +10,6 @@ The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran version | toolchain --------|---------- -``11.2.0`` | ``system`` ``11.3.0`` | ``system`` ``11.4.0`` | ``system`` ``12.1.0`` | ``system`` diff --git a/docs/version-specific/supported-software/g/GCTA.md b/docs/version-specific/supported-software/g/GCTA.md index 2b0b8ba0b1..7bbc659c3e 100644 --- a/docs/version-specific/supported-software/g/GCTA.md +++ b/docs/version-specific/supported-software/g/GCTA.md @@ -10,7 +10,6 @@ GCTA (Genome-wide Complex Trait Analysis) is a software package, which was init version | toolchain --------|---------- -``1.94.0beta`` | ``foss/2021b`` ``1.94.0beta`` | ``gfbf/2022a`` ``1.94.1`` | ``gfbf/2022a`` ``1.94.1`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/g/GConf.md b/docs/version-specific/supported-software/g/GConf.md index e5c3e2883f..d2b07e28e1 100644 --- a/docs/version-specific/supported-software/g/GConf.md +++ b/docs/version-specific/supported-software/g/GConf.md @@ -10,7 +10,6 @@ GConf is a system for storing application preferences. It is intended for user version | toolchain --------|---------- -``3.2.6`` | ``GCCcore/11.2.0`` ``3.2.6`` | ``GCCcore/11.3.0`` ``3.2.6`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GD.md b/docs/version-specific/supported-software/g/GD.md index 81d23edf2c..87efebf8af 100644 --- a/docs/version-specific/supported-software/g/GD.md +++ b/docs/version-specific/supported-software/g/GD.md @@ -11,6 +11,7 @@ GD.pm - Interface to Gd Graphics Library version | toolchain --------|---------- ``2.75`` | ``GCCcore/11.3.0`` +``2.77`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GDAL.md b/docs/version-specific/supported-software/g/GDAL.md index 4d056654e9..1864b20319 100644 --- a/docs/version-specific/supported-software/g/GDAL.md +++ b/docs/version-specific/supported-software/g/GDAL.md @@ -10,13 +10,10 @@ GDAL is a translator library for raster geospatial data formats that is released version | toolchain --------|---------- -``2.4.4`` | ``foss/2021b`` -``2.4.4`` | ``intel/2021b`` ``3.10.0`` | ``foss/2024a`` ``3.11.1`` | ``foss/2025a`` ``3.11.3`` | ``foss/2025b`` ``3.11.3`` | ``intel/2025b`` -``3.3.2`` | ``foss/2021b`` ``3.5.0`` | ``foss/2022a`` ``3.6.2`` | ``foss/2022b`` ``3.7.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/g/GDB.md b/docs/version-specific/supported-software/g/GDB.md index fc26bb4926..0e6bebec10 100644 --- a/docs/version-specific/supported-software/g/GDB.md +++ b/docs/version-specific/supported-software/g/GDB.md @@ -10,7 +10,6 @@ The GNU Project Debugger version | toolchain --------|---------- -``11.1`` | ``GCCcore/11.2.0`` ``12.1`` | ``GCCcore/11.3.0`` ``13.2`` | ``GCCcore/12.2.0`` ``13.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GDRCopy.md b/docs/version-specific/supported-software/g/GDRCopy.md index dfef64016a..c9efa72748 100644 --- a/docs/version-specific/supported-software/g/GDRCopy.md +++ b/docs/version-specific/supported-software/g/GDRCopy.md @@ -10,7 +10,6 @@ A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology. version | toolchain --------|---------- -``2.3`` | ``GCCcore/11.2.0`` ``2.3`` | ``GCCcore/11.3.0`` ``2.3`` | ``GCCcore/12.2.0`` ``2.3.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GEMMA.md b/docs/version-specific/supported-software/g/GEMMA.md index 8ed86449dc..ccb7342ac2 100644 --- a/docs/version-specific/supported-software/g/GEMMA.md +++ b/docs/version-specific/supported-software/g/GEMMA.md @@ -10,7 +10,6 @@ Genome-wide Efficient Mixed Model Association version | toolchain --------|---------- -``0.98.5`` | ``foss/2021b`` ``0.98.5`` | ``foss/2022b`` ``0.98.5`` | ``gfbf/2023b`` diff --git a/docs/version-specific/supported-software/g/GEOS.md b/docs/version-specific/supported-software/g/GEOS.md index bee7b34e3c..c1aeee0dc5 100644 --- a/docs/version-specific/supported-software/g/GEOS.md +++ b/docs/version-specific/supported-software/g/GEOS.md @@ -18,8 +18,6 @@ version | toolchain ``3.13.1`` | ``GCC/14.2.0`` ``3.13.1`` | ``GCC/14.3.0`` ``3.13.1`` | ``intel-compilers/2025.2.0`` -``3.9.1`` | ``GCC/11.2.0`` -``3.9.1`` | ``intel-compilers/2021.4.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GL2PS.md b/docs/version-specific/supported-software/g/GL2PS.md index 9abc7ffa34..77c1873edd 100644 --- a/docs/version-specific/supported-software/g/GL2PS.md +++ b/docs/version-specific/supported-software/g/GL2PS.md @@ -10,7 +10,6 @@ GL2PS: an OpenGL to PostScript printing library version | toolchain --------|---------- -``1.4.2`` | ``GCCcore/11.2.0`` ``1.4.2`` | ``GCCcore/11.3.0`` ``1.4.2`` | ``GCCcore/12.2.0`` ``1.4.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GLFW.md b/docs/version-specific/supported-software/g/GLFW.md index 3d2ba2247b..6908619836 100644 --- a/docs/version-specific/supported-software/g/GLFW.md +++ b/docs/version-specific/supported-software/g/GLFW.md @@ -10,7 +10,6 @@ GLFW is an Open Source, multi-platform library for OpenGL, OpenGL ES and Vulkan version | toolchain --------|---------- -``3.3.4`` | ``GCCcore/11.2.0`` ``3.3.8`` | ``GCCcore/11.3.0`` ``3.4`` | ``GCCcore/12.2.0`` ``3.4`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GLM-AED.md b/docs/version-specific/supported-software/g/GLM-AED.md deleted file mode 100644 index 52bd04a65c..0000000000 --- a/docs/version-specific/supported-software/g/GLM-AED.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GLM-AED - -The General Lake Model (GLM) is a water balance and one-dimensional vertical stratification hydrodynamic model, which is dynamically coupled with the AED water quality modelling library. GLM-AED is suitable for simulating conditions in a wide range of natural and engineered lakes, including shallow (well-mixed) and deep (stratified) systems. The model has been successfully applied to systems from the scale of individual ponds and wetlands, to actively operated reservoirs, upto the scale of the Great Lakes. - -*homepage*: - -version | toolchain ---------|---------- -``3.3.0a5`` | ``gompi/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GLM.md b/docs/version-specific/supported-software/g/GLM.md index da9646baae..cb5574c17f 100644 --- a/docs/version-specific/supported-software/g/GLM.md +++ b/docs/version-specific/supported-software/g/GLM.md @@ -10,7 +10,6 @@ OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics s version | toolchain --------|---------- -``0.9.9.8`` | ``GCCcore/11.2.0`` ``0.9.9.8`` | ``GCCcore/11.3.0`` ``0.9.9.8`` | ``GCCcore/12.2.0`` ``0.9.9.8`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GLPK.md b/docs/version-specific/supported-software/g/GLPK.md index 2fe1f9c3e8..dd55919d52 100644 --- a/docs/version-specific/supported-software/g/GLPK.md +++ b/docs/version-specific/supported-software/g/GLPK.md @@ -10,7 +10,6 @@ The GLPK (GNU Linear Programming Kit) package is intended for solving large-sca version | toolchain --------|---------- -``5.0`` | ``GCCcore/11.2.0`` ``5.0`` | ``GCCcore/11.3.0`` ``5.0`` | ``GCCcore/12.2.0`` ``5.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GLib.md b/docs/version-specific/supported-software/g/GLib.md index e0ef164e3a..d11c75b77f 100644 --- a/docs/version-specific/supported-software/g/GLib.md +++ b/docs/version-specific/supported-software/g/GLib.md @@ -10,7 +10,6 @@ GLib is one of the base libraries of the GTK+ project version | toolchain --------|---------- -``2.69.1`` | ``GCCcore/11.2.0`` ``2.72.1`` | ``GCCcore/11.3.0`` ``2.75.0`` | ``GCCcore/12.2.0`` ``2.77.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GMAP-GSNAP.md b/docs/version-specific/supported-software/g/GMAP-GSNAP.md index 99af82ce0d..4d383163e5 100644 --- a/docs/version-specific/supported-software/g/GMAP-GSNAP.md +++ b/docs/version-specific/supported-software/g/GMAP-GSNAP.md @@ -10,7 +10,6 @@ GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences GSNAP: version | toolchain --------|---------- -``2021-12-17`` | ``GCC/11.2.0`` ``2023-02-17`` | ``GCC/11.3.0`` ``2023-04-20`` | ``GCC/12.2.0`` ``2023-04-20`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GMP.md b/docs/version-specific/supported-software/g/GMP.md index da963c0963..1d37cb2d82 100644 --- a/docs/version-specific/supported-software/g/GMP.md +++ b/docs/version-specific/supported-software/g/GMP.md @@ -10,7 +10,6 @@ GMP is a free library for arbitrary precision arithmetic, operating on signed i version | toolchain --------|---------- -``6.2.1`` | ``GCCcore/11.2.0`` ``6.2.1`` | ``GCCcore/11.3.0`` ``6.2.1`` | ``GCCcore/12.2.0`` ``6.2.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GOATOOLS.md b/docs/version-specific/supported-software/g/GOATOOLS.md index 1a83778e22..66464331cb 100644 --- a/docs/version-specific/supported-software/g/GOATOOLS.md +++ b/docs/version-specific/supported-software/g/GOATOOLS.md @@ -10,7 +10,6 @@ A Python library for Gene Ontology analyses version | toolchain --------|---------- -``1.3.1`` | ``foss/2021b`` ``1.3.1`` | ``foss/2022a`` ``1.4.12`` | ``foss/2024a`` ``1.4.5`` | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/g/GObject-Introspection.md b/docs/version-specific/supported-software/g/GObject-Introspection.md index 518055dec8..93b1214fa4 100644 --- a/docs/version-specific/supported-software/g/GObject-Introspection.md +++ b/docs/version-specific/supported-software/g/GObject-Introspection.md @@ -10,7 +10,6 @@ GObject introspection is a middleware layer between C libraries (using GObject) version | toolchain --------|---------- -``1.68.0`` | ``GCCcore/11.2.0`` ``1.72.0`` | ``GCCcore/11.3.0`` ``1.74.0`` | ``GCCcore/12.2.0`` ``1.76.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GPAW.md b/docs/version-specific/supported-software/g/GPAW.md index 476cfb30e6..a816b32a64 100644 --- a/docs/version-specific/supported-software/g/GPAW.md +++ b/docs/version-specific/supported-software/g/GPAW.md @@ -10,9 +10,7 @@ GPAW is a density-functional theory (DFT) Python code based on the projector-aug version | versionsuffix | toolchain --------|---------------|---------- -``22.8.0`` | | ``foss/2021b`` ``22.8.0`` | | ``foss/2022a`` -``22.8.0`` | | ``intel/2021b`` ``22.8.0`` | | ``intel/2022a`` ``23.9.1`` | | ``foss/2022a`` ``23.9.1`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/g/GPy.md b/docs/version-specific/supported-software/g/GPy.md deleted file mode 100644 index 80fdf9b758..0000000000 --- a/docs/version-specific/supported-software/g/GPy.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GPy - -GPy is a Gaussian Process (GP) framework written in Python - -*homepage*: - -version | toolchain ---------|---------- -``1.10.0`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GRASS.md b/docs/version-specific/supported-software/g/GRASS.md index 6907a6feeb..276d435783 100644 --- a/docs/version-specific/supported-software/g/GRASS.md +++ b/docs/version-specific/supported-software/g/GRASS.md @@ -10,7 +10,6 @@ The Geographic Resources Analysis Support System - used for geospatial data man version | toolchain --------|---------- -``8.2.0`` | ``foss/2021b`` ``8.4.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/g/GRIDSS.md b/docs/version-specific/supported-software/g/GRIDSS.md deleted file mode 100644 index 3c33240bda..0000000000 --- a/docs/version-specific/supported-software/g/GRIDSS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GRIDSS - -GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a structural variation caller for Illumina sequencing data. GRIDSS calls variants based on alignment-guided positional de Bruijn graph genome-wide break-end assembly, split read, and read pair evidence. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2.13.2`` | ``-Java-11`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GROMACS.md b/docs/version-specific/supported-software/g/GROMACS.md index 018aee792e..14cfa32f98 100644 --- a/docs/version-specific/supported-software/g/GROMACS.md +++ b/docs/version-specific/supported-software/g/GROMACS.md @@ -12,10 +12,6 @@ version | versionsuffix | toolchain --------|---------------|---------- ``2021.0`` | ``-20250409-constant-pH-CUDA-12.1.1-PLUMED`` | ``foss/2023a`` ``2021.0`` | ``-20250409-constant-pH`` | ``foss/2023a`` -``2021.5`` | ``-CUDA-11.4.1-PLUMED-2.8.0`` | ``foss/2021b`` -``2021.5`` | ``-CUDA-11.4.1`` | ``foss/2021b`` -``2021.5`` | ``-PLUMED-2.8.0`` | ``foss/2021b`` -``2021.5`` | | ``foss/2021b`` ``2023.1`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``2023.1`` | | ``foss/2022a`` ``2023.3`` | ``-CUDA-11.7.0`` | ``foss/2022a`` @@ -31,6 +27,7 @@ version | versionsuffix | toolchain ``2024.4`` | ``-CUDA-12.4.0`` | ``foss/2023b`` ``2024.4`` | ``-PLUMED-2.9.2`` | ``foss/2023b`` ``2024.4`` | | ``foss/2023b`` +``2024.4`` | | ``foss/2024a`` ``2025.2`` | | ``foss/2025a`` ``2025.2`` | | ``foss/2025b`` ``2025.2`` | | ``lfoss/2025b`` diff --git a/docs/version-specific/supported-software/g/GSL.md b/docs/version-specific/supported-software/g/GSL.md index 1f3d240388..3068dc690a 100644 --- a/docs/version-specific/supported-software/g/GSL.md +++ b/docs/version-specific/supported-software/g/GSL.md @@ -10,12 +10,10 @@ The GNU Scientific Library (GSL) is a numerical library for C and C++ programmer version | toolchain --------|---------- -``2.7`` | ``GCC/11.2.0`` ``2.7`` | ``GCC/11.3.0`` ``2.7`` | ``GCC/12.2.0`` ``2.7`` | ``GCC/12.3.0`` ``2.7`` | ``GCC/13.2.0`` -``2.7`` | ``intel-compilers/2021.4.0`` ``2.7`` | ``intel-compilers/2022.1.0`` ``2.7`` | ``intel-compilers/2023.1.0`` ``2.7`` | ``intel-compilers/2023.2.1`` diff --git a/docs/version-specific/supported-software/g/GST-plugins-base.md b/docs/version-specific/supported-software/g/GST-plugins-base.md index ecbe87d763..c2d63ed08c 100644 --- a/docs/version-specific/supported-software/g/GST-plugins-base.md +++ b/docs/version-specific/supported-software/g/GST-plugins-base.md @@ -10,7 +10,6 @@ GStreamer is a library for constructing graphs of media-handling components. Th version | toolchain --------|---------- -``1.18.5`` | ``GCC/11.2.0`` ``1.20.2`` | ``GCC/11.3.0`` ``1.22.1`` | ``GCC/12.2.0`` ``1.22.5`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GStreamer.md b/docs/version-specific/supported-software/g/GStreamer.md index cffc920adb..8ecebd06bf 100644 --- a/docs/version-specific/supported-software/g/GStreamer.md +++ b/docs/version-specific/supported-software/g/GStreamer.md @@ -10,7 +10,6 @@ GStreamer is a library for constructing graphs of media-handling components. Th version | toolchain --------|---------- -``1.18.5`` | ``GCC/11.2.0`` ``1.20.2`` | ``GCC/11.3.0`` ``1.22.1`` | ``GCC/12.2.0`` ``1.22.5`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GTDB-Tk.md b/docs/version-specific/supported-software/g/GTDB-Tk.md index bae8101fa8..98a968442b 100644 --- a/docs/version-specific/supported-software/g/GTDB-Tk.md +++ b/docs/version-specific/supported-software/g/GTDB-Tk.md @@ -10,8 +10,6 @@ A toolkit for assigning objective taxonomic classifications to bacterial and arc version | toolchain --------|---------- -``2.0.0`` | ``intel/2021b`` -``2.1.1`` | ``foss/2021b`` ``2.3.2`` | ``foss/2022a`` ``2.3.2`` | ``foss/2023a`` ``2.4.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/g/GTK3.md b/docs/version-specific/supported-software/g/GTK3.md index 479fac2f32..464abba752 100644 --- a/docs/version-specific/supported-software/g/GTK3.md +++ b/docs/version-specific/supported-software/g/GTK3.md @@ -10,7 +10,6 @@ GTK+ is the primary library used to construct user interfaces in GNOME. It prov version | toolchain --------|---------- -``3.24.31`` | ``GCCcore/11.2.0`` ``3.24.33`` | ``GCCcore/11.3.0`` ``3.24.35`` | ``GCCcore/12.2.0`` ``3.24.37`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GTS.md b/docs/version-specific/supported-software/g/GTS.md index e21b0763b2..237c32e710 100644 --- a/docs/version-specific/supported-software/g/GTS.md +++ b/docs/version-specific/supported-software/g/GTS.md @@ -10,7 +10,6 @@ GTS stands for the GNU Triangulated Surface Library. It is an Open Source Free S version | toolchain --------|---------- -``0.7.6`` | ``GCCcore/11.2.0`` ``0.7.6`` | ``GCCcore/11.3.0`` ``0.7.6`` | ``GCCcore/12.2.0`` ``0.7.6`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GULP.md b/docs/version-specific/supported-software/g/GULP.md deleted file mode 100644 index 679a0e98de..0000000000 --- a/docs/version-specific/supported-software/g/GULP.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GULP - -GULP is a program for performing a variety of types of simulation on materials using boundary conditions of 0-D (molecules and clusters), 1-D (polymers), 2-D (surfaces, slabs and grain boundaries), or 3-D (periodic solids)Band Unfolding code for Plane-wave based calculations - -*homepage*: - -version | toolchain ---------|---------- -``6.1`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GUSHR.md b/docs/version-specific/supported-software/g/GUSHR.md deleted file mode 100644 index a2c9c42c6c..0000000000 --- a/docs/version-specific/supported-software/g/GUSHR.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GUSHR - -Assembly-free construction of UTRs from short read RNA-Seq data on the basis of coding sequence annotation. - -*homepage*: - -version | toolchain ---------|---------- -``2020-09-28`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/Gdk-Pixbuf.md b/docs/version-specific/supported-software/g/Gdk-Pixbuf.md index 8e8fbb65ba..aefecff256 100644 --- a/docs/version-specific/supported-software/g/Gdk-Pixbuf.md +++ b/docs/version-specific/supported-software/g/Gdk-Pixbuf.md @@ -16,7 +16,6 @@ version | toolchain ``2.42.11`` | ``GCCcore/13.3.0`` ``2.42.12`` | ``GCCcore/14.2.0`` ``2.42.12`` | ``GCCcore/14.3.0`` -``2.42.6`` | ``GCCcore/11.2.0`` ``2.42.8`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/g/Geant4.md b/docs/version-specific/supported-software/g/Geant4.md index eb6e73af33..90489aacf8 100644 --- a/docs/version-specific/supported-software/g/Geant4.md +++ b/docs/version-specific/supported-software/g/Geant4.md @@ -10,10 +10,6 @@ Geant4 is a toolkit for the simulation of the passage of particles through matte version | versionsuffix | toolchain --------|---------------|---------- -``10.7.1`` | | ``GCC/11.2.0`` -``11.0.0`` | | ``GCC/11.2.0`` -``11.0.1`` | | ``GCC/11.2.0`` -``11.0.2`` | | ``GCC/11.2.0`` ``11.0.2`` | | ``GCC/11.3.0`` ``11.1.2`` | | ``GCC/11.3.0`` ``11.2.2`` | | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GenMap.md b/docs/version-specific/supported-software/g/GenMap.md deleted file mode 100644 index b546a4f9d1..0000000000 --- a/docs/version-specific/supported-software/g/GenMap.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# GenMap - -GenMap - Fast and Exact Computation of Genome Mappability - -*homepage*: - -version | toolchain ---------|---------- -``1.3.0`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/g/GeneMark-ET.md b/docs/version-specific/supported-software/g/GeneMark-ET.md index bc21e072fc..9aa74c785f 100644 --- a/docs/version-specific/supported-software/g/GeneMark-ET.md +++ b/docs/version-specific/supported-software/g/GeneMark-ET.md @@ -10,7 +10,6 @@ Eukaryotic gene prediction suite with automatic training version | toolchain --------|---------- -``4.71`` | ``GCCcore/11.2.0`` ``4.71`` | ``GCCcore/11.3.0`` ``4.72`` | ``GCCcore/12.3.0`` ``4.72`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/g/GetOrganelle.md b/docs/version-specific/supported-software/g/GetOrganelle.md index b5bd2eb2bf..27fa1f638f 100644 --- a/docs/version-specific/supported-software/g/GetOrganelle.md +++ b/docs/version-specific/supported-software/g/GetOrganelle.md @@ -10,8 +10,6 @@ This toolkit assemblies organelle genome from genomic skimming data. version | toolchain --------|---------- -``1.7.5.3`` | ``foss/2021b`` -``1.7.6.1`` | ``foss/2021b`` ``1.7.7.0`` | ``foss/2022a`` ``1.7.7.1`` | ``foss/2023a`` ``1.7.7.1`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/g/GffCompare.md b/docs/version-specific/supported-software/g/GffCompare.md index 5f2af3561c..7325d83b77 100644 --- a/docs/version-specific/supported-software/g/GffCompare.md +++ b/docs/version-specific/supported-software/g/GffCompare.md @@ -11,7 +11,6 @@ GffCompare provides classification and reference annotation mapping and matchin version | toolchain --------|---------- ``0.12.10`` | ``GCC/14.3.0`` -``0.12.6`` | ``GCC/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/Ghostscript.md b/docs/version-specific/supported-software/g/Ghostscript.md index 40b64dd81d..fafd2712ee 100644 --- a/docs/version-specific/supported-software/g/Ghostscript.md +++ b/docs/version-specific/supported-software/g/Ghostscript.md @@ -16,7 +16,6 @@ version | toolchain ``10.03.1`` | ``GCCcore/13.3.0`` ``10.05.1`` | ``GCCcore/14.2.0`` ``10.05.1`` | ``GCCcore/14.3.0`` -``9.54.0`` | ``GCCcore/11.2.0`` ``9.56.1`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/g/GitPython.md b/docs/version-specific/supported-software/g/GitPython.md index 4d6c84fe2f..db166a870f 100644 --- a/docs/version-specific/supported-software/g/GitPython.md +++ b/docs/version-specific/supported-software/g/GitPython.md @@ -10,7 +10,6 @@ GitPython is a python library used to interact with Git repositories version | toolchain --------|---------- -``3.1.24`` | ``GCCcore/11.2.0`` ``3.1.27`` | ``GCCcore/11.3.0`` ``3.1.31`` | ``GCCcore/12.2.0`` ``3.1.40`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/GlimmerHMM.md b/docs/version-specific/supported-software/g/GlimmerHMM.md index ade76544ac..c402aabc6b 100644 --- a/docs/version-specific/supported-software/g/GlimmerHMM.md +++ b/docs/version-specific/supported-software/g/GlimmerHMM.md @@ -10,7 +10,6 @@ GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model. Alt version | toolchain --------|---------- -``3.0.4c`` | ``GCC/11.2.0`` ``3.0.4c`` | ``GCC/12.3.0`` ``3.0.4c`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/g/Globus-CLI.md b/docs/version-specific/supported-software/g/Globus-CLI.md index cb65a396aa..4edba586e8 100644 --- a/docs/version-specific/supported-software/g/Globus-CLI.md +++ b/docs/version-specific/supported-software/g/Globus-CLI.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``3.16.0`` | ``GCCcore/12.3.0`` ``3.34.0`` | ``GCCcore/13.3.0`` -``3.6.0`` | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/GnuTLS.md b/docs/version-specific/supported-software/g/GnuTLS.md index 78f56c5638..7c76e34581 100644 --- a/docs/version-specific/supported-software/g/GnuTLS.md +++ b/docs/version-specific/supported-software/g/GnuTLS.md @@ -10,7 +10,6 @@ GnuTLS is a secure communications library implementing the SSL, TLS and DTLS pr version | toolchain --------|---------- -``3.7.3`` | ``GCCcore/11.2.0`` ``3.7.8`` | ``GCCcore/11.3.0`` ``3.7.8`` | ``GCCcore/12.3.0`` ``3.7.8`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/g/Grace.md b/docs/version-specific/supported-software/g/Grace.md index f4b6f7c322..ea72907c0a 100644 --- a/docs/version-specific/supported-software/g/Grace.md +++ b/docs/version-specific/supported-software/g/Grace.md @@ -10,7 +10,6 @@ Grace is a WYSIWYG tool to make two-dimensional plots of numerical data. version | toolchain --------|---------- -``5.1.25`` | ``foss/2021b`` ``5.1.25`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/g/GraphicsMagick.md b/docs/version-specific/supported-software/g/GraphicsMagick.md index 1ad74964ab..54090247d4 100644 --- a/docs/version-specific/supported-software/g/GraphicsMagick.md +++ b/docs/version-specific/supported-software/g/GraphicsMagick.md @@ -10,7 +10,6 @@ GraphicsMagick is the swiss army knife of image processing. version | toolchain --------|---------- -``1.3.36`` | ``GCCcore/11.2.0`` ``1.3.45`` | ``GCCcore/12.3.0`` ``1.3.45`` | ``GCCcore/13.2.0`` ``1.3.45`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/g/Graphviz.md b/docs/version-specific/supported-software/g/Graphviz.md index ca2d7d34ae..1e9c6415b7 100644 --- a/docs/version-specific/supported-software/g/Graphviz.md +++ b/docs/version-specific/supported-software/g/Graphviz.md @@ -16,7 +16,6 @@ version | versionsuffix | toolchain ``13.1.2`` | | ``GCCcore/14.2.0`` ``13.1.2`` | ``-minimal`` | ``GCCcore/14.3.0`` ``13.1.2`` | | ``GCCcore/14.3.0`` -``2.50.0`` | | ``GCCcore/11.2.0`` ``5.0.0`` | | ``GCCcore/11.3.0`` ``8.1.0`` | | ``GCCcore/12.2.0`` ``8.1.0`` | | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/Guile.md b/docs/version-specific/supported-software/g/Guile.md index 48b990e49b..301c904714 100644 --- a/docs/version-specific/supported-software/g/Guile.md +++ b/docs/version-specific/supported-software/g/Guile.md @@ -14,7 +14,6 @@ version | toolchain ``3.0.10`` | ``GCCcore/13.3.0`` ``3.0.10`` | ``GCCcore/14.2.0`` ``3.0.10`` | ``GCCcore/14.3.0`` -``3.0.7`` | ``GCCcore/11.2.0`` ``3.0.8`` | ``GCCcore/11.3.0`` ``3.0.9`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/Gurobi.md b/docs/version-specific/supported-software/g/Gurobi.md index 0afb79625a..851a469522 100644 --- a/docs/version-specific/supported-software/g/Gurobi.md +++ b/docs/version-specific/supported-software/g/Gurobi.md @@ -19,9 +19,7 @@ version | toolchain ``12.0.3`` | ``GCCcore/14.2.0`` ``13.0.1`` | ``GCCcore/14.3.0`` ``9.0.3`` | ``system`` -``9.1.0`` | ``system`` ``9.1.2`` | ``system`` -``9.5.0`` | ``GCCcore/11.2.0`` ``9.5.2`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/g/g2clib.md b/docs/version-specific/supported-software/g/g2clib.md index dc97e27dc4..ba7f23a319 100644 --- a/docs/version-specific/supported-software/g/g2clib.md +++ b/docs/version-specific/supported-software/g/g2clib.md @@ -6,11 +6,10 @@ search: Library contains GRIB2 encoder/decoder ('C' version). -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.6.3`` | ``GCCcore/11.2.0`` ``1.7.0`` | ``GCCcore/11.3.0`` ``2.3.0`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/g/gRPC.md b/docs/version-specific/supported-software/g/gRPC.md index f0fd01e62a..0059d9d118 100644 --- a/docs/version-specific/supported-software/g/gRPC.md +++ b/docs/version-specific/supported-software/g/gRPC.md @@ -10,7 +10,6 @@ gRPC is a modern, open source, high-performance remote procedure call (RPC) fram version | toolchain --------|---------- -``1.44.0`` | ``GCCcore/11.2.0`` ``1.57.0`` | ``GCCcore/12.3.0`` ``1.62.1`` | ``GCCcore/13.2.0`` ``1.76.0`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/g/gawk.md b/docs/version-specific/supported-software/g/gawk.md index f683ebbbaf..3f04e68b1c 100644 --- a/docs/version-specific/supported-software/g/gawk.md +++ b/docs/version-specific/supported-software/g/gawk.md @@ -10,7 +10,6 @@ The awk utility interprets a special-purpose programming language that makes it version | toolchain --------|---------- -``5.1.1`` | ``GCC/11.2.0`` ``5.1.1`` | ``GCC/11.3.0`` ``5.3.0`` | ``GCC/12.2.0`` ``5.3.0`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/g/gc.md b/docs/version-specific/supported-software/g/gc.md index 31beccc659..e87f60e8b1 100644 --- a/docs/version-specific/supported-software/g/gc.md +++ b/docs/version-specific/supported-software/g/gc.md @@ -10,7 +10,6 @@ The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage version | toolchain --------|---------- -``8.2.0`` | ``GCCcore/11.2.0`` ``8.2.2`` | ``GCCcore/11.3.0`` ``8.2.4`` | ``GCCcore/12.3.0`` ``8.2.6`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/g/gemmi.md b/docs/version-specific/supported-software/g/gemmi.md index 834ea49e36..c4dccbc087 100644 --- a/docs/version-specific/supported-software/g/gemmi.md +++ b/docs/version-specific/supported-software/g/gemmi.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.6.5`` | ``GCCcore/12.3.0`` ``0.7.1`` | ``GCC/13.3.0`` +``0.7.4`` | ``GCC/14.2.0`` ``0.7.4`` | ``GCC/14.3.0`` diff --git a/docs/version-specific/supported-software/g/genozip.md b/docs/version-specific/supported-software/g/genozip.md index 98ebdf4387..3f81aaa67e 100644 --- a/docs/version-specific/supported-software/g/genozip.md +++ b/docs/version-specific/supported-software/g/genozip.md @@ -10,7 +10,6 @@ Genozip is a compressor for genomic files - it compresses FASTQ, SAM/BAM/CRAM, V version | toolchain --------|---------- -``13.0.5`` | ``GCCcore/11.2.0`` ``15.0.74`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/g/geopandas.md b/docs/version-specific/supported-software/g/geopandas.md index 3d0c364c23..d99d3c5089 100644 --- a/docs/version-specific/supported-software/g/geopandas.md +++ b/docs/version-specific/supported-software/g/geopandas.md @@ -10,12 +10,12 @@ GeoPandas is a project to add support for geographic data to pandas objects. It version | toolchain --------|---------- -``0.11.0`` | ``foss/2021b`` ``0.12.2`` | ``foss/2022a`` ``0.12.2`` | ``foss/2022b`` ``0.14.2`` | ``foss/2023a`` ``1.0.1`` | ``foss/2023b`` ``1.0.1`` | ``foss/2024a`` +``1.1.2`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gettext.md b/docs/version-specific/supported-software/g/gettext.md index ade67b6977..24ee49581a 100644 --- a/docs/version-specific/supported-software/g/gettext.md +++ b/docs/version-specific/supported-software/g/gettext.md @@ -10,7 +10,6 @@ GNU 'gettext' is an important step for the GNU Translation Project, as it is an version | toolchain --------|---------- -``0.21`` | ``GCCcore/11.2.0`` ``0.21`` | ``GCCcore/11.3.0`` ``0.21.1`` | ``GCCcore/12.2.0`` ``0.21.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/gfbf.md b/docs/version-specific/supported-software/g/gfbf.md index 69782b6e01..7e1f4955db 100644 --- a/docs/version-specific/supported-software/g/gfbf.md +++ b/docs/version-specific/supported-software/g/gfbf.md @@ -19,6 +19,7 @@ version | toolchain ``2024a`` | ``system`` ``2025a`` | ``system`` ``2025b`` | ``system`` +``2026.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gffread.md b/docs/version-specific/supported-software/g/gffread.md index 2bb6b2d175..67eeb71b26 100644 --- a/docs/version-specific/supported-software/g/gffread.md +++ b/docs/version-specific/supported-software/g/gffread.md @@ -10,7 +10,6 @@ GFF/GTF parsing utility providing format conversions, region filtering, FASTA se version | toolchain --------|---------- -``0.12.7`` | ``GCCcore/11.2.0`` ``0.12.7`` | ``GCCcore/12.2.0`` ``0.12.7`` | ``GCCcore/12.3.0`` ``0.12.7`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/g/gflags.md b/docs/version-specific/supported-software/g/gflags.md index c39dc16ad6..c4e9cdfb25 100644 --- a/docs/version-specific/supported-software/g/gflags.md +++ b/docs/version-specific/supported-software/g/gflags.md @@ -10,13 +10,13 @@ The gflags package contains a C++ library that implements commandline flags proc version | toolchain --------|---------- -``2.2.2`` | ``GCCcore/11.2.0`` ``2.2.2`` | ``GCCcore/11.3.0`` ``2.2.2`` | ``GCCcore/12.2.0`` ``2.2.2`` | ``GCCcore/12.3.0`` ``2.2.2`` | ``GCCcore/13.3.0`` ``2.2.2`` | ``GCCcore/14.2.0`` ``2.2.2`` | ``GCCcore/14.3.0`` +``2.3.0`` | ``GCCcore/15.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/giflib.md b/docs/version-specific/supported-software/g/giflib.md index a1e65131f2..ecde67d5ef 100644 --- a/docs/version-specific/supported-software/g/giflib.md +++ b/docs/version-specific/supported-software/g/giflib.md @@ -10,7 +10,6 @@ giflib is a library for reading and writing gif images. It is API and ABI compat version | toolchain --------|---------- -``5.2.1`` | ``GCCcore/11.2.0`` ``5.2.1`` | ``GCCcore/11.3.0`` ``5.2.1`` | ``GCCcore/12.2.0`` ``5.2.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/giotto-tda.md b/docs/version-specific/supported-software/g/giotto-tda.md new file mode 100644 index 0000000000..c343760f68 --- /dev/null +++ b/docs/version-specific/supported-software/g/giotto-tda.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# giotto-tda + +giotto-tda is a high-performance topological machine learning toolbox in Python built on top of scikit-learn and is distributed under the GNU AGPLv3 license. It is part of the Giotto family of open-source projects. + +*homepage*: + +version | toolchain +--------|---------- +``0.6.2`` | ``foss/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/g/git-lfs-s3.md b/docs/version-specific/supported-software/g/git-lfs-s3.md new file mode 100644 index 0000000000..878404b0f6 --- /dev/null +++ b/docs/version-specific/supported-software/g/git-lfs-s3.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# git-lfs-s3 + +Custom transfer agent for Git Large File Storage (LFS) which simply sends LFS binary files to an S3 bucket. + +*homepage*: + +version | toolchain +--------|---------- +``0.2.1-20251029`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/g/git.md b/docs/version-specific/supported-software/g/git.md index 8e6324b234..72397ae75b 100644 --- a/docs/version-specific/supported-software/g/git.md +++ b/docs/version-specific/supported-software/g/git.md @@ -10,7 +10,6 @@ Git is a free and open source distributed version control system designed to han version | versionsuffix | toolchain --------|---------------|---------- -``2.33.1`` | ``-nodocs`` | ``GCCcore/11.2.0`` ``2.36.0`` | ``-nodocs`` | ``GCCcore/11.3.0`` ``2.38.1`` | ``-nodocs`` | ``GCCcore/12.2.0`` ``2.41.0`` | ``-nodocs`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/glew.md b/docs/version-specific/supported-software/g/glew.md index 520e2fbbda..7da80655e7 100644 --- a/docs/version-specific/supported-software/g/glew.md +++ b/docs/version-specific/supported-software/g/glew.md @@ -10,9 +10,6 @@ The OpenGL Extension Wrangler Library (GLEW) is a cross-platform open-source C/C version | versionsuffix | toolchain --------|---------------|---------- -``2.2.0`` | ``-egl`` | ``GCCcore/11.2.0`` -``2.2.0`` | ``-glx`` | ``GCCcore/11.2.0`` -``2.2.0`` | ``-osmesa`` | ``GCCcore/11.2.0`` ``2.2.0`` | ``-egl`` | ``GCCcore/11.3.0`` ``2.2.0`` | ``-osmesa`` | ``GCCcore/11.3.0`` ``2.2.0`` | ``-egl`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/g/glib-networking.md b/docs/version-specific/supported-software/g/glib-networking.md index f23857f675..8da53c38b9 100644 --- a/docs/version-specific/supported-software/g/glib-networking.md +++ b/docs/version-specific/supported-software/g/glib-networking.md @@ -10,7 +10,6 @@ Network extensions for GLib version | toolchain --------|---------- -``2.72.1`` | ``GCCcore/11.2.0`` ``2.72.1`` | ``GCCcore/11.3.0`` ``2.72.1`` | ``GCCcore/12.3.0`` ``2.80.1`` | ``GCCcore/14.2.0`` diff --git a/docs/version-specific/supported-software/g/gmpy2.md b/docs/version-specific/supported-software/g/gmpy2.md index bd3444cade..a0fabc5e1e 100644 --- a/docs/version-specific/supported-software/g/gmpy2.md +++ b/docs/version-specific/supported-software/g/gmpy2.md @@ -10,9 +10,7 @@ GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x version | toolchain --------|---------- -``2.1.2`` | ``GCC/11.2.0`` ``2.1.2`` | ``GCC/11.3.0`` -``2.1.2`` | ``intel-compilers/2021.4.0`` ``2.1.2`` | ``intel-compilers/2022.1.0`` ``2.1.5`` | ``GCC/12.2.0`` ``2.1.5`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/g/gnome-common.md b/docs/version-specific/supported-software/g/gnome-common.md new file mode 100644 index 0000000000..574e49aca0 --- /dev/null +++ b/docs/version-specific/supported-software/g/gnome-common.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# gnome-common + +gnome-common was a collection of utilities for the GNOME project. gnome-common is deprecated and has been replaced by autoconf-archive; it should not be used in new projects. + +*homepage*: + +version | toolchain +--------|---------- +``3.18.0`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/g/gnuplot.md b/docs/version-specific/supported-software/g/gnuplot.md index 24c35b2554..60c2dc1939 100644 --- a/docs/version-specific/supported-software/g/gnuplot.md +++ b/docs/version-specific/supported-software/g/gnuplot.md @@ -10,7 +10,6 @@ Portable interactive, function plotting utility version | toolchain --------|---------- -``5.4.2`` | ``GCCcore/11.2.0`` ``5.4.4`` | ``GCCcore/11.3.0`` ``5.4.6`` | ``GCCcore/12.2.0`` ``5.4.8`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/gomkl.md b/docs/version-specific/supported-software/g/gomkl.md index 4bef13e478..9c16fe4064 100644 --- a/docs/version-specific/supported-software/g/gomkl.md +++ b/docs/version-specific/supported-software/g/gomkl.md @@ -10,7 +10,6 @@ GNU Compiler Collection (GCC) based compiler toolchain with OpenMPI and MKL version | toolchain --------|---------- -``2021b`` | ``system`` ``2022a`` | ``system`` ``2023a`` | ``system`` ``2023b`` | ``system`` diff --git a/docs/version-specific/supported-software/g/gompi.md b/docs/version-specific/supported-software/g/gompi.md index eb3098d782..c6c469609b 100644 --- a/docs/version-specific/supported-software/g/gompi.md +++ b/docs/version-specific/supported-software/g/gompi.md @@ -10,7 +10,6 @@ GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for M version | toolchain --------|---------- -``2021b`` | ``system`` ``2022.05`` | ``system`` ``2022.10`` | ``system`` ``2022a`` | ``system`` @@ -22,6 +21,7 @@ version | toolchain ``2024a`` | ``system`` ``2025a`` | ``system`` ``2025b`` | ``system`` +``2026.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/googletest.md b/docs/version-specific/supported-software/g/googletest.md index 6203ba3f88..2b2ca464c7 100644 --- a/docs/version-specific/supported-software/g/googletest.md +++ b/docs/version-specific/supported-software/g/googletest.md @@ -10,7 +10,6 @@ Google's framework for writing C++ tests on a variety of platforms version | toolchain --------|---------- -``1.11.0`` | ``GCCcore/11.2.0`` ``1.11.0`` | ``GCCcore/11.3.0`` ``1.12.1`` | ``GCCcore/12.2.0`` ``1.13.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/gperf.md b/docs/version-specific/supported-software/g/gperf.md index a2b90f96fa..04761d161a 100644 --- a/docs/version-specific/supported-software/g/gperf.md +++ b/docs/version-specific/supported-software/g/gperf.md @@ -10,7 +10,6 @@ GNU gperf is a perfect hash function generator. For a given list of strings, it version | toolchain --------|---------- -``3.1`` | ``GCCcore/11.2.0`` ``3.1`` | ``GCCcore/11.3.0`` ``3.1`` | ``GCCcore/12.2.0`` ``3.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/gperftools.md b/docs/version-specific/supported-software/g/gperftools.md index fbec79a5c0..9213616b9b 100644 --- a/docs/version-specific/supported-software/g/gperftools.md +++ b/docs/version-specific/supported-software/g/gperftools.md @@ -17,7 +17,6 @@ version | toolchain ``2.16`` | ``GCCcore/13.3.0`` ``2.16`` | ``GCCcore/14.2.0`` ``2.17.2`` | ``GCCcore/14.3.0`` -``2.9.1`` | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/g/gpustat.md b/docs/version-specific/supported-software/g/gpustat.md index 007b17e2e4..9ba6c25422 100644 --- a/docs/version-specific/supported-software/g/gpustat.md +++ b/docs/version-specific/supported-software/g/gpustat.md @@ -10,7 +10,6 @@ A simple command-line utility for querying and monitoring GPU status version | toolchain --------|---------- -``1.0.0b1`` | ``GCCcore/11.2.0`` ``1.1`` | ``GCCcore/11.3.0`` ``1.1.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/graphite2.md b/docs/version-specific/supported-software/g/graphite2.md index c8eee99fb2..35718dd0f8 100644 --- a/docs/version-specific/supported-software/g/graphite2.md +++ b/docs/version-specific/supported-software/g/graphite2.md @@ -10,7 +10,6 @@ Graphite is a "smart font" system developed specifically to handle the complexi version | toolchain --------|---------- -``1.3.14`` | ``GCCcore/11.2.0`` ``1.3.14`` | ``GCCcore/11.3.0`` ``1.3.14`` | ``GCCcore/12.2.0`` ``1.3.14`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/groff.md b/docs/version-specific/supported-software/g/groff.md index 254a17da75..de037439ff 100644 --- a/docs/version-specific/supported-software/g/groff.md +++ b/docs/version-specific/supported-software/g/groff.md @@ -10,7 +10,6 @@ Groff (GNU troff) is a typesetting system that reads plain text mixed with forma version | toolchain --------|---------- -``1.22.4`` | ``GCCcore/11.2.0`` ``1.22.4`` | ``GCCcore/11.3.0`` ``1.22.4`` | ``GCCcore/12.1.0`` ``1.22.4`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/g/gsutil.md b/docs/version-specific/supported-software/g/gsutil.md index b3976799f8..c866bea223 100644 --- a/docs/version-specific/supported-software/g/gsutil.md +++ b/docs/version-specific/supported-software/g/gsutil.md @@ -10,7 +10,6 @@ gsutil is a Python application that lets you access Cloud Storage from the comma version | toolchain --------|---------- -``5.10`` | ``GCCcore/11.2.0`` ``5.29`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/g/gzip.md b/docs/version-specific/supported-software/g/gzip.md index ae94c13421..07dee5bd29 100644 --- a/docs/version-specific/supported-software/g/gzip.md +++ b/docs/version-specific/supported-software/g/gzip.md @@ -10,7 +10,6 @@ gzip (GNU zip) is a popular data compression program as a replacement for compre version | toolchain --------|---------- -``1.10`` | ``GCCcore/11.2.0`` ``1.12`` | ``GCCcore/11.3.0`` ``1.12`` | ``GCCcore/12.2.0`` ``1.12`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/g/index.md b/docs/version-specific/supported-software/g/index.md index 0ed1b87df2..3b444c4c95 100644 --- a/docs/version-specific/supported-software/g/index.md +++ b/docs/version-specific/supported-software/g/index.md @@ -17,7 +17,6 @@ search: * [gap](gap.md) * [GapFiller](GapFiller.md) * [gappa](gappa.md) - * [GAPPadder](GAPPadder.md) * [GATB-Core](GATB-Core.md) * [GATE](GATE.md) * [GATK](GATK.md) @@ -53,7 +52,6 @@ search: * [GenerativeModels](GenerativeModels.md) * [GENESPACE](GENESPACE.md) * [gengetopt](gengetopt.md) - * [GenMap](GenMap.md) * [GenomeComb](GenomeComb.md) * [genomepy](genomepy.md) * [GenomeThreader](GenomeThreader.md) @@ -88,9 +86,11 @@ search: * [GimmeMotifs](GimmeMotifs.md) * [Ginkgo](Ginkgo.md) * [Giotto-Suite](Giotto-Suite.md) + * [giotto-tda](giotto-tda.md) * [git](git.md) * [git-annex](git-annex.md) * [git-lfs](git-lfs.md) + * [git-lfs-s3](git-lfs-s3.md) * [GitPython](GitPython.md) * [Givaro](Givaro.md) * [Giza](Giza.md) @@ -106,7 +106,6 @@ search: * [GlimmerHMM](GlimmerHMM.md) * [GLIMPSE](GLIMPSE.md) * [GLM](GLM.md) - * [GLM-AED](GLM-AED.md) * [GlobalArrays](GlobalArrays.md) * [Globus-CLI](Globus-CLI.md) * [glog](glog.md) @@ -119,6 +118,7 @@ search: * [gmpich](gmpich.md) * [gmpy2](gmpy2.md) * [gmsh](gmsh.md) + * [gnome-common](gnome-common.md) * [gnupg-bundle](gnupg-bundle.md) * [gnuplot](gnuplot.md) * [GnuTLS](GnuTLS.md) @@ -144,7 +144,6 @@ search: * [GPflow](GPflow.md) * [GPTL](GPTL.md) * [gpustat](gpustat.md) - * [GPy](GPy.md) * [GPyOpt](GPyOpt.md) * [GPyTorch](GPyTorch.md) * [Grace](Grace.md) @@ -163,7 +162,6 @@ search: * [GRASS](GRASS.md) * [greedy](greedy.md) * [Greenlet](Greenlet.md) - * [GRIDSS](GRIDSS.md) * [groff](groff.md) * [GROMACS](GROMACS.md) * [GROMACS-LS](GROMACS-LS.md) @@ -194,9 +192,7 @@ search: * [Gubbins](Gubbins.md) * [GUIDANCE](GUIDANCE.md) * [Guile](Guile.md) - * [GULP](GULP.md) * [Gurobi](Gurobi.md) - * [GUSHR](GUSHR.md) * [gym-pybullet-drones](gym-pybullet-drones.md) * [Gymnasium](Gymnasium.md) * [gzip](gzip.md) diff --git a/docs/version-specific/supported-software/h/HDDM.md b/docs/version-specific/supported-software/h/HDDM.md deleted file mode 100644 index a8929d1898..0000000000 --- a/docs/version-specific/supported-software/h/HDDM.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# HDDM - -HDDM is a Python toolbox for hierarchical Bayesian parameter estimation of the Drift Diffusion Model (via PyMC). - -*homepage*: - -version | toolchain ---------|---------- -``0.9.9`` | ``foss/2021b`` -``0.9.9`` | ``intel/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/HDF.md b/docs/version-specific/supported-software/h/HDF.md index 9ec5300c08..3538afa795 100644 --- a/docs/version-specific/supported-software/h/HDF.md +++ b/docs/version-specific/supported-software/h/HDF.md @@ -10,7 +10,6 @@ HDF (also known as HDF4) is a library and multi-object file format for storing version | versionsuffix | toolchain --------|---------------|---------- -``4.2.15`` | | ``GCCcore/11.2.0`` ``4.2.15`` | | ``GCCcore/11.3.0`` ``4.2.15`` | | ``GCCcore/12.2.0`` ``4.2.16-2`` | | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/h/HDF5.md b/docs/version-specific/supported-software/h/HDF5.md index ddb0faa42c..2a0e5c7af6 100644 --- a/docs/version-specific/supported-software/h/HDF5.md +++ b/docs/version-specific/supported-software/h/HDF5.md @@ -10,10 +10,7 @@ HDF5 is a data model, library, and file format for storing and managing data. I version | versionsuffix | toolchain --------|---------------|---------- -``1.10.8`` | | ``gompi/2021b`` ``1.10.8`` | | ``gompi/2022a`` -``1.12.1`` | | ``gompi/2021b`` -``1.12.1`` | | ``iimpi/2021b`` ``1.12.2`` | ``-serial`` | ``GCC/11.3.0`` ``1.12.2`` | ``-serial`` | ``NVHPC/22.7-CUDA-11.7.0`` ``1.12.2`` | | ``gompi/2022a`` @@ -31,9 +28,11 @@ version | versionsuffix | toolchain ``1.14.3`` | | ``gompi/2023b`` ``1.14.3`` | | ``iimpi/2023b`` ``1.14.5`` | | ``NVHPC/25.1`` +``1.14.5`` | | ``NVHPC/25.3-CUDA-12.8.0`` ``1.14.5`` | | ``gompi/2024a`` ``1.14.5`` | | ``iimpi/2024a`` ``1.14.6`` | ``-serial`` | ``GCC/14.3.0`` +``1.14.6`` | | ``NVHPC/25.9-CUDA-12.9.1`` ``1.14.6`` | | ``gompi/2025a`` ``1.14.6`` | | ``gompi/2025b`` ``1.14.6`` | | ``iimpi/2025a`` diff --git a/docs/version-specific/supported-software/h/HF-Datasets.md b/docs/version-specific/supported-software/h/HF-Datasets.md index b0e7a3fe16..f3a90afdf6 100644 --- a/docs/version-specific/supported-software/h/HF-Datasets.md +++ b/docs/version-specific/supported-software/h/HF-Datasets.md @@ -14,6 +14,7 @@ version | toolchain ``2.18.0`` | ``gfbf/2023a`` ``3.1.0`` | ``gfbf/2023b`` ``4.0.0`` | ``gfbf/2024a`` +``4.5.0`` | ``gfbf/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HH-suite.md b/docs/version-specific/supported-software/h/HH-suite.md index bdf5788327..8c8a449949 100644 --- a/docs/version-specific/supported-software/h/HH-suite.md +++ b/docs/version-specific/supported-software/h/HH-suite.md @@ -10,7 +10,6 @@ The HH-suite is an open-source software package for sensitive protein sequence version | toolchain --------|---------- -``3.3.0`` | ``gompi/2021b`` ``3.3.0`` | ``gompi/2022a`` ``3.3.0`` | ``gompi/2023a`` ``3.3.0`` | ``gompi/2023b`` diff --git a/docs/version-specific/supported-software/h/HIP.md b/docs/version-specific/supported-software/h/HIP.md deleted file mode 100644 index 2f3d273ced..0000000000 --- a/docs/version-specific/supported-software/h/HIP.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# HIP - -HIP is a C++ Runtime API and Kernel Language that allows developers to create portable applications for AMD and NVIDIA GPUs from single source code. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.5.0`` | ``-amd`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/HISAT2.md b/docs/version-specific/supported-software/h/HISAT2.md index cd4883a117..ae87d4b786 100644 --- a/docs/version-specific/supported-software/h/HISAT2.md +++ b/docs/version-specific/supported-software/h/HISAT2.md @@ -10,7 +10,6 @@ HISAT2 is a fast and sensitive alignment program for mapping next-generation seq version | toolchain --------|---------- -``2.2.1`` | ``gompi/2021b`` ``2.2.1`` | ``gompi/2022a`` ``2.2.1`` | ``gompi/2022b`` ``2.2.1`` | ``gompi/2023a`` diff --git a/docs/version-specific/supported-software/h/HMMER.md b/docs/version-specific/supported-software/h/HMMER.md index 62c47233a1..dedc5a88b9 100644 --- a/docs/version-specific/supported-software/h/HMMER.md +++ b/docs/version-specific/supported-software/h/HMMER.md @@ -10,10 +10,8 @@ HMMER is used for searching sequence databases for homologs of protein sequence version | toolchain --------|---------- -``3.3.2`` | ``gompi/2021b`` ``3.3.2`` | ``gompi/2022a`` ``3.3.2`` | ``gompi/2022b`` -``3.3.2`` | ``iimpi/2021b`` ``3.4`` | ``gompi/2023a`` ``3.4`` | ``gompi/2023b`` ``3.4`` | ``gompi/2024a`` diff --git a/docs/version-specific/supported-software/h/HOLE2.md b/docs/version-specific/supported-software/h/HOLE2.md index e56d798df1..0e93d616de 100644 --- a/docs/version-specific/supported-software/h/HOLE2.md +++ b/docs/version-specific/supported-software/h/HOLE2.md @@ -11,6 +11,7 @@ HOLE is a program that allows the analysis and visualisation of the pore dimensi version | toolchain --------|---------- ``2.3.1`` | ``GCCcore/12.3.0`` +``2.3.1`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/HPCG.md b/docs/version-specific/supported-software/h/HPCG.md index 0cd95d4429..6f0d6a6a74 100644 --- a/docs/version-specific/supported-software/h/HPCG.md +++ b/docs/version-specific/supported-software/h/HPCG.md @@ -10,12 +10,10 @@ The HPCG Benchmark project is an effort to create a more relevant metric for ran version | toolchain --------|---------- -``3.1`` | ``foss/2021b`` ``3.1`` | ``foss/2022a`` ``3.1`` | ``foss/2022b`` ``3.1`` | ``foss/2023a`` ``3.1`` | ``foss/2025b`` -``3.1`` | ``intel/2021b`` ``3.1`` | ``intel/2022a`` ``3.1`` | ``intel/2022b`` ``3.1`` | ``intel/2023a`` diff --git a/docs/version-specific/supported-software/h/HPL.md b/docs/version-specific/supported-software/h/HPL.md index 83e3824ee3..a42f1113c3 100644 --- a/docs/version-specific/supported-software/h/HPL.md +++ b/docs/version-specific/supported-software/h/HPL.md @@ -11,7 +11,6 @@ HPL is a software package that solves a (random) dense linear system in double p version | versionsuffix | toolchain --------|---------------|---------- ``2.0.15`` | ``-CUDA-11.7.0`` | ``intel/2022a`` -``2.3`` | | ``foss/2021b`` ``2.3`` | | ``foss/2022.05`` ``2.3`` | | ``foss/2022.10`` ``2.3`` | | ``foss/2022a`` @@ -23,10 +22,9 @@ version | versionsuffix | toolchain ``2.3`` | | ``foss/2024a`` ``2.3`` | | ``foss/2025a`` ``2.3`` | | ``foss/2025b`` +``2.3`` | | ``foss/2026.1`` ``2.3`` | | ``gmpflf/2024.06`` ``2.3`` | | ``gomkl/2022a`` -``2.3`` | | ``intel/2021b`` -``2.3`` | | ``intel/2022.00`` ``2.3`` | | ``intel/2022.09`` ``2.3`` | | ``intel/2022.11`` ``2.3`` | | ``intel/2022.12`` @@ -39,8 +37,9 @@ version | versionsuffix | toolchain ``2.3`` | | ``intel/2024a`` ``2.3`` | | ``intel/2025a`` ``2.3`` | | ``intel/2025b`` -``2.3`` | | ``iomkl/2021b`` +``2.3`` | | ``intel/2026.1`` ``2.3`` | | ``lfoss/2025b`` +``2.3`` | | ``lfoss/2026.1`` ``2.3`` | | ``lmpflf/2025b`` diff --git a/docs/version-specific/supported-software/h/HTSeq.md b/docs/version-specific/supported-software/h/HTSeq.md index 8a16ca7bd9..7cc93d0c79 100644 --- a/docs/version-specific/supported-software/h/HTSeq.md +++ b/docs/version-specific/supported-software/h/HTSeq.md @@ -10,7 +10,6 @@ HTSeq is a Python library to facilitate processing and analysis of data from hi version | toolchain --------|---------- -``0.11.3`` | ``foss/2021b`` ``2.0.2`` | ``foss/2022a`` ``2.0.7`` | ``foss/2023a`` ``2.0.9`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/h/HTSlib.md b/docs/version-specific/supported-software/h/HTSlib.md index 45b3c948ce..3baf31319f 100644 --- a/docs/version-specific/supported-software/h/HTSlib.md +++ b/docs/version-specific/supported-software/h/HTSlib.md @@ -10,7 +10,6 @@ A C library for reading/writing high-throughput sequencing data. This package i version | toolchain --------|---------- -``1.14`` | ``GCC/11.2.0`` ``1.15.1`` | ``GCC/11.3.0`` ``1.17`` | ``GCC/12.2.0`` ``1.18`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/h/HarfBuzz.md b/docs/version-specific/supported-software/h/HarfBuzz.md index 362f8e27cc..96c0e29f82 100644 --- a/docs/version-specific/supported-software/h/HarfBuzz.md +++ b/docs/version-specific/supported-software/h/HarfBuzz.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``11.2.1`` | ``GCCcore/14.2.0`` ``11.4.1`` | ``GCCcore/14.3.0`` -``2.8.2`` | ``GCCcore/11.2.0`` ``4.2.1`` | ``GCCcore/11.3.0`` ``5.3.1`` | ``GCCcore/12.2.0`` ``5.3.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/h/Horovod.md b/docs/version-specific/supported-software/h/Horovod.md index e5f259b2a7..3699c6ebfd 100644 --- a/docs/version-specific/supported-software/h/Horovod.md +++ b/docs/version-specific/supported-software/h/Horovod.md @@ -4,15 +4,12 @@ search: --- # Horovod -Horovod is a distributed training framework for TensorFlow. +Horovod is a distributed training framework for TensorFlow, PyTorch and MXnet. This build only has PyTorch enabled. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.28.1`` | ``-CUDA-11.4.1-TensorFlow-2.7.1`` | ``foss/2021b`` -``0.28.1`` | ``-CUDA-11.4.1-TensorFlow-2.8.4`` | ``foss/2021b`` -``0.28.1`` | ``-CUDA-11.5.2-PyTorch-1.12.1`` | ``foss/2021b`` ``0.28.1`` | ``-CUDA-11.7.0-PyTorch-1.12.0`` | ``foss/2022a`` ``0.28.1`` | ``-CUDA-11.7.0-PyTorch-1.12.1`` | ``foss/2022a`` ``0.28.1`` | ``-CUDA-11.7.0-PyTorch-1.13.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/h/Hydra.md b/docs/version-specific/supported-software/h/Hydra.md index 3418d208b8..094173e682 100644 --- a/docs/version-specific/supported-software/h/Hydra.md +++ b/docs/version-specific/supported-software/h/Hydra.md @@ -15,6 +15,7 @@ version | versionsuffix | toolchain ``1.3.2`` | | ``GCCcore/13.3.0`` ``1.3.2`` | ``-with-plugins`` | ``foss/2023a`` ``1.3.2`` | ``-with-plugins`` | ``foss/2024a`` +``1.3.2`` | ``-with-plugins`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/Hyperopt.md b/docs/version-specific/supported-software/h/Hyperopt.md index e6502eb98f..643a4b62c9 100644 --- a/docs/version-specific/supported-software/h/Hyperopt.md +++ b/docs/version-specific/supported-software/h/Hyperopt.md @@ -11,6 +11,7 @@ hyperopt is a Python library for optimizing over awkward search spaces with real version | toolchain --------|---------- ``0.2.7`` | ``foss/2022a`` +``0.2.7`` | ``gfbf/2022b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/Hypre.md b/docs/version-specific/supported-software/h/Hypre.md index 4303032dc8..7e848eaa9c 100644 --- a/docs/version-specific/supported-software/h/Hypre.md +++ b/docs/version-specific/supported-software/h/Hypre.md @@ -10,7 +10,6 @@ Hypre is a library for solving large, sparse linear systems of equations on mass version | toolchain --------|---------- -``2.24.0`` | ``intel/2021b`` ``2.25.0`` | ``foss/2022a`` ``2.27.0`` | ``foss/2022b`` ``2.29.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/h/h5netcdf.md b/docs/version-specific/supported-software/h/h5netcdf.md index 3df856aded..d54607a62a 100644 --- a/docs/version-specific/supported-software/h/h5netcdf.md +++ b/docs/version-specific/supported-software/h/h5netcdf.md @@ -10,7 +10,6 @@ A Python interface for the netCDF4 file-format that reads and writes local or re version | toolchain --------|---------- -``1.1.0`` | ``foss/2021b`` ``1.2.0`` | ``foss/2022a`` ``1.2.0`` | ``foss/2023a`` ``1.5.0`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/h/h5py.md b/docs/version-specific/supported-software/h/h5py.md index a35a20dde1..67396a5d4c 100644 --- a/docs/version-specific/supported-software/h/h5py.md +++ b/docs/version-specific/supported-software/h/h5py.md @@ -11,12 +11,13 @@ HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical version | versionsuffix | toolchain --------|---------------|---------- ``3.11.0`` | | ``foss/2023b`` +``3.11.0`` | | ``intel/2023b`` ``3.12.1`` | | ``foss/2024a`` ``3.14.0`` | | ``foss/2025a`` ``3.14.0`` | | ``foss/2025b`` ``3.14.0`` | ``-serial`` | ``gfbf/2025b`` -``3.6.0`` | | ``foss/2021b`` -``3.6.0`` | | ``intel/2021b`` +``3.14.0`` | | ``intel/2025b`` +``3.14.0`` | | ``lfoss/2025b`` ``3.7.0`` | | ``foss/2022a`` ``3.7.0`` | | ``intel/2022a`` ``3.8.0`` | | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/h/harvest-tools.md b/docs/version-specific/supported-software/h/harvest-tools.md index 9b5ef18293..b7f1208299 100644 --- a/docs/version-specific/supported-software/h/harvest-tools.md +++ b/docs/version-specific/supported-software/h/harvest-tools.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.3`` | ``GCCcore/12.3.0`` ``1.3`` | ``GCCcore/13.2.0`` +``1.3`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/h/hector.md b/docs/version-specific/supported-software/h/hector.md deleted file mode 100644 index 57eb181af7..0000000000 --- a/docs/version-specific/supported-software/h/hector.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# hector - -This is the repository for Hector, an open source, object-oriented, simple global climate carbon-cycle model. It runs essentially instantaneously while still representing the most critical global scale earth system processes, and is one of a class of models heavily used for for emulating complex climate models and uncertainty analyses. - -*homepage*: - -version | toolchain ---------|---------- -``2.5.0`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/help2man.md b/docs/version-specific/supported-software/h/help2man.md index bfdae77285..c38b0ee80a 100644 --- a/docs/version-specific/supported-software/h/help2man.md +++ b/docs/version-specific/supported-software/h/help2man.md @@ -10,7 +10,6 @@ help2man produces simple manual pages from the '--help' and '--version' output o version | toolchain --------|---------- -``1.48.3`` | ``GCCcore/11.2.0`` ``1.49.2`` | ``GCCcore/11.3.0`` ``1.49.2`` | ``GCCcore/12.1.0`` ``1.49.2`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/h/hifiasm.md b/docs/version-specific/supported-software/h/hifiasm.md index 39a1a8c939..539f6b31ac 100644 --- a/docs/version-specific/supported-software/h/hifiasm.md +++ b/docs/version-specific/supported-software/h/hifiasm.md @@ -10,7 +10,6 @@ Hifiasm: a haplotype-resolved assembler for accurate Hifi reads. version | toolchain --------|---------- -``0.19.5`` | ``GCCcore/11.2.0`` ``0.19.7`` | ``GCCcore/12.2.0`` ``0.23.0`` | ``GCCcore/12.3.0`` ``0.23.0`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/h/hiredis.md b/docs/version-specific/supported-software/h/hiredis.md index 2edf3c6632..3ce372de25 100644 --- a/docs/version-specific/supported-software/h/hiredis.md +++ b/docs/version-specific/supported-software/h/hiredis.md @@ -10,7 +10,6 @@ Hiredis is a minimalistic C client library for the Redis database. It is minima version | toolchain --------|---------- -``1.0.2`` | ``GCCcore/11.2.0`` ``1.0.2`` | ``GCCcore/11.3.0`` ``1.2.0`` | ``GCCcore/12.2.0`` ``1.2.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/h/histolab.md b/docs/version-specific/supported-software/h/histolab.md index 1964646a60..01a35cf686 100644 --- a/docs/version-specific/supported-software/h/histolab.md +++ b/docs/version-specific/supported-software/h/histolab.md @@ -4,13 +4,12 @@ search: --- # histolab -Library for Digital Pathology Image Processing +Library for Digital Pathology Image Processing. *homepage*: version | toolchain --------|---------- -``0.4.1`` | ``foss/2021b`` ``0.6.0`` | ``foss/2022a`` ``0.7.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/h/how_are_we_stranded_here.md b/docs/version-specific/supported-software/h/how_are_we_stranded_here.md deleted file mode 100644 index 16920c66b8..0000000000 --- a/docs/version-specific/supported-software/h/how_are_we_stranded_here.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# how_are_we_stranded_here - -Python package for testing strandedness of RNA-Seq fastq files - -*homepage*: - -version | toolchain ---------|---------- -``1.0.1`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/h/humann.md b/docs/version-specific/supported-software/h/humann.md index f538e662d8..6c18ca8ea8 100644 --- a/docs/version-specific/supported-software/h/humann.md +++ b/docs/version-specific/supported-software/h/humann.md @@ -11,6 +11,7 @@ HUMAnN v3 is a pipeline for efficiently and accurately determining the coverage version | toolchain --------|---------- ``3.6`` | ``foss/2022a`` +``3.9`` | ``GCC/12.3.0`` ``3.9`` | ``foss/2023a`` ``3.9`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/h/hunspell.md b/docs/version-specific/supported-software/h/hunspell.md index d9308dcb72..e51a25de20 100644 --- a/docs/version-specific/supported-software/h/hunspell.md +++ b/docs/version-specific/supported-software/h/hunspell.md @@ -6,11 +6,10 @@ search: Hunspell is a spell checker and morphological analyzer library and program designed for languageswith rich morphology and complex word compounding or character encoding. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.7.1`` | ``GCCcore/11.2.0`` ``1.7.1`` | ``GCCcore/11.3.0`` ``1.7.2`` | ``GCCcore/12.3.0`` ``1.7.2`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/h/hwdata.md b/docs/version-specific/supported-software/h/hwdata.md new file mode 100644 index 0000000000..9796c5d656 --- /dev/null +++ b/docs/version-specific/supported-software/h/hwdata.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# hwdata + +hwdata contains various hardware identification and configuration data, such as the pci.ids and usb.ids databases. + +*homepage*: + +version | toolchain +--------|---------- +``0.403`` | ``GCCcore/14.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/h/hwloc.md b/docs/version-specific/supported-software/h/hwloc.md index 79de42d26e..f87aaa5190 100644 --- a/docs/version-specific/supported-software/h/hwloc.md +++ b/docs/version-specific/supported-software/h/hwloc.md @@ -13,7 +13,7 @@ version | toolchain ``2.10.0`` | ``GCCcore/13.3.0`` ``2.11.2`` | ``GCCcore/14.2.0`` ``2.12.1`` | ``GCCcore/14.3.0`` -``2.5.0`` | ``GCCcore/11.2.0`` +``2.13.0`` | ``GCCcore/15.2.0`` ``2.7.1`` | ``GCCcore/11.3.0`` ``2.8.0`` | ``GCCcore/12.2.0`` ``2.9.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/h/hypothesis.md b/docs/version-specific/supported-software/h/hypothesis.md index 6c4c4d5cd5..d24fe0c882 100644 --- a/docs/version-specific/supported-software/h/hypothesis.md +++ b/docs/version-specific/supported-software/h/hypothesis.md @@ -10,12 +10,10 @@ Hypothesis is an advanced testing library for Python. It lets you write tests wh version | versionsuffix | toolchain --------|---------------|---------- -``4.57.1`` | ``-Python-2.7.18`` | ``GCCcore/11.2.0`` ``4.57.1`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` ``6.103.1`` | | ``GCCcore/13.3.0`` ``6.133.2`` | | ``GCCcore/14.2.0`` ``6.136.6`` | | ``GCCcore/14.3.0`` -``6.14.6`` | | ``GCCcore/11.2.0`` ``6.46.7`` | | ``GCCcore/11.3.0`` ``6.68.2`` | | ``GCCcore/12.2.0`` ``6.82.0`` | | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/h/index.md b/docs/version-specific/supported-software/h/index.md index 559e7420cd..716eb7e746 100644 --- a/docs/version-specific/supported-software/h/index.md +++ b/docs/version-specific/supported-software/h/index.md @@ -23,14 +23,12 @@ search: * [hatchling](hatchling.md) * [HD-BET](HD-BET.md) * [HDBSCAN](HDBSCAN.md) - * [HDDM](HDDM.md) * [HDF](HDF.md) * [HDF-EOS2](HDF-EOS2.md) * [HDF5](HDF5.md) * [hdWGCNA](hdWGCNA.md) * [Health-GPS](Health-GPS.md) * [heat](heat.md) - * [hector](hector.md) * [HEEDS](HEEDS.md) * [HeFFTe](HeFFTe.md) * [helix](helix.md) @@ -51,7 +49,6 @@ search: * [HighFive](HighFive.md) * [HiGHS](HiGHS.md) * [Highway](Highway.md) - * [HIP](HIP.md) * [hiredis](hiredis.md) * [HISAT2](HISAT2.md) * [histolab](histolab.md) @@ -64,7 +61,6 @@ search: * [HOMER](HOMER.md) * [HOOMD-blue](HOOMD-blue.md) * [Horovod](Horovod.md) - * [how_are_we_stranded_here](how_are_we_stranded_here.md) * [hpc-container-wrapper](hpc-container-wrapper.md) * [HPCC](HPCC.md) * [HPCG](HPCG.md) @@ -80,6 +76,7 @@ search: * [huggingface-hub](huggingface-hub.md) * [humann](humann.md) * [hunspell](hunspell.md) + * [hwdata](hwdata.md) * [hwloc](hwloc.md) * [hwloc-CUDA](hwloc-CUDA.md) * [Hybpiper](Hybpiper.md) diff --git a/docs/version-specific/supported-software/i/ICU.md b/docs/version-specific/supported-software/i/ICU.md index 3f5500e07d..480fa16698 100644 --- a/docs/version-specific/supported-software/i/ICU.md +++ b/docs/version-specific/supported-software/i/ICU.md @@ -6,11 +6,10 @@ search: ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications. -*homepage*: +*homepage*: version | toolchain --------|---------- -``69.1`` | ``GCCcore/11.2.0`` ``71.1`` | ``GCCcore/11.3.0`` ``72.1`` | ``GCCcore/12.2.0`` ``73.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/i/IDBA-UD.md b/docs/version-specific/supported-software/i/IDBA-UD.md index dac553e231..a1283b1a01 100644 --- a/docs/version-specific/supported-software/i/IDBA-UD.md +++ b/docs/version-specific/supported-software/i/IDBA-UD.md @@ -10,7 +10,6 @@ IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short Reads Sequenc version | toolchain --------|---------- -``1.1.3`` | ``GCC/11.2.0`` ``1.1.3`` | ``GCCcore/12.3.0`` ``1.1.3`` | ``GCCcore/13.2.0`` ``1.1.3`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/a/AMPtk.md b/docs/version-specific/supported-software/i/IDR.md similarity index 66% rename from docs/version-specific/supported-software/a/AMPtk.md rename to docs/version-specific/supported-software/i/IDR.md index 3d66849970..cbd29f2a9e 100644 --- a/docs/version-specific/supported-software/a/AMPtk.md +++ b/docs/version-specific/supported-software/i/IDR.md @@ -2,15 +2,16 @@ search: boost: 0.5 --- -# AMPtk +# IDR -AMPtk is a series of scripts to process NGS amplicon data using USEARCH and VSEARCH, it can also be used to process any NGS amplicon data and includes databases setup for analysis of fungal ITS, fungal LSU, bacterial 16S, and insect COI amplicons. +The IDR (Irreproducible Discovery Rate) framework is a unified approach to measure the reproducibility of findings identified from replicate experiments and provide highly stable thresholds based on reproducibility. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.5.4`` | ``foss/2021b`` +``2.0.4.2`` | ``foss/2022b`` +``2.0.4.2`` | ``foss/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/IGMPlot.md b/docs/version-specific/supported-software/i/IGMPlot.md index 43d10b4fa9..77dc192408 100644 --- a/docs/version-specific/supported-software/i/IGMPlot.md +++ b/docs/version-specific/supported-software/i/IGMPlot.md @@ -4,13 +4,12 @@ search: --- # IGMPlot -IGMPlot is a free open-source program developed to identify molecular interactions and prepare data to build 2D and 3D representations of them in the molecular environment. +IGMPlot is a free open-source program developed to identify molecular interactions and prepare data to build 2D and 3D representations of them in the molecular environment. *homepage*: version | toolchain --------|---------- -``2.6.9b`` | ``GCC/11.2.0`` ``3.17`` | ``GCC/14.2.0`` diff --git a/docs/version-specific/supported-software/i/IMB.md b/docs/version-specific/supported-software/i/IMB.md index 1b205941be..4de8e25bc3 100644 --- a/docs/version-specific/supported-software/i/IMB.md +++ b/docs/version-specific/supported-software/i/IMB.md @@ -10,7 +10,6 @@ The Intel MPI Benchmarks perform a set of MPI performance measurements for point version | toolchain --------|---------- -``2021.3`` | ``gompi/2021b`` ``2021.3`` | ``gompi/2022a`` ``2021.3`` | ``gompi/2022b`` ``2021.3`` | ``iimpi/2022a`` diff --git a/docs/version-specific/supported-software/i/IPython.md b/docs/version-specific/supported-software/i/IPython.md index e42443ce8f..836e6de028 100644 --- a/docs/version-specific/supported-software/i/IPython.md +++ b/docs/version-specific/supported-software/i/IPython.md @@ -8,18 +8,16 @@ IPython provides a rich architecture for interactive computing with: Powerful i *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.10.0`` | ``-Python-2.7.18`` | ``foss/2021b`` -``7.26.0`` | | ``GCCcore/11.2.0`` -``8.14.0`` | | ``GCCcore/12.2.0`` -``8.14.0`` | | ``GCCcore/12.3.0`` -``8.17.2`` | | ``GCCcore/13.2.0`` -``8.27.0`` | | ``GCCcore/13.3.0`` -``8.28.0`` | | ``GCCcore/13.3.0`` -``8.5.0`` | | ``GCCcore/11.3.0`` -``9.3.0`` | | ``GCCcore/14.2.0`` -``9.4.0`` | | ``GCCcore/14.3.0`` +version | toolchain +--------|---------- +``8.14.0`` | ``GCCcore/12.2.0`` +``8.14.0`` | ``GCCcore/12.3.0`` +``8.17.2`` | ``GCCcore/13.2.0`` +``8.27.0`` | ``GCCcore/13.3.0`` +``8.28.0`` | ``GCCcore/13.3.0`` +``8.5.0`` | ``GCCcore/11.3.0`` +``9.3.0`` | ``GCCcore/14.2.0`` +``9.4.0`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/IQ-TREE.md b/docs/version-specific/supported-software/i/IQ-TREE.md index c5bd4df507..b84be26428 100644 --- a/docs/version-specific/supported-software/i/IQ-TREE.md +++ b/docs/version-specific/supported-software/i/IQ-TREE.md @@ -10,7 +10,6 @@ Efficient phylogenomic software by maximum likelihood version | toolchain --------|---------- -``2.2.1`` | ``gompi/2021b`` ``2.2.2.3`` | ``gompi/2022a`` ``2.2.2.6`` | ``gompi/2022a`` ``2.2.2.6`` | ``gompi/2022b`` diff --git a/docs/version-specific/supported-software/i/IRkernel.md b/docs/version-specific/supported-software/i/IRkernel.md index ed2251db1a..21e8b9406d 100644 --- a/docs/version-specific/supported-software/i/IRkernel.md +++ b/docs/version-specific/supported-software/i/IRkernel.md @@ -10,7 +10,6 @@ The R kernel for the 'Jupyter' environment executes R code which the front-end version | versionsuffix | toolchain --------|---------------|---------- -``1.3`` | ``-R-4.2.0`` | ``foss/2021b`` ``1.3.2`` | ``-R-4.2.1`` | ``foss/2022a`` ``1.3.2`` | ``-R-4.3.2`` | ``gfbf/2023a`` ``1.3.2`` | ``-R-4.4.2`` | ``gfbf/2024a`` diff --git a/docs/version-specific/supported-software/i/ISA-L.md b/docs/version-specific/supported-software/i/ISA-L.md index cc99c2f489..94ee274014 100644 --- a/docs/version-specific/supported-software/i/ISA-L.md +++ b/docs/version-specific/supported-software/i/ISA-L.md @@ -10,7 +10,6 @@ Intelligent Storage Acceleration Library version | toolchain --------|---------- -``2.30.0`` | ``GCCcore/11.2.0`` ``2.30.0`` | ``GCCcore/11.3.0`` ``2.30.0`` | ``GCCcore/12.2.0`` ``2.30.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/i/ISL.md b/docs/version-specific/supported-software/i/ISL.md index 2d5208e7e0..3e136fd5df 100644 --- a/docs/version-specific/supported-software/i/ISL.md +++ b/docs/version-specific/supported-software/i/ISL.md @@ -10,7 +10,6 @@ isl is a library for manipulating sets and relations of integer points bounded b version | toolchain --------|---------- -``0.24`` | ``GCCcore/11.2.0`` ``0.24`` | ``GCCcore/11.3.0`` ``0.26`` | ``GCCcore/12.2.0`` ``0.26`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/i/ITK.md b/docs/version-specific/supported-software/i/ITK.md index 1e992e58b9..74191b6ee8 100644 --- a/docs/version-specific/supported-software/i/ITK.md +++ b/docs/version-specific/supported-software/i/ITK.md @@ -10,7 +10,6 @@ Insight Segmentation and Registration Toolkit (ITK) provides an extensive suite version | toolchain --------|---------- -``5.2.1`` | ``foss/2021b`` ``5.2.1`` | ``foss/2022a`` ``5.3.0`` | ``foss/2022b`` ``5.3.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/i/ImageMagick.md b/docs/version-specific/supported-software/i/ImageMagick.md index 1df265977f..284496c5ed 100644 --- a/docs/version-specific/supported-software/i/ImageMagick.md +++ b/docs/version-specific/supported-software/i/ImageMagick.md @@ -11,7 +11,6 @@ ImageMagick is a software suite to create, edit, compose, or convert bitmap imag version | toolchain --------|---------- ``7.1.0-37`` | ``GCCcore/11.3.0`` -``7.1.0-4`` | ``GCCcore/11.2.0`` ``7.1.0-53`` | ``GCCcore/12.2.0`` ``7.1.1-15`` | ``GCCcore/12.3.0`` ``7.1.1-34`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/i/Infernal.md b/docs/version-specific/supported-software/i/Infernal.md index 3f72a13ffb..06987fea15 100644 --- a/docs/version-specific/supported-software/i/Infernal.md +++ b/docs/version-specific/supported-software/i/Infernal.md @@ -10,7 +10,6 @@ Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases version | toolchain --------|---------- -``1.1.4`` | ``gompi/2021b`` ``1.1.4`` | ``gompi/2022a`` ``1.1.4`` | ``gompi/2022b`` ``1.1.5`` | ``gompi/2023a`` diff --git a/docs/version-specific/supported-software/i/InterProScan.md b/docs/version-specific/supported-software/i/InterProScan.md index 6415112cc8..b26ed72815 100644 --- a/docs/version-specific/supported-software/i/InterProScan.md +++ b/docs/version-specific/supported-software/i/InterProScan.md @@ -11,6 +11,7 @@ InterProScan is a sequence analysis application (nucleotide and protein sequence version | toolchain --------|---------- ``5.62-94.0`` | ``foss/2022b`` +``5.69-101.0`` | ``foss/2023a`` ``5.73-104.0`` | ``GCC/13.3.0`` ``5.77-108.0`` | ``GCC/14.2.0`` diff --git a/docs/version-specific/supported-software/i/Ipopt.md b/docs/version-specific/supported-software/i/Ipopt.md new file mode 100644 index 0000000000..b8d92be8f0 --- /dev/null +++ b/docs/version-specific/supported-software/i/Ipopt.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Ipopt + +Ipopt (Interior Point OPTimizer, pronounced eye-pea-Opt) is a software package for large-scale nonlinear optimization. + +*homepage*: + +version | toolchain +--------|---------- +``3.14.17`` | ``foss/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/i/Iris.md b/docs/version-specific/supported-software/i/Iris.md deleted file mode 100644 index de6e558c24..0000000000 --- a/docs/version-specific/supported-software/i/Iris.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Iris - -A module for improving the insertion sequences of structural variant calls - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.5`` | ``-Java-15`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/i7z.md b/docs/version-specific/supported-software/i/i7z.md deleted file mode 100644 index 7cb03284dd..0000000000 --- a/docs/version-specific/supported-software/i/i7z.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# i7z - -A better i7 (and now i3, i5) reporting tool for Linux - -*homepage*: - -version | toolchain ---------|---------- -``20131012`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/igraph.md b/docs/version-specific/supported-software/i/igraph.md index 2c9c220421..0c4b202c45 100644 --- a/docs/version-specific/supported-software/i/igraph.md +++ b/docs/version-specific/supported-software/i/igraph.md @@ -16,7 +16,7 @@ version | toolchain ``0.10.17`` | ``foss/2025a`` ``0.10.3`` | ``foss/2022a`` ``0.10.6`` | ``foss/2022b`` -``0.9.5`` | ``foss/2021b`` +``1.0.0`` | ``foss/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/iimkl.md b/docs/version-specific/supported-software/i/iimkl.md index 08c178dfd3..708e7f682d 100644 --- a/docs/version-specific/supported-software/i/iimkl.md +++ b/docs/version-specific/supported-software/i/iimkl.md @@ -17,6 +17,7 @@ version | toolchain ``2024a`` | ``system`` ``2025a`` | ``system`` ``2025b`` | ``system`` +``2026.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/iimpi.md b/docs/version-specific/supported-software/i/iimpi.md index c3278deb18..b07e576f87 100644 --- a/docs/version-specific/supported-software/i/iimpi.md +++ b/docs/version-specific/supported-software/i/iimpi.md @@ -10,8 +10,6 @@ Intel C/C++ and Fortran compilers, alongside Intel MPI. version | toolchain --------|---------- -``2021b`` | ``system`` -``2022.00`` | ``system`` ``2022.05`` | ``system`` ``2022.09`` | ``system`` ``2022.11`` | ``system`` @@ -26,6 +24,7 @@ version | toolchain ``2024a`` | ``system`` ``2025a`` | ``system`` ``2025b`` | ``system`` +``2026.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/imageio.md b/docs/version-specific/supported-software/i/imageio.md index 1c6683819e..9c3eebb1e4 100644 --- a/docs/version-specific/supported-software/i/imageio.md +++ b/docs/version-specific/supported-software/i/imageio.md @@ -10,7 +10,6 @@ Imageio is a Python library that provides an easy interface to read and write a version | toolchain --------|---------- -``2.13.5`` | ``foss/2021b`` ``2.22.2`` | ``foss/2022a`` ``2.31.1`` | ``foss/2022b`` ``2.33.1`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/i/imake.md b/docs/version-specific/supported-software/i/imake.md deleted file mode 100644 index 47f41db229..0000000000 --- a/docs/version-specific/supported-software/i/imake.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# imake - -imake is a Makefile-generator that is intended to make it easier to develop software portably for multiple systems. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.8`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/i/imbalanced-learn.md b/docs/version-specific/supported-software/i/imbalanced-learn.md index 0d206c2bd6..9ff36fd6bd 100644 --- a/docs/version-specific/supported-software/i/imbalanced-learn.md +++ b/docs/version-specific/supported-software/i/imbalanced-learn.md @@ -16,7 +16,6 @@ version | toolchain ``0.12.4`` | ``gfbf/2023b`` ``0.12.4`` | ``gfbf/2024a`` ``0.14.0`` | ``gfbf/2024a`` -``0.9.0`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/imgaug.md b/docs/version-specific/supported-software/i/imgaug.md index 5ca6dc8f35..59e3613ff6 100644 --- a/docs/version-specific/supported-software/i/imgaug.md +++ b/docs/version-specific/supported-software/i/imgaug.md @@ -10,8 +10,6 @@ This python library helps you with augmenting images for your machine learning p version | versionsuffix | toolchain --------|---------------|---------- -``0.4.0`` | ``-CUDA-11.4.1`` | ``foss/2021b`` -``0.4.0`` | | ``foss/2021b`` ``0.4.0`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.4.0`` | | ``foss/2022a`` ``0.4.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/i/imkl-FFTW.md b/docs/version-specific/supported-software/i/imkl-FFTW.md index b96496b77f..9c84fdb72d 100644 --- a/docs/version-specific/supported-software/i/imkl-FFTW.md +++ b/docs/version-specific/supported-software/i/imkl-FFTW.md @@ -10,9 +10,6 @@ FFTW interfaces using Intel oneAPI Math Kernel Library version | toolchain --------|---------- -``2021.4.0`` | ``gompi/2021b`` -``2021.4.0`` | ``iimpi/2021b`` -``2022.0.1`` | ``iimpi/2022.00`` ``2022.1.0`` | ``iimpi/2022.05`` ``2022.1.0`` | ``iimpi/2022a`` ``2022.2.0`` | ``iimpi/2022.09`` @@ -32,6 +29,7 @@ version | toolchain ``2025.1.0`` | ``iimpi/2025a`` ``2025.1.0`` | ``iompi/2025a`` ``2025.2.0`` | ``iimpi/2025b`` +``2025.3.1`` | ``iimpi/2026.1`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/imkl.md b/docs/version-specific/supported-software/i/imkl.md index 2c96b6b5f4..017f13a834 100644 --- a/docs/version-specific/supported-software/i/imkl.md +++ b/docs/version-specific/supported-software/i/imkl.md @@ -4,13 +4,14 @@ search: --- # imkl -Intel oneAPI Math Kernel Library +Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2021.4.0`` | ``iompi/2021b`` +``2020.0.166`` | ``NVHPC/25.9-CUDA-12.9.1`` +``2020.0.166`` | ``gompi/2025b`` ``2021.4.0`` | ``system`` ``2022.0.1`` | ``system`` ``2022.1.0`` | ``gompi/2022a`` @@ -26,6 +27,7 @@ version | toolchain ``2024.2.0`` | ``system`` ``2025.1.0`` | ``system`` ``2025.2.0`` | ``system`` +``2025.3.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/impi.md b/docs/version-specific/supported-software/i/impi.md index ad27c1d7ae..5c1c7f2989 100644 --- a/docs/version-specific/supported-software/i/impi.md +++ b/docs/version-specific/supported-software/i/impi.md @@ -16,8 +16,7 @@ version | toolchain ``2021.15.0`` | ``intel-compilers/2025.1.0`` ``2021.15.0`` | ``intel-compilers/2025.1.1`` ``2021.16.1`` | ``intel-compilers/2025.2.0`` -``2021.4.0`` | ``intel-compilers/2021.4.0`` -``2021.5.0`` | ``intel-compilers/2022.0.1`` +``2021.17.2`` | ``intel-compilers/2025.3.3`` ``2021.6.0`` | ``intel-compilers/2022.1.0`` ``2021.7.0`` | ``intel-compilers/2022.2.0`` ``2021.7.1`` | ``intel-compilers/2022.2.1`` diff --git a/docs/version-specific/supported-software/i/index.md b/docs/version-specific/supported-software/i/index.md index edc53db41d..64ebd6f4bb 100644 --- a/docs/version-specific/supported-software/i/index.md +++ b/docs/version-specific/supported-software/i/index.md @@ -8,7 +8,6 @@ search: - * [i7z](i7z.md) * [IcarusVerilog](IcarusVerilog.md) * [iced](iced.md) * [ichorCNA](ichorCNA.md) @@ -17,6 +16,7 @@ search: * [IDBA-UD](IDBA-UD.md) * [idemux](idemux.md) * [IDG](IDG.md) + * [IDR](IDR.md) * [IEntropy](IEntropy.md) * [IgBLAST](IgBLAST.md) * [IGMPlot](IGMPlot.md) @@ -33,7 +33,6 @@ search: * [imageio](imageio.md) * [ImageJ](ImageJ.md) * [ImageMagick](ImageMagick.md) - * [imake](imake.md) * [IMAS-Data-Dictionary](IMAS-Data-Dictionary.md) * [IMAS-ParaView](IMAS-ParaView.md) * [IMAS-Python](IMAS-Python.md) @@ -78,13 +77,13 @@ search: * [IOR](IOR.md) * [ip](ip.md) * [iperf](iperf.md) + * [Ipopt](Ipopt.md) * [ipp](ipp.md) * [ipympl](ipympl.md) * [ipyparallel](ipyparallel.md) * [IPython](IPython.md) * [ipywidgets](ipywidgets.md) * [IQ-TREE](IQ-TREE.md) - * [Iris](Iris.md) * [IRkernel](IRkernel.md) * [irodsfs](irodsfs.md) * [ISA-L](ISA-L.md) diff --git a/docs/version-specific/supported-software/i/indicators.md b/docs/version-specific/supported-software/i/indicators.md index 6fe22bdaa4..0b981b70f9 100644 --- a/docs/version-specific/supported-software/i/indicators.md +++ b/docs/version-specific/supported-software/i/indicators.md @@ -10,7 +10,6 @@ search: version | toolchain --------|---------- -``2.2`` | ``GCCcore/11.2.0`` ``2.2`` | ``GCCcore/11.3.0`` ``2.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/i/inferCNV.md b/docs/version-specific/supported-software/i/inferCNV.md index 0b10838086..b0b388bf75 100644 --- a/docs/version-specific/supported-software/i/inferCNV.md +++ b/docs/version-specific/supported-software/i/inferCNV.md @@ -10,10 +10,10 @@ InferCNV is used to explore tumor single cell RNA-Seq data to identify evidence version | versionsuffix | toolchain --------|---------------|---------- -``1.10.1`` | ``-R-4.1.2`` | ``foss/2021b`` ``1.12.0`` | ``-R-4.2.1`` | ``foss/2022a`` ``1.14.2`` | ``-R-4.2.2`` | ``foss/2022b`` ``1.21.0`` | ``-R-4.3.2`` | ``foss/2023a`` +``1.22.0`` | ``-R-4.4.2`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/infercnvpy.md b/docs/version-specific/supported-software/i/infercnvpy.md index e4f55b50eb..a5ac790947 100644 --- a/docs/version-specific/supported-software/i/infercnvpy.md +++ b/docs/version-specific/supported-software/i/infercnvpy.md @@ -10,8 +10,8 @@ Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy. version | toolchain --------|---------- -``0.4.0`` | ``foss/2021b`` ``0.4.3`` | ``foss/2023a`` +``0.6.1`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/intel-compilers.md b/docs/version-specific/supported-software/i/intel-compilers.md index e6bcbf0c2b..60bafc61b9 100644 --- a/docs/version-specific/supported-software/i/intel-compilers.md +++ b/docs/version-specific/supported-software/i/intel-compilers.md @@ -10,9 +10,6 @@ Intel C, C++ & Fortran compilers (classic and oneAPI) version | versionsuffix | toolchain --------|---------------|---------- -``2021.4.0`` | | ``system`` -``2022.0.1`` | | ``system`` -``2022.0.2`` | | ``system`` ``2022.1.0`` | | ``system`` ``2022.2.0`` | | ``system`` ``2022.2.1`` | | ``system`` @@ -34,6 +31,7 @@ version | versionsuffix | toolchain ``2025.2.0`` | | ``system`` ``2025.2.1`` | | ``system`` ``2025.3.0`` | | ``system`` +``2025.3.3`` | | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/intel.md b/docs/version-specific/supported-software/i/intel.md index ba24711005..9c3aeac1f7 100644 --- a/docs/version-specific/supported-software/i/intel.md +++ b/docs/version-specific/supported-software/i/intel.md @@ -10,8 +10,6 @@ Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Li version | toolchain --------|---------- -``2021b`` | ``system`` -``2022.00`` | ``system`` ``2022.05`` | ``system`` ``2022.09`` | ``system`` ``2022.11`` | ``system`` @@ -26,6 +24,7 @@ version | toolchain ``2024a`` | ``system`` ``2025a`` | ``system`` ``2025b`` | ``system`` +``2026.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/i/intervaltree-python.md b/docs/version-specific/supported-software/i/intervaltree-python.md index 588f3e7596..975a33d661 100644 --- a/docs/version-specific/supported-software/i/intervaltree-python.md +++ b/docs/version-specific/supported-software/i/intervaltree-python.md @@ -10,7 +10,6 @@ A mutable, self-balancing interval tree. Queries may be by point, by range over version | toolchain --------|---------- -``3.1.0`` | ``GCCcore/11.2.0`` ``3.1.0`` | ``GCCcore/11.3.0`` ``3.1.0`` | ``GCCcore/12.2.0`` ``3.1.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/i/intervaltree.md b/docs/version-specific/supported-software/i/intervaltree.md index 42017ea0f1..d454671197 100644 --- a/docs/version-specific/supported-software/i/intervaltree.md +++ b/docs/version-specific/supported-software/i/intervaltree.md @@ -10,7 +10,6 @@ An interval tree can be used to efficiently find a set of numeric intervals ove version | toolchain --------|---------- -``0.1`` | ``GCCcore/11.2.0`` ``0.1`` | ``GCCcore/11.3.0`` ``0.1`` | ``GCCcore/12.2.0`` ``0.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/i/intltool.md b/docs/version-specific/supported-software/i/intltool.md index 9d201df5a6..9401135258 100644 --- a/docs/version-specific/supported-software/i/intltool.md +++ b/docs/version-specific/supported-software/i/intltool.md @@ -10,7 +10,6 @@ intltool is a set of tools to centralize translation of many different file for version | toolchain --------|---------- -``0.51.0`` | ``GCCcore/11.2.0`` ``0.51.0`` | ``GCCcore/11.3.0`` ``0.51.0`` | ``GCCcore/12.2.0`` ``0.51.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/i/iomkl.md b/docs/version-specific/supported-software/i/iomkl.md index 919523930e..3681b21ed0 100644 --- a/docs/version-specific/supported-software/i/iomkl.md +++ b/docs/version-specific/supported-software/i/iomkl.md @@ -10,7 +10,6 @@ Compiler toolchain including Intel compilers, Open MPI and Intel Math Kernel Lib version | toolchain --------|---------- -``2021b`` | ``system`` ``2022b`` | ``system`` ``2023a`` | ``system`` ``2023b`` | ``system`` diff --git a/docs/version-specific/supported-software/i/iompi.md b/docs/version-specific/supported-software/i/iompi.md index d3176d7c24..4d863baa5a 100644 --- a/docs/version-specific/supported-software/i/iompi.md +++ b/docs/version-specific/supported-software/i/iompi.md @@ -10,7 +10,6 @@ Intel C/C++ and Fortran compilers, alongside Open MPI. version | toolchain --------|---------- -``2021b`` | ``system`` ``2022b`` | ``system`` ``2023a`` | ``system`` ``2023b`` | ``system`` diff --git a/docs/version-specific/supported-software/index.md b/docs/version-specific/supported-software/index.md index 4c19df635a..779b54162e 100644 --- a/docs/version-specific/supported-software/index.md +++ b/docs/version-specific/supported-software/index.md @@ -6,7 +6,7 @@ search: *(quick links: [0](./0/index.md) - [a](./a/index.md) - [b](./b/index.md) - [c](./c/index.md) - [d](./d/index.md) - [e](./e/index.md) - [f](./f/index.md) - [g](./g/index.md) - [h](./h/index.md) - [i](./i/index.md) - [j](./j/index.md) - [k](./k/index.md) - [l](./l/index.md) - [m](./m/index.md) - [n](./n/index.md) - [o](./o/index.md) - [p](./p/index.md) - [q](./q/index.md) - [r](./r/index.md) - [s](./s/index.md) - [t](./t/index.md) - [u](./u/index.md) - [v](./v/index.md) - [w](./w/index.md) - [x](./x/index.md) - [y](./y/index.md) - [z](./z/index.md))* -EasyBuild supports 3049 different software packages (incl. toolchains, bundles): +EasyBuild supports 2994 different software packages (incl. toolchains, bundles): * [0](0/index.md) * [4ti2](0/4ti2.md) @@ -23,8 +23,10 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [ACTC](a/ACTC.md) * [AdapterRemoval](a/AdapterRemoval.md) * [AdaptiveCpp](a/AdaptiveCpp.md) + * [ADIOS2](a/ADIOS2.md) * [adjustText](a/adjustText.md) * [ADMIXTURE](a/ADMIXTURE.md) + * [ADOL-C](a/ADOL-C.md) * [Advisor](a/Advisor.md) * [AEDT](a/AEDT.md) * [affinity](a/affinity.md) @@ -61,7 +63,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [AMGX](a/AMGX.md) * [AMICA](a/AMICA.md) * [AMOS](a/AMOS.md) - * [AMPtk](a/AMPtk.md) * [AMRFinderPlus](a/AMRFinderPlus.md) * [AMS](a/AMS.md) * [Anaconda3](a/Anaconda3.md) @@ -96,10 +97,10 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [ArchR](a/ArchR.md) * [archspec](a/archspec.md) * [AreTomo2](a/AreTomo2.md) - * [ARGoS](a/ARGoS.md) * [argtable](a/argtable.md) * [aria2](a/aria2.md) * [Armadillo](a/Armadillo.md) + * [ArmComputeLibrary](a/ArmComputeLibrary.md) * [arpack-ng](a/arpack-ng.md) * [Arriba](a/Arriba.md) * [Arrow](a/Arrow.md) @@ -114,6 +115,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [ASF-SearchAPI](a/ASF-SearchAPI.md) * [assembly-stats](a/assembly-stats.md) * [assimp](a/assimp.md) + * [ASTER](a/ASTER.md) * [astro-tulips](a/astro-tulips.md) * [astropy](a/astropy.md) * [astropy-testing](a/astropy-testing.md) @@ -141,22 +143,19 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [autoplotly](a/autoplotly.md) * [Autotools](a/Autotools.md) * [Avogadro2](a/Avogadro2.md) - * [avro-cpp](a/avro-cpp.md) * [AWS-SDK](a/AWS-SDK.md) * [awscli](a/awscli.md) * [Ax](a/Ax.md) * [b](b/index.md) * [BA3-SNPS-autotune](b/BA3-SNPS-autotune.md) - * [BabelStream](b/BabelStream.md) * [bacio](b/bacio.md) - * [Bader](b/Bader.md) * [BAGEL](b/BAGEL.md) * [bakta](b/bakta.md) * [BAli-Phy](b/BAli-Phy.md) * [bam-readcount](b/bam-readcount.md) - * [Bambi](b/Bambi.md) * [bamFilters](b/bamFilters.md) * [BAMM](b/BAMM.md) + * [BamQuery](b/BamQuery.md) * [bamtofastq](b/bamtofastq.md) * [BamTools](b/BamTools.md) * [Bandage](b/Bandage.md) @@ -193,9 +192,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [BgeeCall](b/BgeeCall.md) * [BgeeDB](b/BgeeDB.md) * [BGEN-enkre](b/BGEN-enkre.md) - * [BiasAdjustCXX](b/BiasAdjustCXX.md) * [BiG-SCAPE](b/BiG-SCAPE.md) - * [BigDFT](b/BigDFT.md) * [BigStitcher-Spark](b/BigStitcher-Spark.md) * [bin2cell](b/bin2cell.md) * [BindCraft](b/BindCraft.md) @@ -203,7 +200,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Bio-DB-HTS](b/Bio-DB-HTS.md) * [Bio-FeatureIO](b/Bio-FeatureIO.md) * [Bio-SearchIO-hmmer](b/Bio-SearchIO-hmmer.md) - * [bioawk](b/bioawk.md) * [biobakery-workflows](b/biobakery-workflows.md) * [biobambam2](b/biobambam2.md) * [biogeme](b/biogeme.md) @@ -228,7 +224,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Block](b/Block.md) * [Blosc](b/Blosc.md) * [Blosc2](b/Blosc2.md) - * [BLT](b/BLT.md) * [bmtagger](b/bmtagger.md) * [bokeh](b/bokeh.md) * [BOLT-LMM](b/BOLT-LMM.md) @@ -274,6 +269,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [c](c/index.md) * [c-ares](c/c-ares.md) * [caddy](c/caddy.md) + * [CaDiCaL](c/CaDiCaL.md) * [CAESES](c/CAESES.md) * [cairo](c/cairo.md) * [cairomm](c/cairomm.md) @@ -291,7 +287,9 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Cartopy](c/Cartopy.md) * [CASA](c/CASA.md) * [casacore](c/casacore.md) + * [CasADi](c/CasADi.md) * [Casanovo](c/Casanovo.md) + * [cascadia](c/cascadia.md) * [CASPR](c/CASPR.md) * [Cassiopeia](c/Cassiopeia.md) * [CASTEP](c/CASTEP.md) @@ -299,7 +297,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [CastXML](c/CastXML.md) * [CatBoost](c/CatBoost.md) * [Catch2](c/Catch2.md) - * [category_encoders](c/category_encoders.md) * [CatLearn](c/CatLearn.md) * [CatMAP](c/CatMAP.md) * [Cbc](c/Cbc.md) @@ -358,19 +355,15 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [cicero](c/cicero.md) * [cimfomfa](c/cimfomfa.md) * [CIRCE](c/CIRCE.md) - * [CIRCexplorer2](c/CIRCexplorer2.md) * [Circlator](c/Circlator.md) * [Circos](c/Circos.md) * [Circuitscape](c/Circuitscape.md) - * [CIRIquant](c/CIRIquant.md) * [cisDIVERSITY](c/cisDIVERSITY.md) * [Clair3](c/Clair3.md) * [Clang](c/Clang.md) - * [Clang-AOMP](c/Clang-AOMP.md) * [Clang-Python-bindings](c/Clang-Python-bindings.md) * [CLANS](c/CLANS.md) * [Clarabel.rs](c/Clarabel.rs.md) - * [CLEAR](c/CLEAR.md) * [clearml](c/clearml.md) * [CLHEP](c/CLHEP.md) * [CLI11](c/CLI11.md) @@ -380,7 +373,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [CLIP](c/CLIP.md) * [cliquer](c/cliquer.md) * [clisops](c/clisops.md) - * [CloudCompare](c/CloudCompare.md) * [Clp](c/Clp.md) * [CLUMPP](c/CLUMPP.md) * [Clustal-Omega](c/Clustal-Omega.md) @@ -388,7 +380,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [ClustalW2](c/ClustalW2.md) * [Cluster-Buster](c/Cluster-Buster.md) * [CMake](c/CMake.md) - * [CMAverse](c/CMAverse.md) * [cmcrameri](c/cmcrameri.md) * [CmdStanR](c/CmdStanR.md) * [cmocean](c/cmocean.md) @@ -400,12 +391,10 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [COAWST-deps](c/COAWST-deps.md) * [COBRApy](c/COBRApy.md) * [CoCoALib](c/CoCoALib.md) - * [CodAn](c/CodAn.md) * [code-cli](c/code-cli.md) * [code-server](c/code-server.md) * [CodingQuarry](c/CodingQuarry.md) * [CodonTransformer](c/CodonTransformer.md) - * [Coin](c/Coin.md) * [CoinUtils](c/CoinUtils.md) * [ColabFold](c/ColabFold.md) * [COLMAP](c/COLMAP.md) @@ -414,7 +403,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [columba](c/columba.md) * [COMEBin](c/COMEBin.md) * [CompareM](c/CompareM.md) - * [Compass](c/Compass.md) * [compleasm](c/compleasm.md) * [Compress-Raw-Zlib](c/Compress-Raw-Zlib.md) * [COMSOL](c/COMSOL.md) @@ -435,8 +423,8 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [CoordgenLibs](c/CoordgenLibs.md) * [Coot](c/Coot.md) * [CopyKAT](c/CopyKAT.md) + * [coremltools](c/coremltools.md) * [Coreutils](c/Coreutils.md) - * [corner](c/corner.md) * [CORSIKA](c/CORSIKA.md) * [COSTA](c/COSTA.md) * [CoSymLib](c/CoSymLib.md) @@ -456,7 +444,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [CppUnit](c/CppUnit.md) * [cppy](c/cppy.md) * [cppyy](c/cppyy.md) - * [cppzmq](c/cppzmq.md) * [cpu_features](c/cpu_features.md) * [cramino](c/cramino.md) * [cramjam](c/cramjam.md) @@ -464,10 +451,8 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [CREST](c/CREST.md) * [CRISPResso2](c/CRISPResso2.md) * [Critic2](c/Critic2.md) - * [cromwell](c/cromwell.md) * [crossguid](c/crossguid.md) * [CrossMap](c/CrossMap.md) - * [Crumble](c/Crumble.md) * [cryoCARE](c/cryoCARE.md) * [crypt4gh](c/crypt4gh.md) * [cryptography](c/cryptography.md) @@ -505,6 +490,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [cuTENSOR](c/cuTENSOR.md) * [cuteSV](c/cuteSV.md) * [CUTLASS](c/CUTLASS.md) + * [cvc5](c/cvc5.md) * [CVglasso](c/CVglasso.md) * [CVX](c/CVX.md) * [CVXOPT](c/CVXOPT.md) @@ -534,7 +520,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [davix](d/davix.md) * [DB](d/DB.md) * [DB_File](d/DB_File.md) - * [DBCSR](d/DBCSR.md) * [DBD-mysql](d/DBD-mysql.md) * [DBG2OLC](d/DBG2OLC.md) * [dblatex](d/dblatex.md) @@ -572,7 +557,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [dftd4](d/dftd4.md) * [DGL](d/DGL.md) * [DIA-NN](d/DIA-NN.md) - * [DIALOGUE](d/DIALOGUE.md) * [DIAMOND](d/DIAMOND.md) * [Dice](d/Dice.md) * [DiCE-ML](d/DiCE-ML.md) @@ -592,10 +576,10 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [DLPack](d/DLPack.md) * [dm-control](d/dm-control.md) * [dm-haiku](d/dm-haiku.md) - * [dm-reverb](d/dm-reverb.md) * [dm-tree](d/dm-tree.md) * [DMLC-Core](d/DMLC-Core.md) * [DMTCP](d/DMTCP.md) + * [docopt.cpp](d/docopt.cpp.md) * [dominate](d/dominate.md) * [dorado](d/dorado.md) * [dotNET-Core](d/dotNET-Core.md) @@ -607,19 +591,17 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [dpcpp](d/dpcpp.md) * [draco](d/draco.md) * [DRAGMAP](d/DRAGMAP.md) + * [DRAM](d/DRAM.md) * [dRep](d/dRep.md) * [drmaa-python](d/drmaa-python.md) - * [DROP](d/DROP.md) * [dssp](d/dssp.md) * [dtc](d/dtc.md) * [dtcmp](d/dtcmp.md) * [DualSPHysics](d/DualSPHysics.md) * [dub](d/dub.md) - * [DUBStepR](d/DUBStepR.md) * [duplex-tools](d/duplex-tools.md) * [dx-toolkit](d/dx-toolkit.md) * [dxpy](d/dxpy.md) - * [DyMat](d/DyMat.md) * [Dynare](d/Dynare.md) * [dynesty](d/dynesty.md) * [Dyninst](d/Dyninst.md) @@ -632,6 +614,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [easi](e/easi.md) * [EasyBuild](e/EasyBuild.md) * [EasyMocap](e/EasyMocap.md) + * [EasyOCR](e/EasyOCR.md) * [EasyPQP](e/EasyPQP.md) * [ebGSEA](e/ebGSEA.md) * [EBSeq](e/EBSeq.md) @@ -650,6 +633,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Eigen](e/Eigen.md) * [EIGENSOFT](e/EIGENSOFT.md) * [einops](e/einops.md) + * [ekg-intervaltree](e/ekg-intervaltree.md) * [elbencho](e/elbencho.md) * [ELFIO](e/ELFIO.md) * [elfutils](e/elfutils.md) @@ -660,7 +644,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [ELPA](e/ELPA.md) * [elprep](e/elprep.md) * [ELSI](e/ELSI.md) - * [ELSI-RCI](e/ELSI-RCI.md) * [Emacs](e/Emacs.md) * [EMBOSS](e/EMBOSS.md) * [Embree](e/Embree.md) @@ -673,6 +656,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [EnergyPlus](e/EnergyPlus.md) * [ensmallen](e/ensmallen.md) * [EntrezDirect](e/EntrezDirect.md) + * [Entwine](e/Entwine.md) * [EPA-ng](e/EPA-ng.md) * [epct](e/epct.md) * [epiScanpy](e/epiScanpy.md) @@ -699,6 +683,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Evo](e/Evo.md) * [EvoDiff](e/EvoDiff.md) * [EvtGen](e/EvtGen.md) + * [Eww](e/Eww.md) * [Excel-Writer-XLSX](e/Excel-Writer-XLSX.md) * [exiv2](e/exiv2.md) * [Exonerate](e/Exonerate.md) @@ -713,7 +698,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [f90nml](f/f90nml.md) * [f90wrap](f/f90wrap.md) * [FAAD2](f/FAAD2.md) - * [FabIO](f/FabIO.md) * [face-recognition](f/face-recognition.md) * [Faiss](f/Faiss.md) * [FALL3D](f/FALL3D.md) @@ -730,18 +714,16 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [FastK](f/FastK.md) * [FastME](f/FastME.md) * [fastml](f/fastml.md) + * [fastobo](f/fastobo.md) * [fastp](f/fastp.md) * [fastparquet](f/fastparquet.md) - * [fastq-tools](f/fastq-tools.md) * [FastQ_Screen](f/FastQ_Screen.md) * [FastQC](f/FastQC.md) - * [FastQTL](f/FastQTL.md) * [fastStructure](f/fastStructure.md) * [fastText](f/fastText.md) * [FastTree](f/FastTree.md) * [FASTX-Toolkit](f/FASTX-Toolkit.md) * [FCM](f/FCM.md) - * [fdict](f/fdict.md) * [FDMNES](f/FDMNES.md) * [FDS](f/FDS.md) * [FEBio](f/FEBio.md) @@ -771,7 +753,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [filecheck-python](f/filecheck-python.md) * [filevercmp](f/filevercmp.md) * [Filtlong](f/Filtlong.md) - * [finder](f/finder.md) * [fineRADstructure](f/fineRADstructure.md) * [fineSTRUCTURE](f/fineSTRUCTURE.md) * [fio](f/fio.md) @@ -800,6 +781,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Fluxbox](f/Fluxbox.md) * [Flye](f/Flye.md) * [FMM3D](f/FMM3D.md) + * [fMRIPrep](f/fMRIPrep.md) * [FMS](f/FMS.md) * [fmt](f/fmt.md) * [fontconfig](f/fontconfig.md) @@ -815,7 +797,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [fpylll](f/fpylll.md) * [FragGeneScan](f/FragGeneScan.md) * [FragPipe](f/FragPipe.md) - * [FreeBarcodes](f/FreeBarcodes.md) * [freebayes](f/freebayes.md) * [freeglut](f/freeglut.md) * [FreeImage](f/FreeImage.md) @@ -824,12 +805,12 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [freetype-py](f/freetype-py.md) * [FreeXL](f/FreeXL.md) * [FriBidi](f/FriBidi.md) + * [FSL](f/FSL.md) * [fsm-lite](f/fsm-lite.md) * [fsom](f/fsom.md) * [ftfy](f/ftfy.md) * [FTGL](f/FTGL.md) * [fugue](f/fugue.md) - * [fumi_tools](f/fumi_tools.md) * [FUNAERO](f/FUNAERO.md) * [funannotate](f/funannotate.md) * [FunGAP](f/FunGAP.md) @@ -846,7 +827,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [gap](g/gap.md) * [GapFiller](g/GapFiller.md) * [gappa](g/gappa.md) - * [GAPPadder](g/GAPPadder.md) * [GATB-Core](g/GATB-Core.md) * [GATE](g/GATE.md) * [GATK](g/GATK.md) @@ -882,7 +862,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [GenerativeModels](g/GenerativeModels.md) * [GENESPACE](g/GENESPACE.md) * [gengetopt](g/gengetopt.md) - * [GenMap](g/GenMap.md) * [GenomeComb](g/GenomeComb.md) * [genomepy](g/genomepy.md) * [GenomeThreader](g/GenomeThreader.md) @@ -917,9 +896,11 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [GimmeMotifs](g/GimmeMotifs.md) * [Ginkgo](g/Ginkgo.md) * [Giotto-Suite](g/Giotto-Suite.md) + * [giotto-tda](g/giotto-tda.md) * [git](g/git.md) * [git-annex](g/git-annex.md) * [git-lfs](g/git-lfs.md) + * [git-lfs-s3](g/git-lfs-s3.md) * [GitPython](g/GitPython.md) * [Givaro](g/Givaro.md) * [Giza](g/Giza.md) @@ -935,7 +916,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [GlimmerHMM](g/GlimmerHMM.md) * [GLIMPSE](g/GLIMPSE.md) * [GLM](g/GLM.md) - * [GLM-AED](g/GLM-AED.md) * [GlobalArrays](g/GlobalArrays.md) * [Globus-CLI](g/Globus-CLI.md) * [glog](g/glog.md) @@ -948,6 +928,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [gmpich](g/gmpich.md) * [gmpy2](g/gmpy2.md) * [gmsh](g/gmsh.md) + * [gnome-common](g/gnome-common.md) * [gnupg-bundle](g/gnupg-bundle.md) * [gnuplot](g/gnuplot.md) * [GnuTLS](g/GnuTLS.md) @@ -973,7 +954,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [GPflow](g/GPflow.md) * [GPTL](g/GPTL.md) * [gpustat](g/gpustat.md) - * [GPy](g/GPy.md) * [GPyOpt](g/GPyOpt.md) * [GPyTorch](g/GPyTorch.md) * [Grace](g/Grace.md) @@ -992,7 +972,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [GRASS](g/GRASS.md) * [greedy](g/greedy.md) * [Greenlet](g/Greenlet.md) - * [GRIDSS](g/GRIDSS.md) * [groff](g/groff.md) * [GROMACS](g/GROMACS.md) * [GROMACS-LS](g/GROMACS-LS.md) @@ -1023,9 +1002,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Gubbins](g/Gubbins.md) * [GUIDANCE](g/GUIDANCE.md) * [Guile](g/Guile.md) - * [GULP](g/GULP.md) * [Gurobi](g/Gurobi.md) - * [GUSHR](g/GUSHR.md) * [gym-pybullet-drones](g/gym-pybullet-drones.md) * [Gymnasium](g/Gymnasium.md) * [gzip](g/gzip.md) @@ -1045,14 +1022,12 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [hatchling](h/hatchling.md) * [HD-BET](h/HD-BET.md) * [HDBSCAN](h/HDBSCAN.md) - * [HDDM](h/HDDM.md) * [HDF](h/HDF.md) * [HDF-EOS2](h/HDF-EOS2.md) * [HDF5](h/HDF5.md) * [hdWGCNA](h/hdWGCNA.md) * [Health-GPS](h/Health-GPS.md) * [heat](h/heat.md) - * [hector](h/hector.md) * [HEEDS](h/HEEDS.md) * [HeFFTe](h/HeFFTe.md) * [helix](h/helix.md) @@ -1073,7 +1048,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [HighFive](h/HighFive.md) * [HiGHS](h/HiGHS.md) * [Highway](h/Highway.md) - * [HIP](h/HIP.md) * [hiredis](h/hiredis.md) * [HISAT2](h/HISAT2.md) * [histolab](h/histolab.md) @@ -1086,7 +1060,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [HOMER](h/HOMER.md) * [HOOMD-blue](h/HOOMD-blue.md) * [Horovod](h/Horovod.md) - * [how_are_we_stranded_here](h/how_are_we_stranded_here.md) * [hpc-container-wrapper](h/hpc-container-wrapper.md) * [HPCC](h/HPCC.md) * [HPCG](h/HPCG.md) @@ -1102,6 +1075,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [huggingface-hub](h/huggingface-hub.md) * [humann](h/humann.md) * [hunspell](h/hunspell.md) + * [hwdata](h/hwdata.md) * [hwloc](h/hwloc.md) * [hwloc-CUDA](h/hwloc-CUDA.md) * [Hybpiper](h/Hybpiper.md) @@ -1112,7 +1086,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [hypothesis](h/hypothesis.md) * [Hypre](h/Hypre.md) * [i](i/index.md) - * [i7z](i/i7z.md) * [IcarusVerilog](i/IcarusVerilog.md) * [iced](i/iced.md) * [ichorCNA](i/ichorCNA.md) @@ -1121,6 +1094,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [IDBA-UD](i/IDBA-UD.md) * [idemux](i/idemux.md) * [IDG](i/IDG.md) + * [IDR](i/IDR.md) * [IEntropy](i/IEntropy.md) * [IgBLAST](i/IgBLAST.md) * [IGMPlot](i/IGMPlot.md) @@ -1137,7 +1111,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [imageio](i/imageio.md) * [ImageJ](i/ImageJ.md) * [ImageMagick](i/ImageMagick.md) - * [imake](i/imake.md) * [IMAS-Data-Dictionary](i/IMAS-Data-Dictionary.md) * [IMAS-ParaView](i/IMAS-ParaView.md) * [IMAS-Python](i/IMAS-Python.md) @@ -1182,13 +1155,13 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [IOR](i/IOR.md) * [ip](i/ip.md) * [iperf](i/iperf.md) + * [Ipopt](i/Ipopt.md) * [ipp](i/ipp.md) * [ipympl](i/ipympl.md) * [ipyparallel](i/ipyparallel.md) * [IPython](i/IPython.md) * [ipywidgets](i/ipywidgets.md) * [IQ-TREE](i/IQ-TREE.md) - * [Iris](i/Iris.md) * [IRkernel](i/IRkernel.md) * [irodsfs](i/irodsfs.md) * [ISA-L](i/ISA-L.md) @@ -1209,7 +1182,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [JACUSA2helper](j/JACUSA2helper.md) * [JAGS](j/JAGS.md) * [Jansson](j/Jansson.md) - * [Jasmine](j/Jasmine.md) * [JasPer](j/JasPer.md) * [Java](j/Java.md) * [jax](j/jax.md) @@ -1226,6 +1198,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Jmol](j/Jmol.md) * [joypy](j/joypy.md) * [JPEG-NCCS](j/JPEG-NCCS.md) + * [JPype](j/JPype.md) * [jq](j/jq.md) * [json-c](j/json-c.md) * [json-fortran](j/json-fortran.md) @@ -1238,6 +1211,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Julia](j/Julia.md) * [juliaup](j/juliaup.md) * [junos-eznc](j/junos-eznc.md) + * [jupyter-bash-kernel](j/jupyter-bash-kernel.md) * [Jupyter-bundle](j/Jupyter-bundle.md) * [jupyter-collaboration](j/jupyter-collaboration.md) * [jupyter-contrib-nbextensions](j/jupyter-contrib-nbextensions.md) @@ -1253,11 +1227,13 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [JupyterLab-git](j/JupyterLab-git.md) * [jupyterlab-h5web](j/jupyterlab-h5web.md) * [jupyterlab-lmod](j/jupyterlab-lmod.md) + * [JupyterLab-NVdashboard](j/JupyterLab-NVdashboard.md) * [jupyterlmod](j/jupyterlmod.md) * [JupyterNotebook](j/JupyterNotebook.md) * [jupyterview](j/jupyterview.md) * [jxrlib](j/jxrlib.md) * [k](k/index.md) + * [k-Wave-python](k/k-Wave-python.md) * [k8](k/k8.md) * [kaggle](k/kaggle.md) * [KaHIP](k/KaHIP.md) @@ -1283,6 +1259,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [koopmans-qe-utils](k/koopmans-qe-utils.md) * [Kornia](k/Kornia.md) * [Kraken](k/Kraken.md) + * [kraken-OCR](k/kraken-OCR.md) * [Kraken2](k/Kraken2.md) * [KrakenTools](k/KrakenTools.md) * [KrakenUniq](k/KrakenUniq.md) @@ -1293,6 +1270,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [l](l/index.md) * [L_RNA_scaffolder](l/L_RNA_scaffolder.md) * [Lab-Streaming-Layer](l/Lab-Streaming-Layer.md) + * [labwc](l/labwc.md) * [Lace](l/Lace.md) * [lagrangian-filtering](l/lagrangian-filtering.md) * [LAME](l/LAME.md) @@ -1314,6 +1292,8 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [LCov](l/LCov.md) * [LDC](l/LDC.md) * [lDDT](l/lDDT.md) + * [LDhelmet](l/LDhelmet.md) + * [LDpop](l/LDpop.md) * [leafcutter](l/leafcutter.md) * [leidenalg](l/leidenalg.md) * [Lep-MAP3](l/Lep-MAP3.md) @@ -1345,8 +1325,10 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [libconfig](l/libconfig.md) * [libcroco](l/libcroco.md) * [libdap](l/libdap.md) + * [libdbusmenu](l/libdbusmenu.md) * [libde265](l/libde265.md) * [libdeflate](l/libdeflate.md) + * [libdisplay-info](l/libdisplay-info.md) * [libdivsufsort](l/libdivsufsort.md) * [libdrm](l/libdrm.md) * [libdwarf](l/libdwarf.md) @@ -1357,6 +1339,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [libepoxy](l/libepoxy.md) * [libetsf_io](l/libetsf_io.md) * [libev](l/libev.md) + * [libevdev](l/libevdev.md) * [libevent](l/libevent.md) * [libexif](l/libexif.md) * [libfabric](l/libfabric.md) @@ -1365,7 +1348,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [libfyaml](l/libfyaml.md) * [libgcrypt](l/libgcrypt.md) * [libgd](l/libgd.md) - * [libgdiplus](l/libgdiplus.md) * [libGDSII](l/libGDSII.md) * [libgeotiff](l/libgeotiff.md) * [libgit2](l/libgit2.md) @@ -1381,10 +1363,12 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [libiconv](l/libiconv.md) * [libidn](l/libidn.md) * [libidn2](l/libidn2.md) + * [libinput](l/libinput.md) * [Libint](l/Libint.md) * [libjpeg-turbo](l/libjpeg-turbo.md) * [libjxl](l/libjxl.md) * [libleidenalg](l/libleidenalg.md) + * [libliftoff](l/libliftoff.md) * [LibLZF](l/LibLZF.md) * [libmad](l/libmad.md) * [libmatheval](l/libmatheval.md) @@ -1395,7 +1379,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [libneurosim](l/libneurosim.md) * [libnotify](l/libnotify.md) * [libnsl](l/libnsl.md) - * [libobjcryst](l/libobjcryst.md) * [libogg](l/libogg.md) * [libopus](l/libopus.md) * [libosmium](l/libosmium.md) @@ -1415,6 +1398,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [librttopo](l/librttopo.md) * [libs3](l/libs3.md) * [libSBML](l/libSBML.md) + * [libsfdo](l/libsfdo.md) * [libsigc++](l/libsigc++.md) * [libsigsegv](l/libsigsegv.md) * [libslirp](l/libslirp.md) @@ -1447,7 +1431,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [libvorbis](l/libvorbis.md) * [libvori](l/libvori.md) * [libvpx](l/libvpx.md) - * [libWallModelledLES](l/libWallModelledLES.md) * [libwebp](l/libwebp.md) * [libwebsockets](l/libwebsockets.md) * [libwnck](l/libwnck.md) @@ -1486,7 +1469,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [lmpflf](l/lmpflf.md) * [lmpich](l/lmpich.md) * [LOBSTER](l/LOBSTER.md) - * [LocARNA](l/LocARNA.md) * [LofarStMan](l/LofarStMan.md) * [lohhla-mod](l/lohhla-mod.md) * [lompi](l/lompi.md) @@ -1534,7 +1516,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Magics](m/Magics.md) * [MagicVLSI](m/MagicVLSI.md) * [magma](m/magma.md) - * [MAGMA-gene-analysis](m/MAGMA-gene-analysis.md) * [mahotas](m/mahotas.md) * [make](m/make.md) * [makedepend](m/makedepend.md) @@ -1546,6 +1527,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Mamba](m/Mamba.md) * [Mamba-SSM](m/Mamba-SSM.md) * [mandrake](m/mandrake.md) + * [mango-auth](m/mango-auth.md) * [mannkendall](m/mannkendall.md) * [manta](m/manta.md) * [mapDamage](m/mapDamage.md) @@ -1582,6 +1564,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [mctc-lib](m/mctc-lib.md) * [McXtrace](m/McXtrace.md) * [MDAnalysis](m/MDAnalysis.md) + * [MDBM](m/MDBM.md) * [MDI](m/MDI.md) * [mdocfile](m/mdocfile.md) * [MDSplus](m/MDSplus.md) @@ -1610,7 +1593,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [MetaBAT](m/MetaBAT.md) * [MetaDecoder](m/MetaDecoder.md) * [MetaEuk](m/MetaEuk.md) - * [MetaGeneAnnotator](m/MetaGeneAnnotator.md) * [MetaGeneMark-2](m/MetaGeneMark-2.md) * [metakernel](m/metakernel.md) * [MetalWalls](m/MetalWalls.md) @@ -1619,9 +1601,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [MetaPhlAn](m/MetaPhlAn.md) * [metaWRAP](m/metaWRAP.md) * [meteogrid](m/meteogrid.md) - * [methylartist](m/methylartist.md) - * [MethylDackel](m/MethylDackel.md) - * [methylpy](m/methylpy.md) * [METIS](m/METIS.md) * [MFEM](m/MFEM.md) * [MFiX](m/MFiX.md) @@ -1635,9 +1614,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [MIGRATE-N](m/MIGRATE-N.md) * [Mikado](m/Mikado.md) * [Miller](m/Miller.md) - * [mimalloc](m/mimalloc.md) * [MinCED](m/MinCED.md) - * [Mini-XML](m/Mini-XML.md) * [miniasm](m/miniasm.md) * [Miniconda3](m/Miniconda3.md) * [Miniforge3](m/Miniforge3.md) @@ -1645,7 +1622,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Minimac4](m/Minimac4.md) * [minimap2](m/minimap2.md) * [MinIONQC](m/MinIONQC.md) - * [Minipolish](m/Minipolish.md) * [miniprot](m/miniprot.md) * [minizip](m/minizip.md) * [minizip-ng](m/minizip-ng.md) @@ -1656,7 +1632,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [MitoHiFi](m/MitoHiFi.md) * [MiXCR](m/MiXCR.md) * [MixMHC2pred](m/MixMHC2pred.md) - * [mkl-service](m/mkl-service.md) * [ml-collections](m/ml-collections.md) * [ml_dtypes](m/ml_dtypes.md) * [MLflow](m/MLflow.md) @@ -1682,7 +1657,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [MoloVol](m/MoloVol.md) * [Molpro](m/Molpro.md) * [momepy](m/momepy.md) - * [MONA](m/MONA.md) * [MONAI](m/MONAI.md) * [MONAI-Label](m/MONAI-Label.md) * [MongoDB](m/MongoDB.md) @@ -1722,11 +1696,9 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [msprime](m/msprime.md) * [mstore](m/mstore.md) * [MuJoCo](m/MuJoCo.md) - * [mujoco-py](m/mujoco-py.md) * [multicharge](m/multicharge.md) * [multichoose](m/multichoose.md) * [MulticoreTSNE](m/MulticoreTSNE.md) - * [MultilevelEstimators](m/MultilevelEstimators.md) * [multiprocess](m/multiprocess.md) * [MultiQC](m/MultiQC.md) * [mumax3](m/mumax3.md) @@ -1742,6 +1714,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Mustache](m/Mustache.md) * [MView](m/MView.md) * [MXNet](m/MXNet.md) + * [mycotools](m/mycotools.md) * [mygene](m/mygene.md) * [mypy](m/mypy.md) * [mzmine](m/mzmine.md) @@ -1749,9 +1722,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [n2v](n/n2v.md) * [NAG](n/NAG.md) * [NAGfor](n/NAGfor.md) - * [NAGlib](n/NAGlib.md) * [NAMD](n/NAMD.md) - * [namedlist](n/namedlist.md) * [nano](n/nano.md) * [nanobind](n/nanobind.md) * [NanoCaller](n/NanoCaller.md) @@ -1761,7 +1732,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [nanoget](n/nanoget.md) * [NanoLyse](n/NanoLyse.md) * [nanomath](n/nanomath.md) - * [nanomax-analysis-utils](n/nanomax-analysis-utils.md) * [NanoPack](n/NanoPack.md) * [NanoPlot](n/NanoPlot.md) * [nanopolish](n/nanopolish.md) @@ -1798,7 +1768,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Netgen](n/Netgen.md) * [netket](n/netket.md) * [NetLogo](n/NetLogo.md) - * [NetPyNE](n/NetPyNE.md) * [nettle](n/nettle.md) * [networkx](n/networkx.md) * [NEURON](n/NEURON.md) @@ -1824,6 +1793,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Nim](n/Nim.md) * [Ninja](n/Ninja.md) * [ninja-python](n/ninja-python.md) + * [Nipype](n/Nipype.md) * [nlohmann_json](n/nlohmann_json.md) * [NLopt](n/NLopt.md) * [NLTK](n/NLTK.md) @@ -1871,10 +1841,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [oceanspy](o/oceanspy.md) * [Octave](o/Octave.md) * [octave-kernel](o/octave-kernel.md) - * [OGDF](o/OGDF.md) * [OGGM](o/OGGM.md) - * [olaFlow](o/olaFlow.md) - * [olego](o/olego.md) * [ollama](o/ollama.md) * [ome-types](o/ome-types.md) * [OmegaFold](o/OmegaFold.md) @@ -1899,7 +1866,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [OpenBLAS](o/OpenBLAS.md) * [Openbox](o/Openbox.md) * [openCARP](o/openCARP.md) - * [OpenCensus-python](o/OpenCensus-python.md) * [OpenCoarrays](o/OpenCoarrays.md) * [OpenColorIO](o/OpenColorIO.md) * [OpenCV](o/OpenCV.md) @@ -1914,6 +1880,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [OpenImageIO](o/OpenImageIO.md) * [OpenJPEG](o/OpenJPEG.md) * [openkim-models](o/openkim-models.md) + * [OpenLB](o/OpenLB.md) * [OpenMEEG](o/OpenMEEG.md) * [OpenMM](o/OpenMM.md) * [OpenMM-Torch](o/OpenMM-Torch.md) @@ -1925,6 +1892,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [openpyxl](o/openpyxl.md) * [OpenQP](o/OpenQP.md) * [OpenSceneGraph](o/OpenSceneGraph.md) + * [OpenSim](o/OpenSim.md) * [OpenSlide](o/OpenSlide.md) * [OpenSlide-Java](o/OpenSlide-Java.md) * [openslide-python](o/openslide-python.md) @@ -1963,7 +1931,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [pagmo](p/pagmo.md) * [pairix](p/pairix.md) * [pairtools](p/pairtools.md) - * [paladin](p/paladin.md) * [Palantir](p/Palantir.md) * [PALEOMIX](p/PALEOMIX.md) * [PALM](p/PALM.md) @@ -1971,7 +1938,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [panaroo](p/panaroo.md) * [Pandoc](p/Pandoc.md) * [Pango](p/Pango.md) - * [pangolin](p/pangolin.md) * [pangomm](p/pangomm.md) * [Panoply](p/Panoply.md) * [PAPI](p/PAPI.md) @@ -1998,7 +1964,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [pathos](p/pathos.md) * [PAUP](p/PAUP.md) * [pauvre](p/pauvre.md) - * [pbipa](p/pbipa.md) + * [pb-CpG-tools](p/pb-CpG-tools.md) * [pblat](p/pblat.md) * [PBZIP2](p/PBZIP2.md) * [PCAngsd](p/PCAngsd.md) @@ -2019,7 +1985,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [PeptideShaker](p/PeptideShaker.md) * [Perl](p/Perl.md) * [Perl-bundle-CPAN](p/Perl-bundle-CPAN.md) - * [Perseus](p/Perseus.md) * [PETSc](p/PETSc.md) * [petsc4py](p/petsc4py.md) * [PfamScan](p/PfamScan.md) @@ -2088,6 +2053,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [poetry](p/poetry.md) * [polars](p/polars.md) * [polymake](p/polymake.md) + * [Polyscope](p/Polyscope.md) * [PoPoolation-TE2](p/PoPoolation-TE2.md) * [poppler](p/poppler.md) * [poppunk](p/poppunk.md) @@ -2102,7 +2068,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [POV-Ray](p/POV-Ray.md) * [powerlaw](p/powerlaw.md) * [pp-sketchlib](p/pp-sketchlib.md) - * [PPanGGOLiN](p/PPanGGOLiN.md) * [ppl](p/ppl.md) * [pplacer](p/pplacer.md) * [pplpy](p/pplpy.md) @@ -2111,14 +2076,12 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [pre-commit](p/pre-commit.md) * [preCICE](p/preCICE.md) * [premailer](p/premailer.md) - * [PREQUAL](p/PREQUAL.md) * [preseq](p/preseq.md) * [presto](p/presto.md) * [PretextMap](p/PretextMap.md) * [pretty-yaml](p/pretty-yaml.md) * [primecount](p/primecount.md) * [primecountpy](p/primecountpy.md) - * [PRINSEQ](p/PRINSEQ.md) * [ProBiS](p/ProBiS.md) * [prodigal](p/prodigal.md) * [PROJ](p/PROJ.md) @@ -2135,11 +2098,9 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [PRSice](p/PRSice.md) * [PSASS](p/PSASS.md) * [PSI4](p/PSI4.md) - * [PsiCLASS](p/PsiCLASS.md) * [PSIPRED](p/PSIPRED.md) * [PSM2](p/PSM2.md) * [psmc](p/psmc.md) - * [PSolver](p/PSolver.md) * [pstoedit](p/pstoedit.md) * [psutil](p/psutil.md) * [psycopg](p/psycopg.md) @@ -2169,6 +2130,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [PyBullet](p/PyBullet.md) * [PyCairo](p/PyCairo.md) * [PyCalib](p/PyCalib.md) + * [PyCBC](p/PyCBC.md) * [pyccel](p/pyccel.md) * [PyCharm](p/PyCharm.md) * [PyCheMPS2](p/PyCheMPS2.md) @@ -2190,7 +2152,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [pyet](p/pyet.md) * [PyEVTK](p/PyEVTK.md) * [PyEXR](p/PyEXR.md) - * [pyFAI](p/pyFAI.md) * [pyfaidx](p/pyfaidx.md) * [pyfasta](p/pyfasta.md) * [pyFFTW](p/pyFFTW.md) @@ -2209,15 +2170,12 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [pyiron-gpl](p/pyiron-gpl.md) * [pylibxc](p/pylibxc.md) * [Pylint](p/Pylint.md) - * [pylipid](p/pylipid.md) * [pyMannKendall](p/pyMannKendall.md) * [pymatgen](p/pymatgen.md) * [pyMBE](p/pyMBE.md) * [PyMC](p/PyMC.md) - * [PyMC3](p/PyMC3.md) - * [pymca](p/pymca.md) * [PyMDE](p/PyMDE.md) - * [pyobjcryst](p/pyobjcryst.md) + * [pyNVML](p/pyNVML.md) * [pyodbc](p/pyodbc.md) * [Pyomo](p/Pyomo.md) * [PyOpenCL](p/PyOpenCL.md) @@ -2234,6 +2192,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [PyQt5](p/PyQt5.md) * [PyQt6](p/PyQt6.md) * [PyQtGraph](p/PyQtGraph.md) + * [pyrho](p/pyrho.md) * [pyro-ppl](p/pyro-ppl.md) * [PyRosetta](p/PyRosetta.md) * [pyrosm](p/pyrosm.md) @@ -2254,10 +2213,12 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [pystring](p/pystring.md) * [PyTables](p/PyTables.md) * [PyTensor](p/PyTensor.md) + * [pyteomics](p/pyteomics.md) * [pytesseract](p/pytesseract.md) * [pytest](p/pytest.md) * [pytest-cpp](p/pytest-cpp.md) * [pytest-flakefinder](p/pytest-flakefinder.md) + * [pytest-forked](p/pytest-forked.md) * [pytest-rerunfailures](p/pytest-rerunfailures.md) * [pytest-shard](p/pytest-shard.md) * [pytest-subtests](p/pytest-subtests.md) @@ -2266,6 +2227,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [pythermalcomfort](p/pythermalcomfort.md) * [PYTHIA](p/PYTHIA.md) * [Python](p/Python.md) + * [python-bidi](p/python-bidi.md) * [python-blosc](p/python-blosc.md) * [Python-bundle](p/Python-bundle.md) * [Python-bundle-PyPI](p/Python-bundle-PyPI.md) @@ -2286,6 +2248,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [python-slugify](p/python-slugify.md) * [python-xxhash](p/python-xxhash.md) * [python-zlib-ng](p/python-zlib-ng.md) + * [pytmatrix](p/pytmatrix.md) * [PyTorch](p/PyTorch.md) * [pytorch-3dunet](p/pytorch-3dunet.md) * [PyTorch-bundle](p/PyTorch-bundle.md) @@ -2319,6 +2282,8 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [qforce](q/qforce.md) * [QGIS](q/QGIS.md) * [Qhull](q/Qhull.md) + * [qibo](q/qibo.md) + * [qibojit](q/qibojit.md) * [QIIME2](q/QIIME2.md) * [Qiskit](q/Qiskit.md) * [qmflows](q/qmflows.md) @@ -2338,7 +2303,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [quarto](q/quarto.md) * [QUAST](q/QUAST.md) * [QuickFF](q/QuickFF.md) - * [QuickPIC](q/QuickPIC.md) * [QuickTree](q/QuickTree.md) * [QuPath](q/QuPath.md) * [Qutip](q/Qutip.md) @@ -2349,9 +2313,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [R-bundle-CRAN](r/R-bundle-CRAN.md) * [R-crumble](r/R-crumble.md) * [R-INLA](r/R-INLA.md) - * [R-MXM](r/R-MXM.md) * [R-tesseract](r/R-tesseract.md) - * [R-transport](r/R-transport.md) * [R2jags](r/R2jags.md) * [r5py](r/r5py.md) * [RabbitMQ](r/RabbitMQ.md) @@ -2368,8 +2330,8 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Rasqal](r/Rasqal.md) * [rasterio](r/rasterio.md) * [rasterstats](r/rasterstats.md) + * [ratarmount](r/ratarmount.md) * [rav1e](r/rav1e.md) - * [Raven](r/Raven.md) * [RAxML](r/RAxML.md) * [RAxML-NG](r/RAxML-NG.md) * [Ray-project](r/Ray-project.md) @@ -2411,6 +2373,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [RFdiffusion-models](r/RFdiffusion-models.md) * [RFdiffusion-schedules](r/RFdiffusion-schedules.md) * [rgdal](r/rgdal.md) + * [RGI](r/RGI.md) * [Rgurobi](r/Rgurobi.md) * [RHEIA](r/RHEIA.md) * [Rhodium](r/Rhodium.md) @@ -2429,20 +2392,13 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [RMBlast](r/RMBlast.md) * [RMextract](r/RMextract.md) * [RNA-Bloom](r/RNA-Bloom.md) - * [RNA-SeQC](r/RNA-SeQC.md) * [rnamotif](r/rnamotif.md) * [rnaQUAST](r/rnaQUAST.md) * [RnBeads](r/RnBeads.md) * [Roary](r/Roary.md) * [robin-map](r/robin-map.md) - * [ROCm](r/ROCm.md) - * [rocm-cmake](r/rocm-cmake.md) - * [ROCm-CompilerSupport](r/ROCm-CompilerSupport.md) * [ROCm-LLVM](r/ROCm-LLVM.md) * [rocm-smi](r/rocm-smi.md) - * [rocminfo](r/rocminfo.md) - * [ROCR-Runtime](r/ROCR-Runtime.md) - * [ROCT-Thunk-Interface](r/ROCT-Thunk-Interface.md) * [ROOT](r/ROOT.md) * [rpmrebuild](r/rpmrebuild.md) * [RPostgreSQL](r/RPostgreSQL.md) @@ -2462,6 +2418,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [rustworkx](r/rustworkx.md) * [s](s/index.md) * [s3fs](s/s3fs.md) + * [s9s](s/s9s.md) * [Sabre](s/Sabre.md) * [safestringlib](s/safestringlib.md) * [Safetensors](s/Safetensors.md) @@ -2471,7 +2428,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Sambamba](s/Sambamba.md) * [samblaster](s/samblaster.md) * [samclip](s/samclip.md) - * [samplot](s/samplot.md) * [SAMtools](s/SAMtools.md) * [SAP](s/SAP.md) * [Satsuma2](s/Satsuma2.md) @@ -2494,7 +2450,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [SCENIC](s/SCENIC.md) * [SCENICplus](s/SCENICplus.md) * [scFEA](s/scFEA.md) - * [SCGid](s/SCGid.md) * [scGSVA](s/scGSVA.md) * [schemdraw](s/schemdraw.md) * [scHiCExplorer](s/scHiCExplorer.md) @@ -2511,17 +2466,18 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [scikit-learn](s/scikit-learn.md) * [scikit-lego](s/scikit-lego.md) * [scikit-misc](s/scikit-misc.md) + * [scikit-multimodallearn](s/scikit-multimodallearn.md) * [scikit-optimize](s/scikit-optimize.md) * [scikit-plot](s/scikit-plot.md) * [SCIP](s/SCIP.md) * [SciPy-bundle](s/SciPy-bundle.md) * [SciTools-Iris](s/SciTools-Iris.md) * [scNanoGPS](s/scNanoGPS.md) + * [SCONE](s/SCONE.md) * [SCons](s/SCons.md) * [SCopeLoomR](s/SCopeLoomR.md) * [Score-P](s/Score-P.md) * [SCOTCH](s/SCOTCH.md) - * [scPred](s/scPred.md) * [SCReadCounts](s/SCReadCounts.md) * [screen](s/screen.md) * [SCRIPro](s/SCRIPro.md) @@ -2540,17 +2496,18 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Seaborn](s/Seaborn.md) * [SEACR](s/SEACR.md) * [SearchGUI](s/SearchGUI.md) - * [SeaView](s/SeaView.md) + * [seatd](s/seatd.md) * [segemehl](s/segemehl.md) * [segment-anything](s/segment-anything.md) * [segmentation-models-pytorch](s/segmentation-models-pytorch.md) * [SeisSol](s/SeisSol.md) - * [SELFIES](s/SELFIES.md) * [SemiBin](s/SemiBin.md) * [semla](s/semla.md) * [sensormotion](s/sensormotion.md) + * [Sentaurus](s/Sentaurus.md) * [Sentence-Transformers](s/Sentence-Transformers.md) * [SentencePiece](s/SentencePiece.md) + * [sentieon-genomics](s/sentieon-genomics.md) * [sentinelsat](s/sentinelsat.md) * [SEPP](s/SEPP.md) * [SeqAn](s/SeqAn.md) @@ -2565,24 +2522,21 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [SeuratDisk](s/SeuratDisk.md) * [SeuratWrappers](s/SeuratWrappers.md) * [SHAP](s/SHAP.md) + * [SHAPEIT5](s/SHAPEIT5.md) * [Shapely](s/Shapely.md) * [ShapeMapper2](s/ShapeMapper2.md) * [shared-mime-info](s/shared-mime-info.md) * [SharedMeatAxe](s/SharedMeatAxe.md) * [ShengBTE](s/ShengBTE.md) - * [Short-Pair](s/Short-Pair.md) * [shovill](s/shovill.md) * [shrinkwrap](s/shrinkwrap.md) - * [SHTns](s/SHTns.md) * [Siesta](s/Siesta.md) * [SignalP](s/SignalP.md) * [silhouetteRank](s/silhouetteRank.md) - * [silx](s/silx.md) * [simanneal](s/simanneal.md) + * [Simbody](s/Simbody.md) * [simde](s/simde.md) - * [simint](s/simint.md) * [SimNIBS](s/SimNIBS.md) - * [SimPEG](s/SimPEG.md) * [Simple-DFTD3](s/Simple-DFTD3.md) * [SimpleITK](s/SimpleITK.md) * [simplification](s/simplification.md) @@ -2597,16 +2551,12 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [sirocco](s/sirocco.md) * [siscone](s/siscone.md) * [sisl](s/sisl.md) - * [SISSO](s/SISSO.md) - * [SISSO++](s/SISSO++.md) * [SKA](s/SKA.md) * [SKA2](s/SKA2.md) * [skani](s/skani.md) * [SKESA](s/SKESA.md) - * [sklearn-pandas](s/sklearn-pandas.md) * [skorch](s/skorch.md) * [sktime](s/sktime.md) - * [SlamDunk](s/SlamDunk.md) * [SLEPc](s/SLEPc.md) * [slepc4py](s/slepc4py.md) * [sleuth](s/sleuth.md) @@ -2614,7 +2564,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Slideflow](s/Slideflow.md) * [SLiM](s/SLiM.md) * [slirp4netns](s/slirp4netns.md) - * [slow5tools](s/slow5tools.md) * [slurm-drmaa](s/slurm-drmaa.md) * [SlurmViewer](s/SlurmViewer.md) * [smafa](s/smafa.md) @@ -2627,14 +2576,12 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [snakemake](s/snakemake.md) * [SNAP](s/SNAP.md) * [SNAP-ESA](s/SNAP-ESA.md) - * [SNAP-ESA-python](s/SNAP-ESA-python.md) * [SNAP-HMM](s/SNAP-HMM.md) * [SnapATAC2](s/SnapATAC2.md) * [SNAPE-pooled](s/SNAPE-pooled.md) * [snappy](s/snappy.md) * [Sniffles](s/Sniffles.md) * [snipit](s/snipit.md) - * [snippy](s/snippy.md) * [snp-dists](s/snp-dists.md) * [snp-sites](s/snp-sites.md) * [snpEff](s/snpEff.md) @@ -2642,15 +2589,14 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [soapcheckr](s/soapcheckr.md) * [SOAPdenovo-Trans](s/SOAPdenovo-Trans.md) * [SOCI](s/SOCI.md) + * [SOD](s/SOD.md) * [Solids4foam](s/Solids4foam.md) * [solo](s/solo.md) * [sonic](s/sonic.md) * [SONIC-bio](s/SONIC-bio.md) * [SoPlex](s/SoPlex.md) - * [SoQt](s/SoQt.md) * [SoupX](s/SoupX.md) * [SoX](s/SoX.md) - * [SoXt](s/SoXt.md) * [SpaceBF](s/SpaceBF.md) * [SpaceRanger](s/SpaceRanger.md) * [spacexr](s/spacexr.md) @@ -2660,6 +2606,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [SPAdes](s/SPAdes.md) * [SpaGene](s/SpaGene.md) * [spaln](s/spaln.md) + * [SPAM](s/SPAM.md) * [span-lite](s/span-lite.md) * [Spark](s/Spark.md) * [sparse-neighbors-search](s/sparse-neighbors-search.md) @@ -2674,6 +2621,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [SpFFT](s/SpFFT.md) * [spglib](s/spglib.md) * [spglib-python](s/spglib-python.md) + * [SPH-EXA](s/SPH-EXA.md) * [Sphinx-RTD-Theme](s/Sphinx-RTD-Theme.md) * [SpiecEasi](s/SpiecEasi.md) * [spin](s/spin.md) @@ -2681,14 +2629,12 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [SPM](s/SPM.md) * [spoa](s/spoa.md) * [SPOOLES](s/SPOOLES.md) - * [SPOTPY](s/SPOTPY.md) * [SPRNG](s/SPRNG.md) * [Spyder](s/Spyder.md) * [sPyRMSD](s/sPyRMSD.md) * [SQLAlchemy](s/SQLAlchemy.md) * [SQLite](s/SQLite.md) * [squashfs-tools](s/squashfs-tools.md) - * [SqueezeMeta](s/SqueezeMeta.md) * [SQUID](s/SQUID.md) * [Squidpy](s/Squidpy.md) * [SQuIRE](s/SQuIRE.md) @@ -2708,15 +2654,14 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Stata](s/Stata.md) * [Statistics-R](s/Statistics-R.md) * [statsmodels](s/statsmodels.md) - * [STEAK](s/STEAK.md) * [Stellarscope](s/Stellarscope.md) * [STITCH](s/STITCH.md) * [stpipeline](s/stpipeline.md) * [strace](s/strace.md) * [Strainberry](s/Strainberry.md) * [STREAM](s/STREAM.md) + * [STREAmS](s/STREAmS.md) * [StringTie](s/StringTie.md) - * [STRique](s/STRique.md) * [Structure](s/Structure.md) * [Structure_threader](s/Structure_threader.md) * [STRUMPACK](s/STRUMPACK.md) @@ -2734,29 +2679,36 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [SUPPA](s/SUPPA.md) * [Suppressor](s/Suppressor.md) * [SURVIVOR](s/SURVIVOR.md) + * [SvABA](s/SvABA.md) * [SVclone](s/SVclone.md) * [SVDSS2](s/SVDSS2.md) * [SVG](s/SVG.md) * [SVIM](s/SVIM.md) * [svist4get](s/svist4get.md) * [SVT-AV1](s/SVT-AV1.md) + * [SWASH](s/SWASH.md) + * [sway](s/sway.md) * [SWI-Prolog](s/SWI-Prolog.md) * [SWIG](s/SWIG.md) * [SymEngine](s/SymEngine.md) * [SymEngine-python](s/SymEngine-python.md) + * [SymFPU](s/SymFPU.md) * [SYMMETRICA](s/SYMMETRICA.md) * [SYMPHONY](s/SYMPHONY.md) * [sympy](s/sympy.md) * [synapseclient](s/synapseclient.md) * [synthcity](s/synthcity.md) * [sysbench](s/sysbench.md) + * [SYSMOIC](s/SYSMOIC.md) * [Szip](s/Szip.md) * [t](t/index.md) * [T-Coffee](t/T-Coffee.md) * [t-SNE-CUDA](t/t-SNE-CUDA.md) * [tabix](t/tabix.md) * [tabixpp](t/tabixpp.md) + * [table2asn](t/table2asn.md) * [TAMkin](t/TAMkin.md) + * [tangram-sc](t/tangram-sc.md) * [tantan](t/tantan.md) * [Tapenade](t/Tapenade.md) * [task-spooler](t/task-spooler.md) @@ -2777,8 +2729,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [tensorboardX](t/tensorboardX.md) * [TensorFlow](t/TensorFlow.md) * [tensorflow-compression](t/tensorflow-compression.md) - * [TensorFlow-Datasets](t/TensorFlow-Datasets.md) - * [TensorFlow-Graphics](t/TensorFlow-Graphics.md) * [tensorflow-probability](t/tensorflow-probability.md) * [TensorRT](t/TensorRT.md) * [tensorstore](t/tensorstore.md) @@ -2795,9 +2745,9 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [text-unidecode](t/text-unidecode.md) * [TF-COMB](t/TF-COMB.md) * [TGS-GapCloser](t/TGS-GapCloser.md) - * [Theano](t/Theano.md) * [thirdorder](t/thirdorder.md) * [THOP](t/THOP.md) + * [TIDDIT](t/TIDDIT.md) * [tidymodels](t/tidymodels.md) * [tiktoken](t/tiktoken.md) * [time](t/time.md) @@ -2813,10 +2763,9 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [tinyxml2](t/tinyxml2.md) * [Tk](t/Tk.md) * [Tkinter](t/Tkinter.md) + * [tllist](t/tllist.md) * [tlparse](t/tlparse.md) * [TM-align](t/TM-align.md) - * [tMAE](t/tMAE.md) - * [tmap](t/tmap.md) * [tmpi](t/tmpi.md) * [tmux](t/tmux.md) * [TOBIAS](t/TOBIAS.md) @@ -2849,6 +2798,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [TRAVIS-Analyzer](t/TRAVIS-Analyzer.md) * [tree-sitter](t/tree-sitter.md) * [TreeMix](t/TreeMix.md) + * [treePL](t/treePL.md) * [treeseg](t/treeseg.md) * [TRF](t/TRF.md) * [Triangle](t/Triangle.md) @@ -2859,7 +2809,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Trimmomatic](t/Trimmomatic.md) * [Trinity](t/Trinity.md) * [Trinotate](t/Trinotate.md) - * [Triplexator](t/Triplexator.md) * [TRIQS](t/TRIQS.md) * [TRIQS-cthyb](t/TRIQS-cthyb.md) * [TRIQS-dft_tools](t/TRIQS-dft_tools.md) @@ -2868,6 +2817,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [Triton](t/Triton.md) * [TRL](t/TRL.md) * [tRNAscan-SE](t/tRNAscan-SE.md) + * [trove-classifiers](t/trove-classifiers.md) * [TRUST4](t/TRUST4.md) * [trusTEr](t/trusTEr.md) * [Trycycler](t/Trycycler.md) @@ -2888,7 +2838,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [UCX](u/UCX.md) * [UCX-CUDA](u/UCX-CUDA.md) * [ucx-py](u/ucx-py.md) - * [UCX-ROCm](u/UCX-ROCm.md) * [UDA](u/UDA.md) * [UDUNITS](u/UDUNITS.md) * [UFCG](u/UFCG.md) @@ -2897,7 +2846,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [UMI-tools](u/UMI-tools.md) * [Umpire](u/Umpire.md) * [uncertainties](u/uncertainties.md) - * [uncertainty-calibration](u/uncertainty-calibration.md) * [uncrustify](u/uncrustify.md) * [Underworld](u/Underworld.md) * [Uni-Core](u/Uni-Core.md) @@ -2912,7 +2860,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [UnZip](u/UnZip.md) * [USalign](u/USalign.md) * [USEARCH](u/USEARCH.md) - * [UShER](u/UShER.md) * [utf8proc](u/utf8proc.md) * [uthash](u/uthash.md) * [util-linux](u/util-linux.md) @@ -2921,12 +2868,12 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [vaeda](v/vaeda.md) * [Vala](v/Vala.md) * [Valgrind](v/Valgrind.md) - * [Vamb](v/Vamb.md) * [VAMPIRE-ASM](v/VAMPIRE-ASM.md) * [VarScan](v/VarScan.md) * [VASP](v/VASP.md) * [VASPKIT](v/VASPKIT.md) * [VBZ-Compression](v/VBZ-Compression.md) + * [VCF2Dis](v/VCF2Dis.md) * [vcflib](v/vcflib.md) * [VCFtools](v/VCFtools.md) * [vConTACT2](v/vConTACT2.md) @@ -2934,6 +2881,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [VeloxChem](v/VeloxChem.md) * [Velvet](v/Velvet.md) * [VEP](v/VEP.md) + * [verifyBamID](v/verifyBamID.md) * [Verkko](v/Verkko.md) * [versioningit](v/versioningit.md) * [VESTA](v/VESTA.md) @@ -2941,7 +2889,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [vigra](v/vigra.md) * [Vim](v/Vim.md) * [vireoSNP](v/vireoSNP.md) - * [VirSorter](v/VirSorter.md) * [VirSorter2](v/VirSorter2.md) * [virtualenv](v/virtualenv.md) * [VirtualGL](v/VirtualGL.md) @@ -2956,13 +2903,11 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [vitessceR](v/vitessceR.md) * [vLLM](v/vLLM.md) * [VMD](v/VMD.md) - * [vorbis-tools](v/vorbis-tools.md) * [Voro++](v/Voro++.md) * [vRhyme](v/vRhyme.md) * [vsc-mympirun](v/vsc-mympirun.md) * [VSCode](v/VSCode.md) * [VSEARCH](v/VSEARCH.md) - * [vt](v/vt.md) * [VTE](v/VTE.md) * [VTK](v/VTK.md) * [VTune](v/VTune.md) @@ -2986,7 +2931,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [wfdb](w/wfdb.md) * [WGDgc](w/WGDgc.md) * [wget](w/wget.md) - * [wgsim](w/wgsim.md) * [WhatsHap](w/WhatsHap.md) * [Whisper](w/Whisper.md) * [whisper-ctranslate2](w/whisper-ctranslate2.md) @@ -3039,6 +2983,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [XPLOR-NIH](x/XPLOR-NIH.md) * [xprop](x/xprop.md) * [xproto](x/xproto.md) + * [xraylib](x/xraylib.md) * [xschem](x/xschem.md) * [xskillscore](x/xskillscore.md) * [xtb](x/xtb.md) @@ -3047,6 +2992,7 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [xterm](x/xterm.md) * [xtrans](x/xtrans.md) * [Xvfb](x/Xvfb.md) + * [Xwayland](x/Xwayland.md) * [xxd](x/xxd.md) * [xxHash](x/xxHash.md) * [XZ](x/XZ.md) @@ -3055,7 +3001,6 @@ EasyBuild supports 3049 different software packages (incl. toolchains, bundles): * [YACS](y/YACS.md) * [yaff](y/yaff.md) * [YaHS](y/YaHS.md) - * [Yambo](y/Yambo.md) * [yaml-cpp](y/yaml-cpp.md) * [Yasm](y/Yasm.md) * [YAXT](y/YAXT.md) diff --git a/docs/version-specific/supported-software/j/JAGS.md b/docs/version-specific/supported-software/j/JAGS.md index 4f8e0722ac..ccfd42cb9a 100644 --- a/docs/version-specific/supported-software/j/JAGS.md +++ b/docs/version-specific/supported-software/j/JAGS.md @@ -10,7 +10,6 @@ JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian h version | toolchain --------|---------- -``4.3.0`` | ``foss/2021b`` ``4.3.1`` | ``foss/2022a`` ``4.3.2`` | ``foss/2022b`` ``4.3.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/c/corner.md b/docs/version-specific/supported-software/j/JPype.md similarity index 83% rename from docs/version-specific/supported-software/c/corner.md rename to docs/version-specific/supported-software/j/JPype.md index 11c38fadb1..b79e7e7f7f 100644 --- a/docs/version-specific/supported-software/c/corner.md +++ b/docs/version-specific/supported-software/j/JPype.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# corner +# JPype -Make some beautiful corner plots. +A Python module to provide full access to Java from within Python -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.2.2`` | ``foss/2021b`` +``1.5.0`` | ``gfbf/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/Jansson.md b/docs/version-specific/supported-software/j/Jansson.md index 26c236cb45..4db1cdf982 100644 --- a/docs/version-specific/supported-software/j/Jansson.md +++ b/docs/version-specific/supported-software/j/Jansson.md @@ -10,7 +10,6 @@ Jansson is a C library for encoding, decoding and manipulating JSON data. Its m version | toolchain --------|---------- -``2.13.1`` | ``GCC/11.2.0`` ``2.14`` | ``GCC/11.3.0`` ``2.14`` | ``GCC/12.3.0`` ``2.14.1`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/j/JasPer.md b/docs/version-specific/supported-software/j/JasPer.md index afb36f851e..10d62418fb 100644 --- a/docs/version-specific/supported-software/j/JasPer.md +++ b/docs/version-specific/supported-software/j/JasPer.md @@ -10,7 +10,6 @@ The JasPer Project is an open-source initiative to provide a free software-base version | toolchain --------|---------- -``2.0.33`` | ``GCCcore/11.2.0`` ``2.0.33`` | ``GCCcore/11.3.0`` ``4.0.0`` | ``GCCcore/12.2.0`` ``4.0.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/j/Jasmine.md b/docs/version-specific/supported-software/j/Jasmine.md deleted file mode 100644 index ab9d80fd53..0000000000 --- a/docs/version-specific/supported-software/j/Jasmine.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Jasmine - -SV Merging Across Samples - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.4`` | ``-Java-15`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/j/Jellyfish.md b/docs/version-specific/supported-software/j/Jellyfish.md index 939fe37d43..8973aee542 100644 --- a/docs/version-specific/supported-software/j/Jellyfish.md +++ b/docs/version-specific/supported-software/j/Jellyfish.md @@ -10,7 +10,6 @@ Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. version | toolchain --------|---------- -``2.3.0`` | ``GCC/11.2.0`` ``2.3.0`` | ``GCC/11.3.0`` ``2.3.0`` | ``GCC/12.2.0`` ``2.3.1`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/j/JsonCpp.md b/docs/version-specific/supported-software/j/JsonCpp.md index d202c3e5cb..b4ee126b36 100644 --- a/docs/version-specific/supported-software/j/JsonCpp.md +++ b/docs/version-specific/supported-software/j/JsonCpp.md @@ -10,7 +10,6 @@ JsonCpp is a C++ library that allows manipulating JSON values, including serial version | toolchain --------|---------- -``1.9.4`` | ``GCCcore/11.2.0`` ``1.9.5`` | ``GCCcore/11.3.0`` ``1.9.5`` | ``GCCcore/12.2.0`` ``1.9.5`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/j/Judy.md b/docs/version-specific/supported-software/j/Judy.md index 9eecde3dab..b0dde8649d 100644 --- a/docs/version-specific/supported-software/j/Judy.md +++ b/docs/version-specific/supported-software/j/Judy.md @@ -10,13 +10,13 @@ A C library that implements a dynamic array. version | toolchain --------|---------- -``1.0.5`` | ``GCCcore/11.2.0`` ``1.0.5`` | ``GCCcore/11.3.0`` ``1.0.5`` | ``GCCcore/12.2.0`` ``1.0.5`` | ``GCCcore/12.3.0`` ``1.0.5`` | ``GCCcore/13.2.0`` ``1.0.5`` | ``GCCcore/13.3.0`` ``1.0.5`` | ``GCCcore/14.2.0`` +``1.0.5`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/Julia.md b/docs/version-specific/supported-software/j/Julia.md index b53511b02d..08d12145be 100644 --- a/docs/version-specific/supported-software/j/Julia.md +++ b/docs/version-specific/supported-software/j/Julia.md @@ -19,7 +19,6 @@ version | versionsuffix | toolchain ``1.11.6`` | ``-linux-x86_64`` | ``system`` ``1.11.7`` | | ``system`` ``1.12.2`` | | ``system`` -``1.5.3`` | ``-linux-x86_64`` | ``system`` ``1.6.0`` | ``-linux-aarch64`` | ``system`` ``1.6.1`` | ``-linux-x86_64`` | ``system`` ``1.6.2`` | ``-linux-x86_64`` | ``system`` diff --git a/docs/version-specific/supported-software/j/JupyterLab-NVdashboard.md b/docs/version-specific/supported-software/j/JupyterLab-NVdashboard.md new file mode 100644 index 0000000000..abb1fab343 --- /dev/null +++ b/docs/version-specific/supported-software/j/JupyterLab-NVdashboard.md @@ -0,0 +1,19 @@ +--- +search: + boost: 0.5 +--- +# JupyterLab-NVdashboard + +NVDashboard is a JupyterLab extension for displaying GPU usage dashboards. It enables JupyterLab users to visualize system hardware metrics within the same interactive environment they use for development. + +*homepage*: + +version | toolchain +--------|---------- +``0.12.0`` | ``GCCcore/13.3.0`` +``0.13.0`` | ``GCCcore/14.2.0`` +``0.13.0`` | ``GCCcore/14.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/j/JupyterLab.md b/docs/version-specific/supported-software/j/JupyterLab.md index 7849c4ac5c..b9cd394acb 100644 --- a/docs/version-specific/supported-software/j/JupyterLab.md +++ b/docs/version-specific/supported-software/j/JupyterLab.md @@ -10,7 +10,6 @@ JupyterLab is the next-generation user interface for Project Jupyter offering al version | toolchain --------|---------- -``3.1.6`` | ``GCCcore/11.2.0`` ``3.5.0`` | ``GCCcore/11.3.0`` ``4.0.3`` | ``GCCcore/12.2.0`` ``4.0.5`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/j/index.md b/docs/version-specific/supported-software/j/index.md index 5e08b940b7..0f7e305512 100644 --- a/docs/version-specific/supported-software/j/index.md +++ b/docs/version-specific/supported-software/j/index.md @@ -12,7 +12,6 @@ search: * [JACUSA2helper](JACUSA2helper.md) * [JAGS](JAGS.md) * [Jansson](Jansson.md) - * [Jasmine](Jasmine.md) * [JasPer](JasPer.md) * [Java](Java.md) * [jax](jax.md) @@ -29,6 +28,7 @@ search: * [Jmol](Jmol.md) * [joypy](joypy.md) * [JPEG-NCCS](JPEG-NCCS.md) + * [JPype](JPype.md) * [jq](jq.md) * [json-c](json-c.md) * [json-fortran](json-fortran.md) @@ -41,6 +41,7 @@ search: * [Julia](Julia.md) * [juliaup](juliaup.md) * [junos-eznc](junos-eznc.md) + * [jupyter-bash-kernel](jupyter-bash-kernel.md) * [Jupyter-bundle](Jupyter-bundle.md) * [jupyter-collaboration](jupyter-collaboration.md) * [jupyter-contrib-nbextensions](jupyter-contrib-nbextensions.md) @@ -56,6 +57,7 @@ search: * [JupyterLab-git](JupyterLab-git.md) * [jupyterlab-h5web](jupyterlab-h5web.md) * [jupyterlab-lmod](jupyterlab-lmod.md) + * [JupyterLab-NVdashboard](JupyterLab-NVdashboard.md) * [jupyterlmod](jupyterlmod.md) * [JupyterNotebook](JupyterNotebook.md) * [jupyterview](jupyterview.md) diff --git a/docs/version-specific/supported-software/j/jax.md b/docs/version-specific/supported-software/j/jax.md index a40bc24c27..5c0860cd3c 100644 --- a/docs/version-specific/supported-software/j/jax.md +++ b/docs/version-specific/supported-software/j/jax.md @@ -11,7 +11,6 @@ Composable transformations of Python+NumPy programs: differentiate, vectorize, J version | versionsuffix | toolchain --------|---------------|---------- ``0.3.14`` | ``-CUDA-11.7.0`` | ``foss/2022a`` -``0.3.23`` | ``-CUDA-11.4.1`` | ``foss/2021b`` ``0.3.23`` | | ``foss/2022a`` ``0.3.25`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.3.25`` | | ``foss/2022a`` @@ -21,7 +20,9 @@ version | versionsuffix | toolchain ``0.4.4`` | | ``foss/2022a`` ``0.6.2`` | ``-CUDA-12.6.0`` | ``gfbf/2024a`` ``0.6.2`` | | ``gfbf/2024a`` +``0.7.0`` | ``-CUDA-12.8.0`` | ``gfbf/2025a`` ``0.7.0`` | | ``gfbf/2025a`` +``0.8.1`` | | ``gfbf/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/jbigkit.md b/docs/version-specific/supported-software/j/jbigkit.md index dfd388a6f7..57d8efc972 100644 --- a/docs/version-specific/supported-software/j/jbigkit.md +++ b/docs/version-specific/supported-software/j/jbigkit.md @@ -10,7 +10,6 @@ JBIG-KIT is a software implementation of the JBIG1 data compression standard (I version | toolchain --------|---------- -``2.1`` | ``GCCcore/11.2.0`` ``2.1`` | ``GCCcore/11.3.0`` ``2.1`` | ``GCCcore/12.2.0`` ``2.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/j/jemalloc.md b/docs/version-specific/supported-software/j/jemalloc.md index 4feac9ecf6..b0a3aa2756 100644 --- a/docs/version-specific/supported-software/j/jemalloc.md +++ b/docs/version-specific/supported-software/j/jemalloc.md @@ -10,7 +10,6 @@ jemalloc is a general purpose malloc(3) implementation that emphasizes fragmenta version | toolchain --------|---------- -``5.2.1`` | ``GCCcore/11.2.0`` ``5.2.1`` | ``GCCcore/11.3.0`` ``5.3.0`` | ``GCCcore/11.3.0`` ``5.3.0`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/j/jq.md b/docs/version-specific/supported-software/j/jq.md index 6af1799690..a11fdc824e 100644 --- a/docs/version-specific/supported-software/j/jq.md +++ b/docs/version-specific/supported-software/j/jq.md @@ -10,12 +10,12 @@ jq is a lightweight and flexible command-line JSON processor. version | toolchain --------|---------- -``1.6`` | ``GCCcore/11.2.0`` ``1.6`` | ``GCCcore/11.3.0`` ``1.6`` | ``GCCcore/12.2.0`` ``1.6`` | ``GCCcore/12.3.0`` ``1.7.1`` | ``GCCcore/13.2.0`` ``1.7.1`` | ``GCCcore/13.3.0`` +``1.8.1`` | ``GCCcore/14.2.0`` ``1.8.1`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/j/json-c.md b/docs/version-specific/supported-software/j/json-c.md index 02935f7d30..63e633a339 100644 --- a/docs/version-specific/supported-software/j/json-c.md +++ b/docs/version-specific/supported-software/j/json-c.md @@ -10,7 +10,6 @@ JSON-C implements a reference counting object model that allows you to easily co version | toolchain --------|---------- -``0.15`` | ``GCCcore/11.2.0`` ``0.16`` | ``GCCcore/11.3.0`` ``0.16`` | ``GCCcore/12.2.0`` ``0.16`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/j/json-fortran.md b/docs/version-specific/supported-software/j/json-fortran.md index ff6c78575c..978d414c77 100644 --- a/docs/version-specific/supported-software/j/json-fortran.md +++ b/docs/version-specific/supported-software/j/json-fortran.md @@ -10,10 +10,8 @@ JSON-Fortran: A Modern Fortran JSON API version | toolchain --------|---------- -``8.3.0`` | ``GCC/11.2.0`` ``8.3.0`` | ``GCC/11.3.0`` ``8.3.0`` | ``GCC/12.2.0`` -``8.3.0`` | ``intel-compilers/2022.0.1`` ``8.3.0`` | ``intel-compilers/2022.1.0`` ``8.3.0`` | ``intel-compilers/2022.2.1`` ``8.5.2`` | ``GCC/13.2.0`` @@ -25,6 +23,7 @@ version | toolchain ``9.0.5`` | ``GCC/14.2.0`` ``9.0.5`` | ``GCC/14.3.0`` ``9.0.5`` | ``intel-compilers/2025.1.1`` +``9.2.1`` | ``intel-compilers/2025.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/j/jupyter-bash-kernel.md b/docs/version-specific/supported-software/j/jupyter-bash-kernel.md new file mode 100644 index 0000000000..879ba917ec --- /dev/null +++ b/docs/version-specific/supported-software/j/jupyter-bash-kernel.md @@ -0,0 +1,20 @@ +--- +search: + boost: 0.5 +--- +# jupyter-bash-kernel + +A Jupyter kernel for bash + +*homepage*: + +version | toolchain +--------|---------- +``0.10.0`` | ``GCCcore/14.3.0`` +``0.9.3`` | ``GCCcore/12.3.0`` +``0.9.3`` | ``GCCcore/13.3.0`` +``0.9.3`` | ``GCCcore/14.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/k/KMC.md b/docs/version-specific/supported-software/k/KMC.md index fc7d834a71..fac3f3df77 100644 --- a/docs/version-specific/supported-software/k/KMC.md +++ b/docs/version-specific/supported-software/k/KMC.md @@ -8,15 +8,13 @@ KMC is a disk-based program for counting k-mers from (possibly gzipped) FASTQ/FA *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``3.2.1`` | ``-Python-2.7.18`` | ``GCC/11.2.0`` -``3.2.1`` | | ``GCC/11.2.0`` -``3.2.2`` | | ``GCC/12.2.0`` -``3.2.4`` | | ``GCC/13.2.0`` -``3.2.4`` | | ``GCC/13.3.0`` -``3.2.4`` | | ``GCC/14.3.0`` -``3.2.4`` | | ``intel-compilers/2025.2.0`` +version | toolchain +--------|---------- +``3.2.2`` | ``GCC/12.2.0`` +``3.2.4`` | ``GCC/13.2.0`` +``3.2.4`` | ``GCC/13.3.0`` +``3.2.4`` | ``GCC/14.3.0`` +``3.2.4`` | ``intel-compilers/2025.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/k/Kaleido.md b/docs/version-specific/supported-software/k/Kaleido.md index 8cafa042ae..18a115c2c7 100644 --- a/docs/version-specific/supported-software/k/Kaleido.md +++ b/docs/version-specific/supported-software/k/Kaleido.md @@ -15,6 +15,7 @@ version | toolchain ``0.2.1`` | ``GCCcore/12.3.0`` ``0.2.1`` | ``GCCcore/13.2.0`` ``0.2.1`` | ``GCCcore/13.3.0`` +``0.2.1`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/k/Kalign.md b/docs/version-specific/supported-software/k/Kalign.md index ec42912681..48350fcf0a 100644 --- a/docs/version-specific/supported-software/k/Kalign.md +++ b/docs/version-specific/supported-software/k/Kalign.md @@ -10,7 +10,6 @@ Kalign is a fast multiple sequence alignment program for biological sequences. version | toolchain --------|---------- -``3.3.2`` | ``GCCcore/11.2.0`` ``3.3.5`` | ``GCCcore/11.3.0`` ``3.4.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/k/Kent_tools.md b/docs/version-specific/supported-software/k/Kent_tools.md index 182e583762..5ab191851e 100644 --- a/docs/version-specific/supported-software/k/Kent_tools.md +++ b/docs/version-specific/supported-software/k/Kent_tools.md @@ -10,7 +10,6 @@ Kent utilities: collection of tools used by the UCSC genome browser. version | toolchain --------|---------- -``422`` | ``GCC/11.2.0`` ``442`` | ``GCC/11.3.0`` ``457`` | ``GCC/12.2.0`` ``461`` | ``GCC/12.2.0`` diff --git a/docs/version-specific/supported-software/k/Kraken2.md b/docs/version-specific/supported-software/k/Kraken2.md index f5b8fa6991..85b39adf71 100644 --- a/docs/version-specific/supported-software/k/Kraken2.md +++ b/docs/version-specific/supported-software/k/Kraken2.md @@ -10,7 +10,6 @@ Kraken is a system for assigning taxonomic labels to short DNA sequences, usual version | toolchain --------|---------- -``2.1.2`` | ``gompi/2021b`` ``2.1.2`` | ``gompi/2022a`` ``2.1.3`` | ``gompi/2023a`` ``2.1.4`` | ``gompi/2024a`` diff --git a/docs/version-specific/supported-software/k/KrakenUniq.md b/docs/version-specific/supported-software/k/KrakenUniq.md index c5df84e2aa..bddc4cdcd7 100644 --- a/docs/version-specific/supported-software/k/KrakenUniq.md +++ b/docs/version-specific/supported-software/k/KrakenUniq.md @@ -13,6 +13,7 @@ version | toolchain ``1.0.3`` | ``GCC/11.3.0`` ``1.0.4`` | ``GCC/12.2.0`` ``1.0.4`` | ``GCC/12.3.0`` +``1.0.4`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/k/KronaTools.md b/docs/version-specific/supported-software/k/KronaTools.md index 9a60a43ca5..44452a38cb 100644 --- a/docs/version-specific/supported-software/k/KronaTools.md +++ b/docs/version-specific/supported-software/k/KronaTools.md @@ -10,7 +10,6 @@ Krona Tools is a set of scripts to create Krona charts from several Bioinformati version | toolchain --------|---------- -``2.8.1`` | ``GCCcore/11.2.0`` ``2.8.1`` | ``GCCcore/11.3.0`` ``2.8.1`` | ``GCCcore/12.2.0`` ``2.8.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/k/index.md b/docs/version-specific/supported-software/k/index.md index e0d7772776..e8d95ba73b 100644 --- a/docs/version-specific/supported-software/k/index.md +++ b/docs/version-specific/supported-software/k/index.md @@ -8,6 +8,7 @@ search: + * [k-Wave-python](k-Wave-python.md) * [k8](k8.md) * [kaggle](kaggle.md) * [KaHIP](KaHIP.md) @@ -33,6 +34,7 @@ search: * [koopmans-qe-utils](koopmans-qe-utils.md) * [Kornia](Kornia.md) * [Kraken](Kraken.md) + * [kraken-OCR](kraken-OCR.md) * [Kraken2](Kraken2.md) * [KrakenTools](KrakenTools.md) * [KrakenUniq](KrakenUniq.md) diff --git a/docs/version-specific/supported-software/k/k-Wave-python.md b/docs/version-specific/supported-software/k/k-Wave-python.md new file mode 100644 index 0000000000..679d93050d --- /dev/null +++ b/docs/version-specific/supported-software/k/k-Wave-python.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# k-Wave-python + +This project is a Python implementation of v1.4.0 of the MATLAB toolbox k-Wave: http://www.k-wave.org/ as well as an interface to the pre-compiled v1.3 of k-Wave simulation binaries, which support NVIDIA sm 5.0 (Maxwell) to sm 9.0a (Hopper) GPUs. + +*homepage*: + +version | toolchain +--------|---------- +``0.4.0`` | ``foss/2025a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/k/kallisto.md b/docs/version-specific/supported-software/k/kallisto.md index 4d7ca0fef3..5f208cd10f 100644 --- a/docs/version-specific/supported-software/k/kallisto.md +++ b/docs/version-specific/supported-software/k/kallisto.md @@ -10,7 +10,6 @@ kallisto is a program for quantifying abundances of transcripts from RNA-Seq dat version | toolchain --------|---------- -``0.48.0`` | ``gompi/2021b`` ``0.48.0`` | ``gompi/2022a`` ``0.50.1`` | ``gompi/2022b`` ``0.51.1`` | ``gompi/2023a`` diff --git a/docs/version-specific/supported-software/k/kb-python.md b/docs/version-specific/supported-software/k/kb-python.md index 987f769882..029903ed78 100644 --- a/docs/version-specific/supported-software/k/kb-python.md +++ b/docs/version-specific/supported-software/k/kb-python.md @@ -10,7 +10,6 @@ kallisto | bustools is a workflow for pre-processing single-cell RNA-seq data. version | toolchain --------|---------- -``0.27.3`` | ``foss/2021b`` ``0.27.3`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/k/kim-api.md b/docs/version-specific/supported-software/k/kim-api.md index 147a449a04..66d5067af2 100644 --- a/docs/version-specific/supported-software/k/kim-api.md +++ b/docs/version-specific/supported-software/k/kim-api.md @@ -10,7 +10,6 @@ Open Knowledgebase of Interatomic Models. KIM is an API and OpenKIM is a collec version | toolchain --------|---------- -``2.3.0`` | ``GCC/11.2.0`` ``2.3.0`` | ``GCC/11.3.0`` ``2.3.0`` | ``GCC/12.2.0`` ``2.3.0`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/c/cromwell.md b/docs/version-specific/supported-software/k/kraken-OCR.md similarity index 75% rename from docs/version-specific/supported-software/c/cromwell.md rename to docs/version-specific/supported-software/k/kraken-OCR.md index fdcfcd6a17..11521e74db 100644 --- a/docs/version-specific/supported-software/c/cromwell.md +++ b/docs/version-specific/supported-software/k/kraken-OCR.md @@ -2,15 +2,16 @@ search: boost: 0.5 --- -# cromwell +# kraken-OCR -Cromwell is a Workflow Management System geared towards scientific workflows. +kraken is a turn-key OCR system optimized for historical and non-Latin script material. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``56`` | ``-Java-11`` | ``system`` +``5.2.9`` | ``-CUDA-12.1.1`` | ``foss/2023a`` +``5.2.9`` | | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LAME.md b/docs/version-specific/supported-software/l/LAME.md index 7e092e4a2e..5774b17102 100644 --- a/docs/version-specific/supported-software/l/LAME.md +++ b/docs/version-specific/supported-software/l/LAME.md @@ -10,7 +10,6 @@ LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGP version | toolchain --------|---------- -``3.100`` | ``GCCcore/11.2.0`` ``3.100`` | ``GCCcore/11.3.0`` ``3.100`` | ``GCCcore/12.2.0`` ``3.100`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/LAMMPS.md b/docs/version-specific/supported-software/l/LAMMPS.md index 49e04e5faa..1331dd5a3b 100644 --- a/docs/version-specific/supported-software/l/LAMMPS.md +++ b/docs/version-specific/supported-software/l/LAMMPS.md @@ -12,8 +12,6 @@ version | versionsuffix | toolchain --------|---------------|---------- ``22Jul2025`` | ``-kokkos-CUDA-12.6.0`` | ``foss/2024a`` ``22Jul2025`` | ``-kokkos`` | ``foss/2024a`` -``23Jun2022`` | ``-kokkos-CUDA-11.4.1`` | ``foss/2021b`` -``23Jun2022`` | ``-kokkos`` | ``foss/2021b`` ``23Jun2022`` | ``-kokkos`` | ``foss/2022a`` ``28Oct2024`` | ``-kokkos-mace-CUDA-12.1.1`` | ``foss/2023a`` ``29Aug2024`` | ``-kokkos`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/l/LAPACK.md b/docs/version-specific/supported-software/l/LAPACK.md index f3686fd998..5ed8ad0ca0 100644 --- a/docs/version-specific/supported-software/l/LAPACK.md +++ b/docs/version-specific/supported-software/l/LAPACK.md @@ -10,7 +10,6 @@ LAPACK is written in Fortran90 and provides routines for solving systems of sim version | toolchain --------|---------- -``3.10.1`` | ``GCC/11.2.0`` ``3.10.1`` | ``GCC/11.3.0`` ``3.12.0`` | ``GCC/12.3.0`` ``3.12.0`` | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/l/LDhelmet.md b/docs/version-specific/supported-software/l/LDhelmet.md new file mode 100644 index 0000000000..55a43885e6 --- /dev/null +++ b/docs/version-specific/supported-software/l/LDhelmet.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# LDhelmet + +LDhelmet is a software program for statistical inference of fine-scale crossover recombination rates from population genetic data. LDhelmet expects the input data to be phased and aligned DNA sequences. The statistical model assumes the sample of DNA sequences is randomly drawn from a single population, and that the population followed a neutral evolution with constant population size. However, the statistical inference can still be accurate even with mild deviations from these assumptions. LDhelmet can handle sample sizes of up to 50 individuals (haplotypes), and is suitable for whole-genome sequence analysis. + +*homepage*: + +version | toolchain +--------|---------- +``1.10`` | ``GCC/14.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/LDpop.md b/docs/version-specific/supported-software/l/LDpop.md new file mode 100644 index 0000000000..eb1488e2e6 --- /dev/null +++ b/docs/version-specific/supported-software/l/LDpop.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# LDpop + +LDpop is a program for computing 2-locus likelihoods under the coalescent with recombination. Unlike previous methods, LDpop can correctly account for variable (but piecewise-constant) population size history. + +*homepage*: + +version | toolchain +--------|---------- +``1.0.2`` | ``gfbf/2025a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/LIBSVM.md b/docs/version-specific/supported-software/l/LIBSVM.md index b5bc87e628..381ca5723f 100644 --- a/docs/version-specific/supported-software/l/LIBSVM.md +++ b/docs/version-specific/supported-software/l/LIBSVM.md @@ -10,7 +10,6 @@ LIBSVM is an integrated software for support vector classification, (C-SVC, nu-S version | toolchain --------|---------- -``3.25`` | ``GCCcore/11.2.0`` ``3.30`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/l/LLVM.md b/docs/version-specific/supported-software/l/LLVM.md index 7feed6d213..93cd8c1808 100644 --- a/docs/version-specific/supported-software/l/LLVM.md +++ b/docs/version-specific/supported-software/l/LLVM.md @@ -10,7 +10,6 @@ The LLVM Core libraries provide a modern source- and target-independent optimiz version | versionsuffix | toolchain --------|---------------|---------- -``12.0.1`` | | ``GCCcore/11.2.0`` ``14.0.3`` | | ``GCCcore/11.3.0`` ``14.0.6`` | ``-llvmlite`` | ``GCCcore/12.2.0`` ``14.0.6`` | ``-llvmlite`` | ``GCCcore/12.3.0`` @@ -27,6 +26,7 @@ version | versionsuffix | toolchain ``20.1.5`` | | ``GCCcore/13.3.0`` ``20.1.7`` | | ``GCCcore/14.2.0`` ``20.1.8`` | | ``GCCcore/14.3.0`` +``21.1.8`` | | ``GCCcore/15.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LMDB.md b/docs/version-specific/supported-software/l/LMDB.md index 853f2b3d11..0b511269fb 100644 --- a/docs/version-specific/supported-software/l/LMDB.md +++ b/docs/version-specific/supported-software/l/LMDB.md @@ -10,7 +10,6 @@ LMDB is a fast, memory-efficient database. With memory-mapped files, it has the version | toolchain --------|---------- -``0.9.29`` | ``GCCcore/11.2.0`` ``0.9.29`` | ``GCCcore/11.3.0`` ``0.9.29`` | ``GCCcore/12.2.0`` ``0.9.31`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/LMfit.md b/docs/version-specific/supported-software/l/LMfit.md index 300757d658..b6827e9ee8 100644 --- a/docs/version-specific/supported-software/l/LMfit.md +++ b/docs/version-specific/supported-software/l/LMfit.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``1.0.3`` | ``foss/2022a`` ``1.0.3`` | ``intel/2022a`` -``1.2.1`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/LSD2.md b/docs/version-specific/supported-software/l/LSD2.md index dd7f2c6daf..bee7a05d17 100644 --- a/docs/version-specific/supported-software/l/LSD2.md +++ b/docs/version-specific/supported-software/l/LSD2.md @@ -10,7 +10,6 @@ Least-squares methods to estimate rates and dates from phylogenies version | toolchain --------|---------- -``2.3`` | ``GCCcore/11.2.0`` ``2.3`` | ``GCCcore/11.3.0`` ``2.4.1`` | ``GCCcore/12.2.0`` ``2.4.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/LZO.md b/docs/version-specific/supported-software/l/LZO.md index adda7e74ee..da7904b242 100644 --- a/docs/version-specific/supported-software/l/LZO.md +++ b/docs/version-specific/supported-software/l/LZO.md @@ -10,7 +10,6 @@ Portable lossless data compression library version | toolchain --------|---------- -``2.10`` | ``GCCcore/11.2.0`` ``2.10`` | ``GCCcore/11.3.0`` ``2.10`` | ``GCCcore/12.2.0`` ``2.10`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/LibSoup.md b/docs/version-specific/supported-software/l/LibSoup.md index 5fba634e73..e712fc9f7c 100644 --- a/docs/version-specific/supported-software/l/LibSoup.md +++ b/docs/version-specific/supported-software/l/LibSoup.md @@ -10,7 +10,6 @@ libsoup is an HTTP client/server library for GNOME. It uses GObjects and the gli version | toolchain --------|---------- -``3.0.7`` | ``GCC/11.2.0`` ``3.0.8`` | ``GCC/11.3.0`` ``3.6.1`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/l/LibTIFF.md b/docs/version-specific/supported-software/l/LibTIFF.md index 57b34434cd..a83e7cb7c6 100644 --- a/docs/version-specific/supported-software/l/LibTIFF.md +++ b/docs/version-specific/supported-software/l/LibTIFF.md @@ -10,7 +10,6 @@ tiff: Library and tools for reading and writing TIFF data files version | toolchain --------|---------- -``4.3.0`` | ``GCCcore/11.2.0`` ``4.3.0`` | ``GCCcore/11.3.0`` ``4.4.0`` | ``GCCcore/12.2.0`` ``4.5.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/Lighter.md b/docs/version-specific/supported-software/l/Lighter.md index 993fb045eb..e205d9b6ca 100644 --- a/docs/version-specific/supported-software/l/Lighter.md +++ b/docs/version-specific/supported-software/l/Lighter.md @@ -10,7 +10,6 @@ Fast and memory-efficient sequencing error corrector version | toolchain --------|---------- -``1.1.2`` | ``GCC/11.2.0`` ``1.1.3`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/l/LittleCMS.md b/docs/version-specific/supported-software/l/LittleCMS.md index a014393368..465b08c4ea 100644 --- a/docs/version-specific/supported-software/l/LittleCMS.md +++ b/docs/version-specific/supported-software/l/LittleCMS.md @@ -10,7 +10,6 @@ Little CMS intends to be an OPEN SOURCE small-footprint color management engine, version | toolchain --------|---------- -``2.12`` | ``GCCcore/11.2.0`` ``2.13.1`` | ``GCCcore/11.3.0`` ``2.14`` | ``GCCcore/12.2.0`` ``2.15`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/LocARNA.md b/docs/version-specific/supported-software/l/LocARNA.md deleted file mode 100644 index 8951f40811..0000000000 --- a/docs/version-specific/supported-software/l/LocARNA.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# LocARNA - -LocARNA is a collection of alignment tools for the structural analysis of RNA. Given a set of RNA sequences, LocARNA simultaneously aligns and predicts common structures for your RNAs. In this way, LocARNA performs Sankoff-like alignment and is in particular suited for analyzing sets of related RNAs without known common structure. - -*homepage*: - -version | toolchain ---------|---------- -``1.9.2.3`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/Lua.md b/docs/version-specific/supported-software/l/Lua.md index ff5b0782e2..dab4d67973 100644 --- a/docs/version-specific/supported-software/l/Lua.md +++ b/docs/version-specific/supported-software/l/Lua.md @@ -10,7 +10,6 @@ Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combin version | toolchain --------|---------- -``5.4.3`` | ``GCCcore/11.2.0`` ``5.4.4`` | ``GCCcore/11.3.0`` ``5.4.4`` | ``GCCcore/12.2.0`` ``5.4.6`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/index.md b/docs/version-specific/supported-software/l/index.md index e083922107..a6ebd11d81 100644 --- a/docs/version-specific/supported-software/l/index.md +++ b/docs/version-specific/supported-software/l/index.md @@ -10,6 +10,7 @@ search: * [L_RNA_scaffolder](L_RNA_scaffolder.md) * [Lab-Streaming-Layer](Lab-Streaming-Layer.md) + * [labwc](labwc.md) * [Lace](Lace.md) * [lagrangian-filtering](lagrangian-filtering.md) * [LAME](LAME.md) @@ -31,6 +32,8 @@ search: * [LCov](LCov.md) * [LDC](LDC.md) * [lDDT](lDDT.md) + * [LDhelmet](LDhelmet.md) + * [LDpop](LDpop.md) * [leafcutter](leafcutter.md) * [leidenalg](leidenalg.md) * [Lep-MAP3](Lep-MAP3.md) @@ -62,8 +65,10 @@ search: * [libconfig](libconfig.md) * [libcroco](libcroco.md) * [libdap](libdap.md) + * [libdbusmenu](libdbusmenu.md) * [libde265](libde265.md) * [libdeflate](libdeflate.md) + * [libdisplay-info](libdisplay-info.md) * [libdivsufsort](libdivsufsort.md) * [libdrm](libdrm.md) * [libdwarf](libdwarf.md) @@ -74,6 +79,7 @@ search: * [libepoxy](libepoxy.md) * [libetsf_io](libetsf_io.md) * [libev](libev.md) + * [libevdev](libevdev.md) * [libevent](libevent.md) * [libexif](libexif.md) * [libfabric](libfabric.md) @@ -82,7 +88,6 @@ search: * [libfyaml](libfyaml.md) * [libgcrypt](libgcrypt.md) * [libgd](libgd.md) - * [libgdiplus](libgdiplus.md) * [libGDSII](libGDSII.md) * [libgeotiff](libgeotiff.md) * [libgit2](libgit2.md) @@ -98,10 +103,12 @@ search: * [libiconv](libiconv.md) * [libidn](libidn.md) * [libidn2](libidn2.md) + * [libinput](libinput.md) * [Libint](Libint.md) * [libjpeg-turbo](libjpeg-turbo.md) * [libjxl](libjxl.md) * [libleidenalg](libleidenalg.md) + * [libliftoff](libliftoff.md) * [LibLZF](LibLZF.md) * [libmad](libmad.md) * [libmatheval](libmatheval.md) @@ -112,7 +119,6 @@ search: * [libneurosim](libneurosim.md) * [libnotify](libnotify.md) * [libnsl](libnsl.md) - * [libobjcryst](libobjcryst.md) * [libogg](libogg.md) * [libopus](libopus.md) * [libosmium](libosmium.md) @@ -132,6 +138,7 @@ search: * [librttopo](librttopo.md) * [libs3](libs3.md) * [libSBML](libSBML.md) + * [libsfdo](libsfdo.md) * [libsigc++](libsigc++.md) * [libsigsegv](libsigsegv.md) * [libslirp](libslirp.md) @@ -164,7 +171,6 @@ search: * [libvorbis](libvorbis.md) * [libvori](libvori.md) * [libvpx](libvpx.md) - * [libWallModelledLES](libWallModelledLES.md) * [libwebp](libwebp.md) * [libwebsockets](libwebsockets.md) * [libwnck](libwnck.md) @@ -203,7 +209,6 @@ search: * [lmpflf](lmpflf.md) * [lmpich](lmpich.md) * [LOBSTER](LOBSTER.md) - * [LocARNA](LocARNA.md) * [LofarStMan](LofarStMan.md) * [lohhla-mod](lohhla-mod.md) * [lompi](lompi.md) diff --git a/docs/version-specific/supported-software/l/labwc.md b/docs/version-specific/supported-software/l/labwc.md new file mode 100644 index 0000000000..35da96726f --- /dev/null +++ b/docs/version-specific/supported-software/l/labwc.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# labwc + +Labwc is a wlroots-based window-stacking compositor for Wayland, inspired by Openbox. + +*homepage*: + +version | toolchain +--------|---------- +``0.9.3`` | ``GCCcore/14.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/leidenalg.md b/docs/version-specific/supported-software/l/leidenalg.md index 7d6bb5f127..0a6d0fa54c 100644 --- a/docs/version-specific/supported-software/l/leidenalg.md +++ b/docs/version-specific/supported-software/l/leidenalg.md @@ -12,7 +12,7 @@ version | toolchain --------|---------- ``0.10.1`` | ``foss/2022b`` ``0.10.2`` | ``foss/2023a`` -``0.8.8`` | ``foss/2021b`` +``0.10.2`` | ``foss/2024a`` ``0.9.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/l/lfbf.md b/docs/version-specific/supported-software/l/lfbf.md index ae070abeac..71f42517d1 100644 --- a/docs/version-specific/supported-software/l/lfbf.md +++ b/docs/version-specific/supported-software/l/lfbf.md @@ -11,6 +11,7 @@ LLVM based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) an version | toolchain --------|---------- ``2025b`` | ``system`` +``2026.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/lfoss.md b/docs/version-specific/supported-software/l/lfoss.md index 8d440d993a..8bbe8e379d 100644 --- a/docs/version-specific/supported-software/l/lfoss.md +++ b/docs/version-specific/supported-software/l/lfoss.md @@ -4,13 +4,14 @@ search: --- # lfoss -GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. +LLVM-based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. -*homepage*: +*homepage*: <(none)> version | toolchain --------|---------- ``2025b`` | ``system`` +``2026.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/lftp.md b/docs/version-specific/supported-software/l/lftp.md index 00936df9d6..de9931c98c 100644 --- a/docs/version-specific/supported-software/l/lftp.md +++ b/docs/version-specific/supported-software/l/lftp.md @@ -10,7 +10,6 @@ LFTP is a sophisticated ftp/http client, and a file transfer program supporting version | toolchain --------|---------- -``4.9.2`` | ``GCCcore/11.2.0`` ``4.9.3`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/l/libBigWig.md b/docs/version-specific/supported-software/l/libBigWig.md index 1376025166..cd1d5777e6 100644 --- a/docs/version-specific/supported-software/l/libBigWig.md +++ b/docs/version-specific/supported-software/l/libBigWig.md @@ -10,7 +10,6 @@ A C library for handling bigWig files version | toolchain --------|---------- -``0.4.6`` | ``GCCcore/11.2.0`` ``0.4.8`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/l/libGLU.md b/docs/version-specific/supported-software/l/libGLU.md index a11aeb0196..41dcbed3b4 100644 --- a/docs/version-specific/supported-software/l/libGLU.md +++ b/docs/version-specific/supported-software/l/libGLU.md @@ -10,7 +10,6 @@ The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. version | toolchain --------|---------- -``9.0.2`` | ``GCCcore/11.2.0`` ``9.0.2`` | ``GCCcore/11.3.0`` ``9.0.2`` | ``GCCcore/12.2.0`` ``9.0.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libGridXC.md b/docs/version-specific/supported-software/l/libGridXC.md index cf4823325a..219785bf52 100644 --- a/docs/version-specific/supported-software/l/libGridXC.md +++ b/docs/version-specific/supported-software/l/libGridXC.md @@ -10,8 +10,6 @@ A library to compute the exchange and correlation energy and potential in spher version | toolchain --------|---------- -``0.9.6`` | ``gompi/2021b`` -``0.9.6`` | ``iimpi/2021b`` ``1.1.0`` | ``gompi/2022a`` ``2.0.2`` | ``gompi/2023a`` ``2.0.2`` | ``gompi/2024a`` diff --git a/docs/version-specific/supported-software/l/libMemcached.md b/docs/version-specific/supported-software/l/libMemcached.md index 283330c7bf..c7adc73c2c 100644 --- a/docs/version-specific/supported-software/l/libMemcached.md +++ b/docs/version-specific/supported-software/l/libMemcached.md @@ -11,6 +11,7 @@ libMemcached is an open source C/C++ client library and tools for the memcached version | toolchain --------|---------- ``1.0.18`` | ``GCCcore/13.2.0`` +``1.0.18`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libPSML.md b/docs/version-specific/supported-software/l/libPSML.md index 781534a7fb..00cb2d8357 100644 --- a/docs/version-specific/supported-software/l/libPSML.md +++ b/docs/version-specific/supported-software/l/libPSML.md @@ -4,14 +4,12 @@ search: --- # libPSML -LibPSML provides a Fortran API to parse files in the PSeudopotential Markup Language (PSML) format. +A library to handle pseudopotentials in PSML format -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.1.10`` | ``GCC/11.2.0`` -``1.1.10`` | ``intel-compilers/2021.4.0`` ``1.1.12`` | ``GCC/11.3.0`` ``2.1.0`` | ``GCC/12.3.0`` ``2.1.0`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/l/libRmath.md b/docs/version-specific/supported-software/l/libRmath.md index 1859846ba8..be8ff8535a 100644 --- a/docs/version-specific/supported-software/l/libRmath.md +++ b/docs/version-specific/supported-software/l/libRmath.md @@ -10,7 +10,6 @@ The routines supporting the distribution and special functions in R and a few ot version | toolchain --------|---------- -``4.1.2`` | ``GCCcore/11.2.0`` ``4.2.1`` | ``GCCcore/11.3.0`` ``4.5.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libWallModelledLES.md b/docs/version-specific/supported-software/l/libWallModelledLES.md deleted file mode 100644 index 0a5d7c8946..0000000000 --- a/docs/version-specific/supported-software/l/libWallModelledLES.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libWallModelledLES - -libWallModelledLES is a library based on OpenFOAM® technology, extending the capabilities of OpenFOAM in the area of wall-modelled LES (WMLES). This is a turbulence modelling methodology, which allows to make LES cheaper by not resolving the inner region of turbulent boundary layers. - -*homepage*: - -version | toolchain ---------|---------- -``0.6.1`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libaec.md b/docs/version-specific/supported-software/l/libaec.md index 71a6b39303..2df8c3823f 100644 --- a/docs/version-specific/supported-software/l/libaec.md +++ b/docs/version-specific/supported-software/l/libaec.md @@ -10,7 +10,6 @@ Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsig version | toolchain --------|---------- -``1.0.6`` | ``GCCcore/11.2.0`` ``1.0.6`` | ``GCCcore/11.3.0`` ``1.0.6`` | ``GCCcore/12.2.0`` ``1.0.6`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libaio.md b/docs/version-specific/supported-software/l/libaio.md index c87d6ed469..ca4ee39f06 100644 --- a/docs/version-specific/supported-software/l/libaio.md +++ b/docs/version-specific/supported-software/l/libaio.md @@ -10,7 +10,6 @@ Asynchronous input/output library that uses the kernels native interface. version | toolchain --------|---------- -``0.3.112`` | ``GCCcore/11.2.0`` ``0.3.112`` | ``GCCcore/11.3.0`` ``0.3.113`` | ``GCCcore/12.2.0`` ``0.3.113`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libarchive.md b/docs/version-specific/supported-software/l/libarchive.md index 6ee1f45eb6..d13e6999b8 100644 --- a/docs/version-specific/supported-software/l/libarchive.md +++ b/docs/version-specific/supported-software/l/libarchive.md @@ -10,7 +10,6 @@ Multi-format archive and compression library version | toolchain --------|---------- -``3.5.1`` | ``GCCcore/11.2.0`` ``3.6.1`` | ``GCCcore/11.3.0`` ``3.6.1`` | ``GCCcore/12.2.0`` ``3.6.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libavif.md b/docs/version-specific/supported-software/l/libavif.md index 5ba272402a..f9228317a3 100644 --- a/docs/version-specific/supported-software/l/libavif.md +++ b/docs/version-specific/supported-software/l/libavif.md @@ -15,6 +15,7 @@ version | toolchain ``1.1.1`` | ``GCCcore/13.2.0`` ``1.2.0`` | ``GCCcore/13.3.0`` ``1.3.0`` | ``GCCcore/14.2.0`` +``1.3.0`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libcerf.md b/docs/version-specific/supported-software/l/libcerf.md index 519f7a7899..7347d8f1ed 100644 --- a/docs/version-specific/supported-software/l/libcerf.md +++ b/docs/version-specific/supported-software/l/libcerf.md @@ -10,7 +10,6 @@ libcerf is a self-contained numeric library that provides an efficient and accu version | toolchain --------|---------- -``1.17`` | ``GCCcore/11.2.0`` ``2.1`` | ``GCCcore/11.3.0`` ``2.3`` | ``GCCcore/12.2.0`` ``2.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libconfig.md b/docs/version-specific/supported-software/l/libconfig.md index f8729a7f5e..0e52b50b53 100644 --- a/docs/version-specific/supported-software/l/libconfig.md +++ b/docs/version-specific/supported-software/l/libconfig.md @@ -10,7 +10,6 @@ Libconfig is a simple library for processing structured configuration files version | toolchain --------|---------- -``1.7.3`` | ``GCCcore/11.2.0`` ``1.8.1`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/l/libdap.md b/docs/version-specific/supported-software/l/libdap.md index 6e84978529..4c769cf6eb 100644 --- a/docs/version-specific/supported-software/l/libdap.md +++ b/docs/version-specific/supported-software/l/libdap.md @@ -12,9 +12,9 @@ version | toolchain --------|---------- ``3.20.11`` | ``GCCcore/11.3.0`` ``3.20.11`` | ``GCCcore/12.3.0`` -``3.20.8`` | ``GCCcore/11.2.0`` ``3.21.0-131`` | ``GCCcore/13.3.0`` ``3.21.0-27`` | ``GCCcore/13.3.0`` +``3.21.1`` | ``GCCcore/14.2.0`` ``3.21.1`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/l/libdbusmenu.md b/docs/version-specific/supported-software/l/libdbusmenu.md new file mode 100644 index 0000000000..8ff2dcbb04 --- /dev/null +++ b/docs/version-specific/supported-software/l/libdbusmenu.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# libdbusmenu + +Library for passing menus over DBus + +*homepage*: + +version | toolchain +--------|---------- +``18.10.20180917_bzr492+repack1-4`` | ``GCCcore/14.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/libde265.md b/docs/version-specific/supported-software/l/libde265.md index 58cb6d1c0e..9059f21ed9 100644 --- a/docs/version-specific/supported-software/l/libde265.md +++ b/docs/version-specific/supported-software/l/libde265.md @@ -16,7 +16,6 @@ version | toolchain ``1.0.15`` | ``GCCcore/13.3.0`` ``1.0.16`` | ``GCCcore/14.2.0`` ``1.0.16`` | ``GCCcore/14.3.0`` -``1.0.8`` | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libdeflate.md b/docs/version-specific/supported-software/l/libdeflate.md index 67f6a5e1f5..d6f7f22c79 100644 --- a/docs/version-specific/supported-software/l/libdeflate.md +++ b/docs/version-specific/supported-software/l/libdeflate.md @@ -17,7 +17,6 @@ version | toolchain ``1.20`` | ``GCCcore/13.3.0`` ``1.24`` | ``GCCcore/14.2.0`` ``1.24`` | ``GCCcore/14.3.0`` -``1.8`` | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libdisplay-info.md b/docs/version-specific/supported-software/l/libdisplay-info.md new file mode 100644 index 0000000000..02b531793e --- /dev/null +++ b/docs/version-specific/supported-software/l/libdisplay-info.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# libdisplay-info + +EDID and DisplayID library + +*homepage*: + +version | toolchain +--------|---------- +``0.3.0`` | ``GCCcore/14.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/libdrm.md b/docs/version-specific/supported-software/l/libdrm.md index 4cc3a3e48c..d3faef5635 100644 --- a/docs/version-specific/supported-software/l/libdrm.md +++ b/docs/version-specific/supported-software/l/libdrm.md @@ -10,7 +10,6 @@ Direct Rendering Manager runtime library. version | toolchain --------|---------- -``2.4.107`` | ``GCCcore/11.2.0`` ``2.4.110`` | ``GCCcore/11.3.0`` ``2.4.114`` | ``GCCcore/12.2.0`` ``2.4.115`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libdwarf.md b/docs/version-specific/supported-software/l/libdwarf.md index e66fb117e2..86a2134d5d 100644 --- a/docs/version-specific/supported-software/l/libdwarf.md +++ b/docs/version-specific/supported-software/l/libdwarf.md @@ -16,7 +16,6 @@ version | toolchain ``0.9.2`` | ``GCCcore/13.2.0`` ``2.1.0`` | ``GCCcore/14.2.0`` ``2.1.0`` | ``GCCcore/14.3.0`` -``20210528`` | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libedit.md b/docs/version-specific/supported-software/l/libedit.md index 87b21234e1..0bd4d717b4 100644 --- a/docs/version-specific/supported-software/l/libedit.md +++ b/docs/version-specific/supported-software/l/libedit.md @@ -11,7 +11,6 @@ This BSD-style licensed command line editor library provides generic line editin version | toolchain --------|---------- ``20191231`` | ``GCCcore/12.3.0`` -``20210910`` | ``GCCcore/11.2.0`` ``20240517`` | ``GCCcore/13.2.0`` ``20240808`` | ``GCCcore/13.3.0`` ``20250104`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/l/libelf.md b/docs/version-specific/supported-software/l/libelf.md index 0051efa650..686a0747f0 100644 --- a/docs/version-specific/supported-software/l/libelf.md +++ b/docs/version-specific/supported-software/l/libelf.md @@ -10,7 +10,6 @@ libelf is a free ELF object file access library version | toolchain --------|---------- -``0.8.13`` | ``GCCcore/11.2.0`` ``0.8.13`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/l/libepoxy.md b/docs/version-specific/supported-software/l/libepoxy.md index 527fce0d0c..ea201629ed 100644 --- a/docs/version-specific/supported-software/l/libepoxy.md +++ b/docs/version-specific/supported-software/l/libepoxy.md @@ -17,7 +17,6 @@ version | toolchain ``1.5.10`` | ``GCCcore/13.3.0`` ``1.5.10`` | ``GCCcore/14.2.0`` ``1.5.10`` | ``GCCcore/14.3.0`` -``1.5.8`` | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libev.md b/docs/version-specific/supported-software/l/libev.md index 356b7684e7..35ee1b2bda 100644 --- a/docs/version-specific/supported-software/l/libev.md +++ b/docs/version-specific/supported-software/l/libev.md @@ -10,7 +10,6 @@ A full-featured and high-performance (see benchmark) event loop that is loosely version | toolchain --------|---------- -``4.33`` | ``GCC/11.2.0`` ``4.33`` | ``GCC/11.3.0`` ``4.33`` | ``GCC/12.3.0`` ``4.33`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/a/avro-cpp.md b/docs/version-specific/supported-software/l/libevdev.md similarity index 82% rename from docs/version-specific/supported-software/a/avro-cpp.md rename to docs/version-specific/supported-software/l/libevdev.md index e430c9cb71..1f939ed7de 100644 --- a/docs/version-specific/supported-software/a/avro-cpp.md +++ b/docs/version-specific/supported-software/l/libevdev.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# avro-cpp +# libevdev -C++ implementation of Avro data serialization system. +Wrapper library for evdev devices -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.11.1`` | ``GCC/11.2.0`` +``1.13.6`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libevent.md b/docs/version-specific/supported-software/l/libevent.md index e9669fcf6e..af50361256 100644 --- a/docs/version-specific/supported-software/l/libevent.md +++ b/docs/version-specific/supported-software/l/libevent.md @@ -10,7 +10,6 @@ The libevent API provides a mechanism to execute a callback function when a spe version | toolchain --------|---------- -``2.1.12`` | ``GCCcore/11.2.0`` ``2.1.12`` | ``GCCcore/11.3.0`` ``2.1.12`` | ``GCCcore/12.2.0`` ``2.1.12`` | ``GCCcore/12.3.0`` @@ -18,6 +17,7 @@ version | toolchain ``2.1.12`` | ``GCCcore/13.3.0`` ``2.1.12`` | ``GCCcore/14.2.0`` ``2.1.12`` | ``GCCcore/14.3.0`` +``2.1.12`` | ``GCCcore/15.2.0`` ``2.1.12`` | ``system`` diff --git a/docs/version-specific/supported-software/l/libexif.md b/docs/version-specific/supported-software/l/libexif.md index cc4bafc069..017fbc5dae 100644 --- a/docs/version-specific/supported-software/l/libexif.md +++ b/docs/version-specific/supported-software/l/libexif.md @@ -10,7 +10,6 @@ A library for parsing, editing, and saving EXIF data. version | toolchain --------|---------- -``0.6.24`` | ``GCCcore/11.2.0`` ``0.6.25`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/l/libfabric.md b/docs/version-specific/supported-software/l/libfabric.md index fe8af3a33b..8aeaf64d25 100644 --- a/docs/version-specific/supported-software/l/libfabric.md +++ b/docs/version-specific/supported-software/l/libfabric.md @@ -10,9 +10,6 @@ Libfabric is a core component of OFI. It is the library that defines and exports version | toolchain --------|---------- -``1.13.0`` | ``GCCcore/11.2.0`` -``1.13.1`` | ``GCCcore/11.2.0`` -``1.13.2`` | ``GCCcore/11.2.0`` ``1.15.1`` | ``GCCcore/11.3.0`` ``1.16.1`` | ``GCCcore/12.2.0`` ``1.18.0`` | ``GCCcore/12.3.0`` @@ -20,6 +17,7 @@ version | toolchain ``1.21.0`` | ``GCCcore/13.3.0`` ``2.0.0`` | ``GCCcore/14.2.0`` ``2.1.0`` | ``GCCcore/14.3.0`` +``2.5.0`` | ``GCCcore/15.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libfdf.md b/docs/version-specific/supported-software/l/libfdf.md index 1ddc5387a5..1049751a82 100644 --- a/docs/version-specific/supported-software/l/libfdf.md +++ b/docs/version-specific/supported-software/l/libfdf.md @@ -4,17 +4,15 @@ search: --- # libfdf -LibFDF provides a Fortran API to parse files in the Flexible Data Format (FDF). +LibFDF is the official implementation of the FDF specifications for use in client codes. -*homepage*: +*homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.2.2`` | ``-serial`` | ``GCC/11.2.0`` -``0.2.2`` | ``-serial`` | ``intel-compilers/2021.4.0`` -``0.5.0`` | | ``GCC/11.3.0`` -``0.5.1`` | | ``GCC/12.3.0`` -``0.5.1`` | | ``GCC/13.3.0`` +version | toolchain +--------|---------- +``0.5.0`` | ``GCC/11.3.0`` +``0.5.1`` | ``GCC/12.3.0`` +``0.5.1`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libffi.md b/docs/version-specific/supported-software/l/libffi.md index d7a9dd59c5..55207bf9a7 100644 --- a/docs/version-specific/supported-software/l/libffi.md +++ b/docs/version-specific/supported-software/l/libffi.md @@ -10,7 +10,6 @@ The libffi library provides a portable, high level programming interface to var version | toolchain --------|---------- -``3.4.2`` | ``GCCcore/11.2.0`` ``3.4.2`` | ``GCCcore/11.3.0`` ``3.4.4`` | ``GCCcore/12.2.0`` ``3.4.4`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libgcrypt.md b/docs/version-specific/supported-software/l/libgcrypt.md index 726e708a08..9453c79405 100644 --- a/docs/version-specific/supported-software/l/libgcrypt.md +++ b/docs/version-specific/supported-software/l/libgcrypt.md @@ -14,7 +14,7 @@ version | toolchain ``1.10.3`` | ``GCCcore/12.3.0`` ``1.10.3`` | ``GCCcore/13.2.0`` ``1.11.2`` | ``GCCcore/14.2.0`` -``1.9.3`` | ``GCCcore/11.2.0`` +``1.11.2`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libgd.md b/docs/version-specific/supported-software/l/libgd.md index 87c9a77a4b..951287c120 100644 --- a/docs/version-specific/supported-software/l/libgd.md +++ b/docs/version-specific/supported-software/l/libgd.md @@ -10,7 +10,6 @@ GD is an open source code library for the dynamic creation of images by programm version | toolchain --------|---------- -``2.3.3`` | ``GCCcore/11.2.0`` ``2.3.3`` | ``GCCcore/11.3.0`` ``2.3.3`` | ``GCCcore/12.2.0`` ``2.3.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libgdiplus.md b/docs/version-specific/supported-software/l/libgdiplus.md deleted file mode 100644 index 8d1c65276a..0000000000 --- a/docs/version-specific/supported-software/l/libgdiplus.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libgdiplus - -Libgdiplus is the Mono library that provides a GDI+-compatible API on non-Windows operating systems. - -*homepage*: - -version | toolchain ---------|---------- -``6.1`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libgeotiff.md b/docs/version-specific/supported-software/l/libgeotiff.md index a9038721db..7bcd3476c4 100644 --- a/docs/version-specific/supported-software/l/libgeotiff.md +++ b/docs/version-specific/supported-software/l/libgeotiff.md @@ -10,7 +10,6 @@ Library for reading and writing coordinate system information from/to GeoTIFF fi version | toolchain --------|---------- -``1.7.0`` | ``GCCcore/11.2.0`` ``1.7.1`` | ``GCCcore/11.3.0`` ``1.7.1`` | ``GCCcore/12.2.0`` ``1.7.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libgit2.md b/docs/version-specific/supported-software/l/libgit2.md index 5702267640..de6eeb75a2 100644 --- a/docs/version-specific/supported-software/l/libgit2.md +++ b/docs/version-specific/supported-software/l/libgit2.md @@ -10,7 +10,6 @@ libgit2 is a portable, pure C implementation of the Git core methods provided as version | toolchain --------|---------- -``1.1.1`` | ``GCCcore/11.2.0`` ``1.4.3`` | ``GCCcore/11.3.0`` ``1.5.0`` | ``GCCcore/12.2.0`` ``1.7.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libglvnd.md b/docs/version-specific/supported-software/l/libglvnd.md index 8ef3d7cd27..6cc35f2343 100644 --- a/docs/version-specific/supported-software/l/libglvnd.md +++ b/docs/version-specific/supported-software/l/libglvnd.md @@ -10,7 +10,6 @@ libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls bet version | toolchain --------|---------- -``1.3.3`` | ``GCCcore/11.2.0`` ``1.4.0`` | ``GCCcore/11.3.0`` ``1.6.0`` | ``GCCcore/12.2.0`` ``1.6.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libgpg-error.md b/docs/version-specific/supported-software/l/libgpg-error.md index cc355e0411..4c9f6e1429 100644 --- a/docs/version-specific/supported-software/l/libgpg-error.md +++ b/docs/version-specific/supported-software/l/libgpg-error.md @@ -10,11 +10,11 @@ Libgpg-error is a small library that defines common error values for all GnuPG c version | toolchain --------|---------- -``1.42`` | ``GCCcore/11.2.0`` ``1.46`` | ``GCCcore/11.3.0`` ``1.48`` | ``GCCcore/12.3.0`` ``1.48`` | ``GCCcore/13.2.0`` ``1.56`` | ``GCCcore/14.2.0`` +``1.59`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libharu.md b/docs/version-specific/supported-software/l/libharu.md index ed6b2d239a..2cbbafb340 100644 --- a/docs/version-specific/supported-software/l/libharu.md +++ b/docs/version-specific/supported-software/l/libharu.md @@ -10,12 +10,11 @@ libHaru is a free, cross platform, open source library for generating PDF files. version | toolchain --------|---------- -``2.3.0`` | ``GCCcore/11.2.0`` ``2.3.0`` | ``GCCcore/11.3.0`` ``2.3.0`` | ``GCCcore/12.3.0`` -``2.3.0`` | ``foss/2021b`` ``2.4.5`` | ``GCCcore/13.3.0`` ``2.4.5`` | ``GCCcore/14.2.0`` +``2.4.5`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libheif.md b/docs/version-specific/supported-software/l/libheif.md index 8f82822864..87972a7e9a 100644 --- a/docs/version-specific/supported-software/l/libheif.md +++ b/docs/version-specific/supported-software/l/libheif.md @@ -10,7 +10,6 @@ libheif is an HEIF and AVIF file format decoder and encoder version | toolchain --------|---------- -``1.12.0`` | ``GCCcore/11.2.0`` ``1.16.2`` | ``GCCcore/11.3.0`` ``1.17.6`` | ``GCCcore/12.3.0`` ``1.19.5`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/l/libiconv.md b/docs/version-specific/supported-software/l/libiconv.md index e0ea7c4dde..dc430787ae 100644 --- a/docs/version-specific/supported-software/l/libiconv.md +++ b/docs/version-specific/supported-software/l/libiconv.md @@ -10,7 +10,6 @@ Libiconv converts from one character encoding to another through Unicode convers version | toolchain --------|---------- -``1.16`` | ``GCCcore/11.2.0`` ``1.17`` | ``GCCcore/11.3.0`` ``1.17`` | ``GCCcore/12.2.0`` ``1.17`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libidn.md b/docs/version-specific/supported-software/l/libidn.md index 10e9335e81..69bebf6552 100644 --- a/docs/version-specific/supported-software/l/libidn.md +++ b/docs/version-specific/supported-software/l/libidn.md @@ -10,7 +10,6 @@ GNU Libidn is a fully documented implementation of the Stringprep, Punycode and version | toolchain --------|---------- -``1.38`` | ``GCCcore/11.2.0`` ``1.41`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/l/libidn2.md b/docs/version-specific/supported-software/l/libidn2.md index 08d63ae05d..560bf507c0 100644 --- a/docs/version-specific/supported-software/l/libidn2.md +++ b/docs/version-specific/supported-software/l/libidn2.md @@ -10,7 +10,6 @@ Libidn2 implements the revised algorithm for internationalized domain names call version | toolchain --------|---------- -``2.3.2`` | ``GCCcore/11.2.0`` ``2.3.2`` | ``GCCcore/11.3.0`` ``2.3.2`` | ``GCCcore/13.2.0`` ``2.3.4`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/l/libinput.md b/docs/version-specific/supported-software/l/libinput.md new file mode 100644 index 0000000000..2fa7c0cb08 --- /dev/null +++ b/docs/version-specific/supported-software/l/libinput.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# libinput + +Input device management and event handling library + +*homepage*: + +version | toolchain +--------|---------- +``1.30.1`` | ``GCCcore/14.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/libjpeg-turbo.md b/docs/version-specific/supported-software/l/libjpeg-turbo.md index fc457541a0..2f243ef62f 100644 --- a/docs/version-specific/supported-software/l/libjpeg-turbo.md +++ b/docs/version-specific/supported-software/l/libjpeg-turbo.md @@ -10,7 +10,6 @@ libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelera version | toolchain --------|---------- -``2.0.6`` | ``GCCcore/11.2.0`` ``2.1.3`` | ``GCCcore/11.3.0`` ``2.1.4`` | ``GCCcore/12.2.0`` ``2.1.5.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libleidenalg.md b/docs/version-specific/supported-software/l/libleidenalg.md index 2a852c8c70..0bc15a8e53 100644 --- a/docs/version-specific/supported-software/l/libleidenalg.md +++ b/docs/version-specific/supported-software/l/libleidenalg.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.11.1`` | ``foss/2022b`` ``0.11.1`` | ``foss/2023a`` +``0.11.1`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/c/CloudCompare.md b/docs/version-specific/supported-software/l/libliftoff.md similarity index 82% rename from docs/version-specific/supported-software/c/CloudCompare.md rename to docs/version-specific/supported-software/l/libliftoff.md index 880392ca70..44605cf8f1 100644 --- a/docs/version-specific/supported-software/c/CloudCompare.md +++ b/docs/version-specific/supported-software/l/libliftoff.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# CloudCompare +# libliftoff -3D point cloud and mesh processing software +Lightweight KMS plane library. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.12.4`` | ``foss/2021b`` +``0.5.0`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libobjcryst.md b/docs/version-specific/supported-software/l/libobjcryst.md deleted file mode 100644 index 005d567cf1..0000000000 --- a/docs/version-specific/supported-software/l/libobjcryst.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# libobjcryst - -ObjCryst++ is Object-Oriented Crystallographic Library for C++ - -*homepage*: - -version | toolchain ---------|---------- -``2021.1.2`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/l/libogg.md b/docs/version-specific/supported-software/l/libogg.md index b88458de94..c7f9c9e4a6 100644 --- a/docs/version-specific/supported-software/l/libogg.md +++ b/docs/version-specific/supported-software/l/libogg.md @@ -10,7 +10,6 @@ Ogg is a multimedia container format, and the native file and stream format for version | toolchain --------|---------- -``1.3.5`` | ``GCCcore/11.2.0`` ``1.3.5`` | ``GCCcore/11.3.0`` ``1.3.5`` | ``GCCcore/12.2.0`` ``1.3.5`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libpci.md b/docs/version-specific/supported-software/l/libpci.md index eb7715193d..9d1c863b2c 100644 --- a/docs/version-specific/supported-software/l/libpci.md +++ b/docs/version-specific/supported-software/l/libpci.md @@ -11,7 +11,6 @@ Library for portable access to PCI bus configuration registers from PCI Utils. version | toolchain --------|---------- ``3.14.0`` | ``GCCcore/14.2.0`` -``3.7.0`` | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libpciaccess.md b/docs/version-specific/supported-software/l/libpciaccess.md index 0a8fc98017..dd4875a5e7 100644 --- a/docs/version-specific/supported-software/l/libpciaccess.md +++ b/docs/version-specific/supported-software/l/libpciaccess.md @@ -10,7 +10,6 @@ Generic PCI access library. version | toolchain --------|---------- -``0.16`` | ``GCCcore/11.2.0`` ``0.16`` | ``GCCcore/11.3.0`` ``0.17`` | ``GCCcore/12.2.0`` ``0.17`` | ``GCCcore/12.3.0`` @@ -18,6 +17,7 @@ version | toolchain ``0.18.1`` | ``GCCcore/13.3.0`` ``0.18.1`` | ``GCCcore/14.2.0`` ``0.18.1`` | ``GCCcore/14.3.0`` +``0.19`` | ``GCCcore/15.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libpng.md b/docs/version-specific/supported-software/l/libpng.md index d722f1188d..a075734954 100644 --- a/docs/version-specific/supported-software/l/libpng.md +++ b/docs/version-specific/supported-software/l/libpng.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``1.5.30`` | ``system`` ``1.6.34`` | ``system`` -``1.6.37`` | ``GCCcore/11.2.0`` ``1.6.37`` | ``GCCcore/11.3.0`` ``1.6.38`` | ``GCCcore/12.2.0`` ``1.6.39`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libpsl.md b/docs/version-specific/supported-software/l/libpsl.md index 19b1710c24..63faf3b2e9 100644 --- a/docs/version-specific/supported-software/l/libpsl.md +++ b/docs/version-specific/supported-software/l/libpsl.md @@ -10,7 +10,6 @@ C library for the Public Suffix List version | toolchain --------|---------- -``0.21.1`` | ``GCCcore/11.2.0`` ``0.21.1`` | ``GCCcore/11.3.0`` ``0.21.5`` | ``GCCcore/12.3.0`` ``0.21.5`` | ``GCCcore/14.2.0`` diff --git a/docs/version-specific/supported-software/l/libpspio.md b/docs/version-specific/supported-software/l/libpspio.md index c993eabd6d..48bb0b780a 100644 --- a/docs/version-specific/supported-software/l/libpspio.md +++ b/docs/version-specific/supported-software/l/libpspio.md @@ -10,9 +10,7 @@ libpspio is a library to read and write pseudopotentials in multiple formats. version | toolchain --------|---------- -``0.2.4`` | ``GCC/11.2.0`` ``0.2.4`` | ``GCC/12.3.0`` -``0.2.4`` | ``intel-compilers/2021.4.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libreadline.md b/docs/version-specific/supported-software/l/libreadline.md index a569890214..65eaf2e9db 100644 --- a/docs/version-specific/supported-software/l/libreadline.md +++ b/docs/version-specific/supported-software/l/libreadline.md @@ -10,7 +10,6 @@ The GNU Readline library provides a set of functions for use by applications th version | toolchain --------|---------- -``8.1`` | ``GCCcore/11.2.0`` ``8.1`` | ``GCCcore/11.3.0`` ``8.1.2`` | ``GCCcore/11.3.0`` ``8.1.2`` | ``GCCcore/12.1.0`` diff --git a/docs/version-specific/supported-software/l/librsvg.md b/docs/version-specific/supported-software/l/librsvg.md index d813426bc4..e0901c04af 100644 --- a/docs/version-specific/supported-software/l/librsvg.md +++ b/docs/version-specific/supported-software/l/librsvg.md @@ -10,7 +10,6 @@ Librsvg is a library to render SVG files using cairo. version | toolchain --------|---------- -``2.52.8`` | ``GCCcore/11.2.0`` ``2.55.1`` | ``GCCcore/11.3.0`` ``2.58.0`` | ``GCCcore/12.3.0`` ``2.58.0`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/l/librttopo.md b/docs/version-specific/supported-software/l/librttopo.md index 181025031a..93fdc4ac06 100644 --- a/docs/version-specific/supported-software/l/librttopo.md +++ b/docs/version-specific/supported-software/l/librttopo.md @@ -10,8 +10,10 @@ The RT Topology Library exposes an API to create and manage standard (ISO 13249 version | toolchain --------|---------- -``1.1.0`` | ``GCC/11.2.0`` ``1.1.0`` | ``GCC/12.3.0`` +``1.1.0`` | ``GCC/13.3.0`` +``1.1.0`` | ``GCC/14.2.0`` +``1.1.0`` | ``GCC/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libsfdo.md b/docs/version-specific/supported-software/l/libsfdo.md new file mode 100644 index 0000000000..bb76e4b0ca --- /dev/null +++ b/docs/version-specific/supported-software/l/libsfdo.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# libsfdo + +A collection of libraries which implement some of the freedesktop.org specifications. + +*homepage*: + +version | toolchain +--------|---------- +``0.1.4`` | ``GCCcore/14.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/l/libsndfile.md b/docs/version-specific/supported-software/l/libsndfile.md index b24293ba74..dc2d7eee71 100644 --- a/docs/version-specific/supported-software/l/libsndfile.md +++ b/docs/version-specific/supported-software/l/libsndfile.md @@ -10,7 +10,6 @@ Libsndfile is a C library for reading and writing files containing sampled sound version | toolchain --------|---------- -``1.0.31`` | ``GCCcore/11.2.0`` ``1.1.0`` | ``GCCcore/11.3.0`` ``1.2.0`` | ``GCCcore/12.2.0`` ``1.2.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libsodium.md b/docs/version-specific/supported-software/l/libsodium.md index fbe63464a1..b1ec051451 100644 --- a/docs/version-specific/supported-software/l/libsodium.md +++ b/docs/version-specific/supported-software/l/libsodium.md @@ -10,7 +10,6 @@ Sodium is a modern, easy-to-use software library for encryption, decryption, si version | toolchain --------|---------- -``1.0.18`` | ``GCCcore/11.2.0`` ``1.0.18`` | ``GCCcore/11.3.0`` ``1.0.18`` | ``GCCcore/12.2.0`` ``1.0.18`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libspatialindex.md b/docs/version-specific/supported-software/l/libspatialindex.md index c6b8162471..488d938a22 100644 --- a/docs/version-specific/supported-software/l/libspatialindex.md +++ b/docs/version-specific/supported-software/l/libspatialindex.md @@ -10,7 +10,6 @@ C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API version | toolchain --------|---------- -``1.9.3`` | ``GCCcore/11.2.0`` ``1.9.3`` | ``GCCcore/11.3.0`` ``1.9.3`` | ``GCCcore/12.2.0`` ``1.9.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libspatialite.md b/docs/version-specific/supported-software/l/libspatialite.md index f88406efae..4be9e5d79f 100644 --- a/docs/version-specific/supported-software/l/libspatialite.md +++ b/docs/version-specific/supported-software/l/libspatialite.md @@ -10,8 +10,10 @@ SpatiaLite is an open source library intended to extend the SQLite core to suppo version | toolchain --------|---------- -``5.0.1`` | ``GCC/11.2.0`` ``5.1.0`` | ``GCC/12.3.0`` +``5.1.0`` | ``GCC/13.3.0`` +``5.1.0`` | ``GCC/14.2.0`` +``5.1.0`` | ``GCC/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libtasn1.md b/docs/version-specific/supported-software/l/libtasn1.md index b2b8c56696..a2aa86204b 100644 --- a/docs/version-specific/supported-software/l/libtasn1.md +++ b/docs/version-specific/supported-software/l/libtasn1.md @@ -10,7 +10,6 @@ Libtasn1 is the ASN.1 library used by GnuTLS, GNU Shishi and some other package version | toolchain --------|---------- -``4.18.0`` | ``GCCcore/11.2.0`` ``4.19.0`` | ``GCCcore/11.3.0`` ``4.19.0`` | ``GCCcore/12.3.0`` ``4.19.0`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/l/libtirpc.md b/docs/version-specific/supported-software/l/libtirpc.md index 8b23e7586b..fd35b4e48c 100644 --- a/docs/version-specific/supported-software/l/libtirpc.md +++ b/docs/version-specific/supported-software/l/libtirpc.md @@ -10,7 +10,6 @@ Libtirpc is a port of Suns Transport-Independent RPC library to Linux. version | toolchain --------|---------- -``1.3.2`` | ``GCCcore/11.2.0`` ``1.3.2`` | ``GCCcore/11.3.0`` ``1.3.3`` | ``GCCcore/12.2.0`` ``1.3.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libtool.md b/docs/version-specific/supported-software/l/libtool.md index 8eb9f01cbf..a59c8ac88a 100644 --- a/docs/version-specific/supported-software/l/libtool.md +++ b/docs/version-specific/supported-software/l/libtool.md @@ -10,7 +10,6 @@ GNU libtool is a generic library support script. Libtool hides the complexity o version | toolchain --------|---------- -``2.4.6`` | ``GCCcore/11.2.0`` ``2.4.7`` | ``GCCcore/11.3.0`` ``2.4.7`` | ``GCCcore/12.2.0`` ``2.4.7`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libunistring.md b/docs/version-specific/supported-software/l/libunistring.md index 556e7ae269..a0385c63c2 100644 --- a/docs/version-specific/supported-software/l/libunistring.md +++ b/docs/version-specific/supported-software/l/libunistring.md @@ -10,7 +10,6 @@ This library provides functions for manipulating Unicode strings and for manipu version | toolchain --------|---------- -``1.0`` | ``GCCcore/11.2.0`` ``1.0`` | ``GCCcore/11.3.0`` ``1.1`` | ``GCCcore/12.3.0`` ``1.2`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/l/libunwind.md b/docs/version-specific/supported-software/l/libunwind.md index d570799976..5d939f891a 100644 --- a/docs/version-specific/supported-software/l/libunwind.md +++ b/docs/version-specific/supported-software/l/libunwind.md @@ -10,7 +10,6 @@ The primary goal of libunwind is to define a portable and efficient C programmin version | toolchain --------|---------- -``1.5.0`` | ``GCCcore/11.2.0`` ``1.6.2`` | ``GCCcore/11.3.0`` ``1.6.2`` | ``GCCcore/12.2.0`` ``1.6.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libvdwxc.md b/docs/version-specific/supported-software/l/libvdwxc.md index 214e594efc..3b501a3967 100644 --- a/docs/version-specific/supported-software/l/libvdwxc.md +++ b/docs/version-specific/supported-software/l/libvdwxc.md @@ -10,11 +10,9 @@ libvdwxc is a general library for evaluating energy and potential for exchange-c version | toolchain --------|---------- -``0.4.0`` | ``foss/2021b`` ``0.4.0`` | ``foss/2022a`` ``0.4.0`` | ``foss/2023a`` ``0.4.0`` | ``foss/2024a`` -``0.4.0`` | ``intel/2021b`` ``0.5.0`` | ``foss/2025a`` ``0.5.0`` | ``foss/2025b`` diff --git a/docs/version-specific/supported-software/l/libvorbis.md b/docs/version-specific/supported-software/l/libvorbis.md index 136832d05d..21866a16a1 100644 --- a/docs/version-specific/supported-software/l/libvorbis.md +++ b/docs/version-specific/supported-software/l/libvorbis.md @@ -10,7 +10,6 @@ Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-pu version | toolchain --------|---------- -``1.3.7`` | ``GCCcore/11.2.0`` ``1.3.7`` | ``GCCcore/11.3.0`` ``1.3.7`` | ``GCCcore/12.2.0`` ``1.3.7`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libwebp.md b/docs/version-specific/supported-software/l/libwebp.md index 71e3350e8b..d598b6d6ee 100644 --- a/docs/version-specific/supported-software/l/libwebp.md +++ b/docs/version-specific/supported-software/l/libwebp.md @@ -10,7 +10,6 @@ WebP is a modern image format that provides superior lossless and lossy compress version | toolchain --------|---------- -``1.2.0`` | ``GCCcore/11.2.0`` ``1.2.4`` | ``GCCcore/11.3.0`` ``1.3.1`` | ``GCCcore/12.2.0`` ``1.3.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libwpe.md b/docs/version-specific/supported-software/l/libwpe.md index 050970c31e..f494668b32 100644 --- a/docs/version-specific/supported-software/l/libwpe.md +++ b/docs/version-specific/supported-software/l/libwpe.md @@ -10,7 +10,6 @@ WPE is the reference WebKit port for embedded and low-consumption computer devic version | toolchain --------|---------- -``1.13.3`` | ``GCCcore/11.2.0`` ``1.14.1`` | ``GCCcore/11.3.0`` ``1.16.0`` | ``GCCcore/12.3.0`` ``1.16.3`` | ``GCCcore/14.2.0`` diff --git a/docs/version-specific/supported-software/l/libxc.md b/docs/version-specific/supported-software/l/libxc.md index 68e3d66a9e..ca9daf3221 100644 --- a/docs/version-specific/supported-software/l/libxc.md +++ b/docs/version-specific/supported-software/l/libxc.md @@ -10,10 +10,6 @@ Libxc is a library of exchange-correlation functionals for density-functional th version | versionsuffix | toolchain --------|---------------|---------- -``4.3.4`` | | ``GCC/11.2.0`` -``4.3.4`` | | ``intel-compilers/2021.4.0`` -``5.1.6`` | | ``GCC/11.2.0`` -``5.1.6`` | | ``intel-compilers/2021.4.0`` ``5.2.3`` | | ``GCC/11.3.0`` ``5.2.3`` | | ``intel-compilers/2022.1.0`` ``6.1.0`` | | ``GCC/12.2.0`` @@ -24,10 +20,13 @@ version | versionsuffix | toolchain ``6.2.2`` | | ``GCC/13.3.0`` ``6.2.2`` | | ``intel-compilers/2023.1.0`` ``6.2.2`` | | ``intel-compilers/2023.2.1`` +``6.2.2`` | | ``intel-compilers/2024.2.0`` ``7.0.0`` | | ``GCC/14.2.0`` +``7.0.0`` | ``-nofhc`` | ``GCC/14.3.0`` ``7.0.0`` | | ``GCC/14.3.0`` ``7.0.0`` | | ``intel-compilers/2025.2.0`` ``7.0.0`` | | ``llvm-compilers/20.1.8`` +``7.0.0`` | | ``nvidia-compilers/25.3-CUDA-12.8.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/libxml2.md b/docs/version-specific/supported-software/l/libxml2.md index 94fb857af4..e818941920 100644 --- a/docs/version-specific/supported-software/l/libxml2.md +++ b/docs/version-specific/supported-software/l/libxml2.md @@ -18,7 +18,6 @@ version | toolchain ``2.13.4`` | ``GCCcore/14.2.0`` ``2.14.3`` | ``GCCcore/14.3.0`` ``2.15.1`` | ``GCCcore/15.2.0`` -``2.9.10`` | ``GCCcore/11.2.0`` ``2.9.13`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/l/libxslt.md b/docs/version-specific/supported-software/l/libxslt.md index 776ddc9726..c60e95d654 100644 --- a/docs/version-specific/supported-software/l/libxslt.md +++ b/docs/version-specific/supported-software/l/libxslt.md @@ -10,7 +10,6 @@ Libxslt is the XSLT C library developed for the GNOME project (but usable outsi version | toolchain --------|---------- -``1.1.34`` | ``GCCcore/11.2.0`` ``1.1.34`` | ``GCCcore/11.3.0`` ``1.1.37`` | ``GCCcore/12.2.0`` ``1.1.38`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libxsmm.md b/docs/version-specific/supported-software/l/libxsmm.md index 53fab8d59f..bc33f13394 100644 --- a/docs/version-specific/supported-software/l/libxsmm.md +++ b/docs/version-specific/supported-software/l/libxsmm.md @@ -10,7 +10,6 @@ LIBXSMM is a library for small dense and small sparse matrix-matrix multiplicati version | toolchain --------|---------- -``1.17`` | ``GCC/11.2.0`` ``1.17`` | ``GCC/11.3.0`` ``1.17`` | ``GCC/12.2.0`` ``1.17`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libyaml.md b/docs/version-specific/supported-software/l/libyaml.md index c0425044ca..52fb9d0706 100644 --- a/docs/version-specific/supported-software/l/libyaml.md +++ b/docs/version-specific/supported-software/l/libyaml.md @@ -10,7 +10,6 @@ LibYAML is a YAML parser and emitter written in C. version | toolchain --------|---------- -``0.2.5`` | ``GCCcore/11.2.0`` ``0.2.5`` | ``GCCcore/11.3.0`` ``0.2.5`` | ``GCCcore/12.2.0`` ``0.2.5`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/libzip.md b/docs/version-specific/supported-software/l/libzip.md index 7938461779..71741ff711 100644 --- a/docs/version-specific/supported-software/l/libzip.md +++ b/docs/version-specific/supported-software/l/libzip.md @@ -12,7 +12,9 @@ version | toolchain --------|---------- ``1.10.1`` | ``GCCcore/12.3.0`` ``1.10.1`` | ``GCCcore/13.2.0`` -``1.7.3`` | ``GCCcore/11.2.0`` +``1.11.4`` | ``GCCcore/13.3.0`` +``1.11.4`` | ``GCCcore/14.2.0`` +``1.11.4`` | ``GCCcore/14.3.0`` ``1.9.2`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/l/likwid.md b/docs/version-specific/supported-software/l/likwid.md index 8fb55bb09e..098467b3d0 100644 --- a/docs/version-specific/supported-software/l/likwid.md +++ b/docs/version-specific/supported-software/l/likwid.md @@ -10,8 +10,6 @@ Likwid stands for Like I knew what I am doing. This project contributes easy to version | toolchain --------|---------- -``5.2.0`` | ``GCC/11.2.0`` -``5.2.1`` | ``GCC/11.2.0`` ``5.2.2`` | ``GCC/11.3.0`` ``5.2.2`` | ``GCC/12.3.0`` ``5.3.0`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/l/line_profiler.md b/docs/version-specific/supported-software/l/line_profiler.md index 0c70d68171..39a50e3c85 100644 --- a/docs/version-specific/supported-software/l/line_profiler.md +++ b/docs/version-specific/supported-software/l/line_profiler.md @@ -10,7 +10,6 @@ line_profiler is a module for doing line-by-line profiling of functions. kernpro version | toolchain --------|---------- -``3.5.1`` | ``foss/2021b`` ``4.0.0`` | ``foss/2022a`` ``4.1.1`` | ``GCCcore/12.2.0`` ``4.1.2`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/l/lit.md b/docs/version-specific/supported-software/l/lit.md index daec42241b..725371f876 100644 --- a/docs/version-specific/supported-software/l/lit.md +++ b/docs/version-specific/supported-software/l/lit.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``18.1.2`` | ``GCCcore/12.2.0`` ``18.1.2`` | ``GCCcore/12.3.0`` -``18.1.7`` | ``GCCcore/11.2.0`` ``18.1.7`` | ``GCCcore/11.3.0`` ``18.1.7`` | ``GCCcore/12.2.0`` ``18.1.7`` | ``GCCcore/13.2.0`` @@ -20,6 +19,7 @@ version | toolchain ``18.1.8`` | ``GCCcore/13.3.0`` ``18.1.8`` | ``GCCcore/14.2.0`` ``18.1.8`` | ``GCCcore/14.3.0`` +``18.1.8`` | ``GCCcore/15.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/llama.cpp.md b/docs/version-specific/supported-software/l/llama.cpp.md index ba5f0ffab3..6613fcea1e 100644 --- a/docs/version-specific/supported-software/l/llama.cpp.md +++ b/docs/version-specific/supported-software/l/llama.cpp.md @@ -12,6 +12,7 @@ version | versionsuffix | toolchain --------|---------------|---------- ``b4595`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``b4595`` | | ``foss/2023a`` +``b8354`` | ``-CUDA-12.6.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/llvm-compilers.md b/docs/version-specific/supported-software/l/llvm-compilers.md index a470044b97..c367df2f74 100644 --- a/docs/version-specific/supported-software/l/llvm-compilers.md +++ b/docs/version-specific/supported-software/l/llvm-compilers.md @@ -11,6 +11,7 @@ The LLVM Project is a collection of modular and reusable compiler and toolchain version | toolchain --------|---------- ``20.1.8`` | ``system`` +``21.1.8`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/lompi.md b/docs/version-specific/supported-software/l/lompi.md index 9500704b6b..803c05ce33 100644 --- a/docs/version-specific/supported-software/l/lompi.md +++ b/docs/version-specific/supported-software/l/lompi.md @@ -11,6 +11,7 @@ LLVM based compiler toolchain, including OpenMPI for MPI support. version | toolchain --------|---------- ``2025b`` | ``system`` +``2026.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/loompy.md b/docs/version-specific/supported-software/l/loompy.md index fd83910e27..0af86f66e5 100644 --- a/docs/version-specific/supported-software/l/loompy.md +++ b/docs/version-specific/supported-software/l/loompy.md @@ -10,10 +10,8 @@ Python implementation of the Loom file format, an efficient file format for larg version | toolchain --------|---------- -``3.0.7`` | ``foss/2021b`` ``3.0.7`` | ``foss/2022a`` ``3.0.7`` | ``foss/2023a`` -``3.0.7`` | ``intel/2021b`` ``3.0.8`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/l/lpsolve.md b/docs/version-specific/supported-software/l/lpsolve.md index 13f468ba39..e68cd29cbe 100644 --- a/docs/version-specific/supported-software/l/lpsolve.md +++ b/docs/version-specific/supported-software/l/lpsolve.md @@ -10,12 +10,13 @@ Mixed Integer Linear Programming (MILP) solver version | toolchain --------|---------- -``5.5.2.11`` | ``GCC/11.2.0`` ``5.5.2.11`` | ``GCC/11.3.0`` ``5.5.2.11`` | ``GCC/12.2.0`` ``5.5.2.11`` | ``GCC/12.3.0`` ``5.5.2.11`` | ``GCC/13.2.0`` ``5.5.2.11`` | ``GCC/13.3.0`` +``5.5.2.14`` | ``GCC/14.2.0`` +``5.5.2.14`` | ``GCC/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/l/lxml.md b/docs/version-specific/supported-software/l/lxml.md index e759c1499c..c2596c449e 100644 --- a/docs/version-specific/supported-software/l/lxml.md +++ b/docs/version-specific/supported-software/l/lxml.md @@ -10,7 +10,6 @@ The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxs version | toolchain --------|---------- -``4.6.3`` | ``GCCcore/11.2.0`` ``4.9.1`` | ``GCCcore/11.3.0`` ``4.9.2`` | ``GCCcore/12.2.0`` ``4.9.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/l/lz4.md b/docs/version-specific/supported-software/l/lz4.md index 28daa13bfa..53036bbd54 100644 --- a/docs/version-specific/supported-software/l/lz4.md +++ b/docs/version-specific/supported-software/l/lz4.md @@ -13,7 +13,6 @@ version | toolchain ``1.10.0`` | ``GCCcore/14.2.0`` ``1.10.0`` | ``GCCcore/14.3.0`` ``1.10.0`` | ``GCCcore/15.2.0`` -``1.9.3`` | ``GCCcore/11.2.0`` ``1.9.3`` | ``GCCcore/11.3.0`` ``1.9.4`` | ``GCCcore/12.2.0`` ``1.9.4`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/M4.md b/docs/version-specific/supported-software/m/M4.md index 67b5ad0a55..2558cbd0c8 100644 --- a/docs/version-specific/supported-software/m/M4.md +++ b/docs/version-specific/supported-software/m/M4.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``1.4.17`` | ``system`` ``1.4.18`` | ``system`` -``1.4.19`` | ``GCCcore/11.2.0`` ``1.4.19`` | ``GCCcore/11.3.0`` ``1.4.19`` | ``GCCcore/11.4.0`` ``1.4.19`` | ``GCCcore/12.1.0`` diff --git a/docs/version-specific/supported-software/m/MACS2.md b/docs/version-specific/supported-software/m/MACS2.md index f6ca506d3a..4a9dbf8a7c 100644 --- a/docs/version-specific/supported-software/m/MACS2.md +++ b/docs/version-specific/supported-software/m/MACS2.md @@ -10,7 +10,6 @@ Model Based Analysis for ChIP-Seq data version | toolchain --------|---------- -``2.2.7.1`` | ``foss/2021b`` ``2.2.9.1`` | ``foss/2022a`` ``2.2.9.1`` | ``foss/2022b`` ``2.2.9.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/m/MAFFT.md b/docs/version-specific/supported-software/m/MAFFT.md index 40c7323a48..d5cba6b6d8 100644 --- a/docs/version-specific/supported-software/m/MAFFT.md +++ b/docs/version-specific/supported-software/m/MAFFT.md @@ -10,13 +10,13 @@ MAFFT is a multiple sequence alignment program for unix-like operating systems. version | versionsuffix | toolchain --------|---------------|---------- -``7.490`` | ``-with-extensions`` | ``GCC/11.2.0`` -``7.490`` | ``-with-extensions`` | ``gompi/2021b`` ``7.505`` | ``-with-extensions`` | ``GCC/11.3.0`` ``7.505`` | ``-with-extensions`` | ``GCC/12.2.0`` ``7.520`` | ``-with-extensions`` | ``GCC/12.3.0`` ``7.526`` | ``-with-extensions`` | ``GCC/13.2.0`` ``7.526`` | ``-with-extensions`` | ``GCC/13.3.0`` +``7.526`` | ``-with-extensions`` | ``GCC/14.2.0`` +``7.526`` | ``-with-extensions`` | ``GCC/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MAGMA-gene-analysis.md b/docs/version-specific/supported-software/m/MAGMA-gene-analysis.md deleted file mode 100644 index 594cee1af9..0000000000 --- a/docs/version-specific/supported-software/m/MAGMA-gene-analysis.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MAGMA-gene-analysis - -MAGMA is a tool for gene analysis and generalized gene-set analysis of GWAS data. It can be used to analyse both raw genotype data as well as summary SNP p-values from a previous GWAS or meta-analysis. - -*homepage*: - -version | toolchain ---------|---------- -``1.09b`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MAQAO.md b/docs/version-specific/supported-software/m/MAQAO.md index 8529846f90..32f90f4a18 100644 --- a/docs/version-specific/supported-software/m/MAQAO.md +++ b/docs/version-specific/supported-software/m/MAQAO.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2.21.1`` | ``system`` ``2025.1.0`` | ``system`` +``2026.0.0-b`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MATIO.md b/docs/version-specific/supported-software/m/MATIO.md index a313f5526a..496d3ff600 100644 --- a/docs/version-specific/supported-software/m/MATIO.md +++ b/docs/version-specific/supported-software/m/MATIO.md @@ -10,7 +10,6 @@ matio is an C library for reading and writing Matlab MAT files. version | toolchain --------|---------- -``1.5.22`` | ``GCCcore/11.2.0`` ``1.5.23`` | ``GCCcore/11.3.0`` ``1.5.23`` | ``GCCcore/12.1.0`` ``1.5.23`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/m/MATLAB-Engine.md b/docs/version-specific/supported-software/m/MATLAB-Engine.md index 408237178d..987c175b2e 100644 --- a/docs/version-specific/supported-software/m/MATLAB-Engine.md +++ b/docs/version-specific/supported-software/m/MATLAB-Engine.md @@ -10,7 +10,6 @@ The MATLAB Engine API for Python provides a package for Python to call MATLAB a version | toolchain --------|---------- -``2021b-9.11.19`` | ``GCCcore/11.2.0`` ``2024b-24.2.2`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/m/MATLAB.md b/docs/version-specific/supported-software/m/MATLAB.md index 9ec1dfcd4e..49288f98d9 100644 --- a/docs/version-specific/supported-software/m/MATLAB.md +++ b/docs/version-specific/supported-software/m/MATLAB.md @@ -10,7 +10,6 @@ MATLAB is a high-level language and interactive environment that enables you to version | versionsuffix | toolchain --------|---------------|---------- -``2020b`` | | ``system`` ``2021a`` | | ``system`` ``2021b`` | | ``system`` ``2022a`` | ``-r3`` | ``system`` @@ -22,6 +21,7 @@ version | versionsuffix | toolchain ``2024a`` | ``-r7`` | ``system`` ``2024b`` | | ``system`` ``2025a`` | ``-r1`` | ``system`` +``2025b`` | ``-r2`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MATSim.md b/docs/version-specific/supported-software/m/MATSim.md index 59a9a5f9a9..1f9d6a0ee2 100644 --- a/docs/version-specific/supported-software/m/MATSim.md +++ b/docs/version-specific/supported-software/m/MATSim.md @@ -10,7 +10,6 @@ MATSim is an open-source framework to implement large-scale agent-based transpor version | versionsuffix | toolchain --------|---------------|---------- -``14.0`` | ``-Java-11`` | ``GCCcore/11.2.0`` ``14.0`` | ``-Java-11`` | ``system`` ``15.0`` | ``-Java-17`` | ``GCCcore/12.3.0`` ``15.0`` | ``-Java-17`` | ``system`` diff --git a/docs/version-specific/supported-software/m/MCL.md b/docs/version-specific/supported-software/m/MCL.md index d621ea3efe..31b781dec2 100644 --- a/docs/version-specific/supported-software/m/MCL.md +++ b/docs/version-specific/supported-software/m/MCL.md @@ -11,12 +11,12 @@ The MCL algorithm is short for the Markov Cluster Algorithm, a fast and scalable version | toolchain --------|---------- ``14.137`` | ``GCCcore/11.3.0`` -``22.282`` | ``GCCcore/11.2.0`` ``22.282`` | ``GCCcore/11.3.0`` ``22.282`` | ``GCCcore/12.3.0`` ``22.282`` | ``GCCcore/13.2.0`` ``22.282`` | ``GCCcore/13.3.0`` ``22.282`` | ``GCCcore/14.2.0`` +``22.282`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MCR.md b/docs/version-specific/supported-software/m/MCR.md index ff6d7cd1b3..abe2703cb1 100644 --- a/docs/version-specific/supported-software/m/MCR.md +++ b/docs/version-specific/supported-software/m/MCR.md @@ -11,9 +11,6 @@ The MATLAB Runtime is a standalone set of shared libraries that enables the exe version | versionsuffix | toolchain --------|---------------|---------- ``R2019b`` | ``.8`` | ``system`` -``R2020a`` | ``.6`` | ``system`` -``R2020b`` | ``.5`` | ``system`` -``R2021a`` | ``.0`` | ``system`` ``R2021a`` | ``.3`` | ``system`` ``R2021b`` | ``.1`` | ``system`` ``R2021b`` | ``.2`` | ``system`` diff --git a/docs/version-specific/supported-software/m/MDAnalysis.md b/docs/version-specific/supported-software/m/MDAnalysis.md index 8f9116a61e..dc57affe70 100644 --- a/docs/version-specific/supported-software/m/MDAnalysis.md +++ b/docs/version-specific/supported-software/m/MDAnalysis.md @@ -10,8 +10,6 @@ MDAnalysis is an object-oriented Python library to analyze trajectories from mol version | toolchain --------|---------- -``2.0.0`` | ``foss/2021b`` -``2.0.0`` | ``intel/2021b`` ``2.10.0`` | ``foss/2025b`` ``2.2.0`` | ``foss/2022a`` ``2.4.2`` | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/b/Bader.md b/docs/version-specific/supported-software/m/MDBM.md similarity index 83% rename from docs/version-specific/supported-software/b/Bader.md rename to docs/version-specific/supported-software/m/MDBM.md index d4c0fc7d98..f4256ab06a 100644 --- a/docs/version-specific/supported-software/b/Bader.md +++ b/docs/version-specific/supported-software/m/MDBM.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# Bader +# MDBM -Bader Charge Analysis +MDBM is a super-fast memory-mapped key/value store -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.04`` | ``GCC/11.2.0`` +``4.13.0`` | ``GCCcore/13.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MDTraj.md b/docs/version-specific/supported-software/m/MDTraj.md index e1fc394d44..457fbf5ddf 100644 --- a/docs/version-specific/supported-software/m/MDTraj.md +++ b/docs/version-specific/supported-software/m/MDTraj.md @@ -14,9 +14,7 @@ version | toolchain ``1.10.3`` | ``foss/2024a`` ``1.11.0`` | ``foss/2025a`` ``1.11.0`` | ``foss/2025b`` -``1.9.7`` | ``foss/2021b`` ``1.9.7`` | ``foss/2022a`` -``1.9.7`` | ``intel/2021b`` ``1.9.7`` | ``intel/2022a`` ``1.9.9`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/m/MEGAHIT.md b/docs/version-specific/supported-software/m/MEGAHIT.md index dad8f35caa..a8e511c48b 100644 --- a/docs/version-specific/supported-software/m/MEGAHIT.md +++ b/docs/version-specific/supported-software/m/MEGAHIT.md @@ -10,7 +10,6 @@ An ultra-fast single-node solution for large and complex metagenomics assembly v version | versionsuffix | toolchain --------|---------------|---------- -``1.2.9`` | | ``GCCcore/11.2.0`` ``1.2.9`` | | ``GCCcore/11.3.0`` ``1.2.9`` | | ``GCCcore/12.2.0`` ``1.2.9`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/MEME.md b/docs/version-specific/supported-software/m/MEME.md index 23ec5fbfbc..2617e98f11 100644 --- a/docs/version-specific/supported-software/m/MEME.md +++ b/docs/version-specific/supported-software/m/MEME.md @@ -8,12 +8,11 @@ The MEME Suite allows you to: * discover motifs using MEME, DREME (DNA only) or *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.4.1`` | ``-Python-2.7.18`` | ``gompi/2021b`` -``5.4.1`` | | ``gompi/2021b`` -``5.5.4`` | | ``gompi/2022b`` -``5.5.7`` | | ``gompi/2023b`` +version | toolchain +--------|---------- +``5.5.4`` | ``gompi/2022b`` +``5.5.7`` | ``gompi/2023b`` +``5.5.9`` | ``gompi/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/METIS.md b/docs/version-specific/supported-software/m/METIS.md index 5a5f0299fe..2c3762875d 100644 --- a/docs/version-specific/supported-software/m/METIS.md +++ b/docs/version-specific/supported-software/m/METIS.md @@ -10,7 +10,6 @@ METIS is a set of serial programs for partitioning graphs, partitioning finite version | versionsuffix | toolchain --------|---------------|---------- -``5.1.0`` | | ``GCCcore/11.2.0`` ``5.1.0`` | ``-int64`` | ``GCCcore/11.3.0`` ``5.1.0`` | | ``GCCcore/11.3.0`` ``5.1.0`` | | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/m/MIGRATE-N.md b/docs/version-specific/supported-software/m/MIGRATE-N.md index 1f590fe1d7..d14f593be5 100644 --- a/docs/version-specific/supported-software/m/MIGRATE-N.md +++ b/docs/version-specific/supported-software/m/MIGRATE-N.md @@ -10,7 +10,6 @@ Migrate estimates population parameters, effective population sizes and migratio version | toolchain --------|---------- -``5.0.4`` | ``foss/2021b`` ``5.0.8`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/m/MMseqs2.md b/docs/version-specific/supported-software/m/MMseqs2.md index c1c3d61364..2a7421b921 100644 --- a/docs/version-specific/supported-software/m/MMseqs2.md +++ b/docs/version-specific/supported-software/m/MMseqs2.md @@ -10,12 +10,12 @@ MMseqs2: ultra fast and sensitive search and clustering suite version | toolchain --------|---------- -``13-45111`` | ``gompi/2021b`` ``14-7e284`` | ``gompi/2022a`` ``14-7e284`` | ``gompi/2023a`` ``15-6f452`` | ``gompi/2023b`` ``17-b804f`` | ``gompi/2024a`` ``18-8cc5c`` | ``gompi/2025a`` +``18-8cc5c`` | ``gompi/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MONA.md b/docs/version-specific/supported-software/m/MONA.md deleted file mode 100644 index 88f17b0303..0000000000 --- a/docs/version-specific/supported-software/m/MONA.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MONA - -MONA is a tool that translates formulas to finite-state automata. The formulas may express search patterns, temporal properties of reactive systems, parse tree constraints, etc. MONA analyses the automaton resulting from the compilation and prints out "valid" or a counter-example. - -*homepage*: - -version | toolchain ---------|---------- -``1.4-18`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MPC.md b/docs/version-specific/supported-software/m/MPC.md index 784e12c9c6..87f3451ea4 100644 --- a/docs/version-specific/supported-software/m/MPC.md +++ b/docs/version-specific/supported-software/m/MPC.md @@ -10,7 +10,6 @@ Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily h version | toolchain --------|---------- -``1.2.1`` | ``GCCcore/11.2.0`` ``1.2.1`` | ``GCCcore/11.3.0`` ``1.3.1`` | ``GCCcore/12.2.0`` ``1.3.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/MPFR.md b/docs/version-specific/supported-software/m/MPFR.md index 5075e0ed0e..17b3fb601e 100644 --- a/docs/version-specific/supported-software/m/MPFR.md +++ b/docs/version-specific/supported-software/m/MPFR.md @@ -10,7 +10,6 @@ The MPFR library is a C library for multiple-precision floating-point computati version | toolchain --------|---------- -``4.1.0`` | ``GCCcore/11.2.0`` ``4.1.0`` | ``GCCcore/11.3.0`` ``4.2.0`` | ``GCCcore/12.2.0`` ``4.2.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/MUMPS.md b/docs/version-specific/supported-software/m/MUMPS.md index 4e7bc68a18..c6421d1995 100644 --- a/docs/version-specific/supported-software/m/MUMPS.md +++ b/docs/version-specific/supported-software/m/MUMPS.md @@ -10,8 +10,6 @@ A parallel sparse direct solver version | versionsuffix | toolchain --------|---------------|---------- -``5.4.1`` | ``-metis`` | ``foss/2021b`` -``5.4.1`` | ``-metis`` | ``intel/2021b`` ``5.5.1`` | ``-metis`` | ``foss/2022a`` ``5.6.1`` | ``-metis`` | ``foss/2022b`` ``5.6.1`` | ``-metis`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/m/MUMmer.md b/docs/version-specific/supported-software/m/MUMmer.md index 4f99e19526..6c710fa45c 100644 --- a/docs/version-specific/supported-software/m/MUMmer.md +++ b/docs/version-specific/supported-software/m/MUMmer.md @@ -6,16 +6,16 @@ search: MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. AMOS makes use of it. -*homepage*: +*homepage*: version | toolchain --------|---------- -``4.0.0beta2`` | ``GCCcore/11.2.0`` -``4.0.0rc1`` | ``GCCcore/11.2.0`` ``4.0.0rc1`` | ``GCCcore/11.3.0`` ``4.0.0rc1`` | ``GCCcore/12.2.0`` ``4.0.0rc1`` | ``GCCcore/12.3.0`` ``4.0.1`` | ``GCCcore/12.3.0`` +``4.0.1`` | ``GCCcore/13.3.0`` +``4.0.1`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MUSCLE.md b/docs/version-specific/supported-software/m/MUSCLE.md index a05fc8c2d5..cace74e097 100644 --- a/docs/version-specific/supported-software/m/MUSCLE.md +++ b/docs/version-specific/supported-software/m/MUSCLE.md @@ -10,8 +10,6 @@ MUSCLE is one of the best-performing multiple alignment programs according to p version | toolchain --------|---------- -``3.8.31`` | ``GCCcore/11.2.0`` -``5.1`` | ``GCCcore/11.2.0`` ``5.1.0`` | ``GCCcore/11.3.0`` ``5.1.0`` | ``GCCcore/12.2.0`` ``5.1.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/Mako.md b/docs/version-specific/supported-software/m/Mako.md index 6986979f14..2846175237 100644 --- a/docs/version-specific/supported-software/m/Mako.md +++ b/docs/version-specific/supported-software/m/Mako.md @@ -10,7 +10,6 @@ A super-fast templating language that borrows the best ideas from the existing t version | toolchain --------|---------- -``1.1.4`` | ``GCCcore/11.2.0`` ``1.2.0`` | ``GCCcore/11.3.0`` ``1.2.4`` | ``GCCcore/12.2.0`` ``1.2.4`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/MariaDB.md b/docs/version-specific/supported-software/m/MariaDB.md index d3179e3f3f..540005fabe 100644 --- a/docs/version-specific/supported-software/m/MariaDB.md +++ b/docs/version-specific/supported-software/m/MariaDB.md @@ -11,7 +11,6 @@ MariaDB is an enhanced, drop-in replacement for MySQL. Included engines: myISAM, version | toolchain --------|---------- ``10.11.2`` | ``GCC/12.2.0`` -``10.6.4`` | ``GCC/11.2.0`` ``10.9.3`` | ``GCC/11.3.0`` ``11.6.0`` | ``GCC/12.3.0`` ``11.7.0`` | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/m/Mash.md b/docs/version-specific/supported-software/m/Mash.md index a1b3f1ca31..e3f2c60bfa 100644 --- a/docs/version-specific/supported-software/m/Mash.md +++ b/docs/version-specific/supported-software/m/Mash.md @@ -10,13 +10,11 @@ Fast genome and metagenome distance estimation using MinHash version | toolchain --------|---------- -``2.3`` | ``GCC/11.2.0`` ``2.3`` | ``GCC/11.3.0`` ``2.3`` | ``GCC/12.2.0`` ``2.3`` | ``GCC/12.3.0`` ``2.3`` | ``GCC/13.2.0`` ``2.3`` | ``GCC/13.3.0`` -``2.3`` | ``intel-compilers/2021.4.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/MathWorksServiceHost.md b/docs/version-specific/supported-software/m/MathWorksServiceHost.md index 9c91bb1111..ed77b685b0 100644 --- a/docs/version-specific/supported-software/m/MathWorksServiceHost.md +++ b/docs/version-specific/supported-software/m/MathWorksServiceHost.md @@ -11,6 +11,7 @@ MathWorks Service Host is a collection of background processes that provide req version | toolchain --------|---------- ``2024.13.0.2`` | ``system`` +``2025.11.1.2`` | ``system`` ``2025.5.1.1`` | ``system`` ``2025.9.0.2`` | ``system`` diff --git a/docs/version-specific/supported-software/m/Maven.md b/docs/version-specific/supported-software/m/Maven.md index e1f031e4d3..869bb5a011 100644 --- a/docs/version-specific/supported-software/m/Maven.md +++ b/docs/version-specific/supported-software/m/Maven.md @@ -10,7 +10,6 @@ Binary maven install, Apache Maven is a software project management and comprehe version | versionsuffix | toolchain --------|---------------|---------- -``3.6.3`` | | ``system`` ``3.9.11`` | ``-Java-21`` | ``system`` ``3.9.7`` | | ``system`` diff --git a/docs/version-specific/supported-software/m/MaxBin.md b/docs/version-specific/supported-software/m/MaxBin.md index 5a32cad898..14a4ac5a2d 100644 --- a/docs/version-specific/supported-software/m/MaxBin.md +++ b/docs/version-specific/supported-software/m/MaxBin.md @@ -10,7 +10,6 @@ MaxBin is software for binning assembled metagenomic sequences based on an Expec version | versionsuffix | toolchain --------|---------------|---------- -``2.2.7`` | | ``gompi/2021b`` ``2.2.7`` | ``-Python-2.7.18`` | ``gompi/2023a`` ``2.2.7`` | | ``gompi/2023b`` diff --git a/docs/version-specific/supported-software/m/MaxQuant.md b/docs/version-specific/supported-software/m/MaxQuant.md index 208178d571..92b8e06e14 100644 --- a/docs/version-specific/supported-software/m/MaxQuant.md +++ b/docs/version-specific/supported-software/m/MaxQuant.md @@ -10,8 +10,6 @@ MaxQuant is a quantitative proteomics software package designed for analyzing la version | toolchain --------|---------- -``2.0.3.0`` | ``GCCcore/11.2.0`` -``2.2.0.0`` | ``GCCcore/11.2.0`` ``2.6.7.0`` | ``system`` diff --git a/docs/version-specific/supported-software/m/Mesa.md b/docs/version-specific/supported-software/m/Mesa.md index f3e17d4f18..793593a778 100644 --- a/docs/version-specific/supported-software/m/Mesa.md +++ b/docs/version-specific/supported-software/m/Mesa.md @@ -10,7 +10,6 @@ Mesa is an open-source implementation of the OpenGL specification - a system fo version | toolchain --------|---------- -``21.1.7`` | ``GCCcore/11.2.0`` ``22.0.3`` | ``GCCcore/11.3.0`` ``22.2.4`` | ``GCCcore/12.2.0`` ``23.1.4`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/Meson.md b/docs/version-specific/supported-software/m/Meson.md index 8196903828..44d066baf3 100644 --- a/docs/version-specific/supported-software/m/Meson.md +++ b/docs/version-specific/supported-software/m/Meson.md @@ -10,10 +10,10 @@ Meson is a cross-platform build system designed to be both as fast and as user f version | toolchain --------|---------- -``0.58.2`` | ``GCCcore/11.2.0`` ``0.62.1`` | ``GCCcore/11.3.0`` ``0.64.0`` | ``GCCcore/12.2.0`` ``1.1.1`` | ``GCCcore/12.3.0`` +``1.10.2`` | ``GCCcore/15.2.0`` ``1.2.3`` | ``GCCcore/13.2.0`` ``1.3.1`` | ``GCCcore/12.3.0`` ``1.4.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/MetaBAT.md b/docs/version-specific/supported-software/m/MetaBAT.md index 6624de3e62..69d089578e 100644 --- a/docs/version-specific/supported-software/m/MetaBAT.md +++ b/docs/version-specific/supported-software/m/MetaBAT.md @@ -10,8 +10,6 @@ MetaBAT: A robust statistical framework for reconstructing genomes from metageno version | toolchain --------|---------- -``2.15`` | ``GCC/11.2.0`` -``2.15`` | ``gompi/2021b`` ``2.17`` | ``GCC/12.3.0`` ``2.17`` | ``GCC/13.2.0`` ``2.17`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/m/MetaEuk.md b/docs/version-specific/supported-software/m/MetaEuk.md index de05c87596..ea4f9313d8 100644 --- a/docs/version-specific/supported-software/m/MetaEuk.md +++ b/docs/version-specific/supported-software/m/MetaEuk.md @@ -10,7 +10,6 @@ MetaEuk is a modular toolkit designed for large-scale gene discovery and annotat version | toolchain --------|---------- -``6`` | ``GCC/11.2.0`` ``6`` | ``GCC/11.3.0`` ``6`` | ``GCC/12.2.0`` ``6`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/m/MetaGeneAnnotator.md b/docs/version-specific/supported-software/m/MetaGeneAnnotator.md deleted file mode 100644 index 66bab203f6..0000000000 --- a/docs/version-specific/supported-software/m/MetaGeneAnnotator.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MetaGeneAnnotator - -MetaGeneAnnotator is a gene-finding program for prokaryote and phage. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``20080819`` | ``-x86-64`` | ``system`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/MethylDackel.md b/docs/version-specific/supported-software/m/MethylDackel.md deleted file mode 100644 index cf2605970e..0000000000 --- a/docs/version-specific/supported-software/m/MethylDackel.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MethylDackel - -A (mostly) universal methylation extractor for BS-seq experiments. - -*homepage*: - -version | toolchain ---------|---------- -``0.6.1`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/Miller.md b/docs/version-specific/supported-software/m/Miller.md index 494b1f0cd0..5e9f1c32e9 100644 --- a/docs/version-specific/supported-software/m/Miller.md +++ b/docs/version-specific/supported-software/m/Miller.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``6.15.0`` | ``system`` ``6.16.0`` | ``system`` +``6.17.0`` | ``system`` ``6.4.0`` | ``system`` diff --git a/docs/version-specific/supported-software/m/MinIONQC.md b/docs/version-specific/supported-software/m/MinIONQC.md index 0c2f0830e3..bee0cda388 100644 --- a/docs/version-specific/supported-software/m/MinIONQC.md +++ b/docs/version-specific/supported-software/m/MinIONQC.md @@ -10,6 +10,7 @@ Fast and effective quality control for MinION and PromethION sequencing data version | versionsuffix | toolchain --------|---------------|---------- +``1.4.2-20221020`` | ``-R-4.4.1`` | ``foss/2023b`` ``1.4.2`` | ``-R-4.4.1`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/m/MinPath.md b/docs/version-specific/supported-software/m/MinPath.md index 15af839016..82ef5a191e 100644 --- a/docs/version-specific/supported-software/m/MinPath.md +++ b/docs/version-specific/supported-software/m/MinPath.md @@ -10,7 +10,6 @@ MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway version | toolchain --------|---------- -``1.6`` | ``GCCcore/11.2.0`` ``1.6`` | ``GCCcore/12.3.0`` ``1.6`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/m/Mini-XML.md b/docs/version-specific/supported-software/m/Mini-XML.md deleted file mode 100644 index 1142b966b2..0000000000 --- a/docs/version-specific/supported-software/m/Mini-XML.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Mini-XML - -Mini-XML is a small XML parsing library that you can use to read XML data files or strings in your application without requiring large non-standard libraries - -*homepage*: - -version | toolchain ---------|---------- -``3.3.1`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/Minimac4.md b/docs/version-specific/supported-software/m/Minimac4.md index d272f3df80..f9fbbf4444 100644 --- a/docs/version-specific/supported-software/m/Minimac4.md +++ b/docs/version-specific/supported-software/m/Minimac4.md @@ -11,6 +11,7 @@ Minimac4 is a latest version in the series of genotype imputation software - pr version | toolchain --------|---------- ``4.1.6`` | ``GCC/12.3.0`` +``4.1.6`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Minipolish.md b/docs/version-specific/supported-software/m/Minipolish.md deleted file mode 100644 index cab2dced12..0000000000 --- a/docs/version-specific/supported-software/m/Minipolish.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Minipolish - -A tool for Racon polishing of miniasm assemblies - -*homepage*: - -version | toolchain ---------|---------- -``0.1.3`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/Mmg.md b/docs/version-specific/supported-software/m/Mmg.md index 3b9b9ea6e8..6033c15ab0 100644 --- a/docs/version-specific/supported-software/m/Mmg.md +++ b/docs/version-specific/supported-software/m/Mmg.md @@ -10,7 +10,6 @@ Mmg is an open source software for simplicial remeshing. It provides 3 applicati version | toolchain --------|---------- -``5.6.0`` | ``gompi/2021b`` ``5.7.2`` | ``gompi/2022a`` ``5.8.0`` | ``gompi/2024a`` diff --git a/docs/version-specific/supported-software/m/ModelTest-NG.md b/docs/version-specific/supported-software/m/ModelTest-NG.md index 3ba8069360..ec637c8069 100644 --- a/docs/version-specific/supported-software/m/ModelTest-NG.md +++ b/docs/version-specific/supported-software/m/ModelTest-NG.md @@ -10,8 +10,8 @@ ModelTest-NG is a tool for selecting the best-fit model of evolution for DNA and version | toolchain --------|---------- -``0.1.7`` | ``gompi/2021b`` ``0.2.0-dev_20220721`` | ``GCC/12.3.0`` +``0.2.0-dev_20220721`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/Mono.md b/docs/version-specific/supported-software/m/Mono.md index 3e83706057..359b5c62f3 100644 --- a/docs/version-specific/supported-software/m/Mono.md +++ b/docs/version-specific/supported-software/m/Mono.md @@ -10,7 +10,6 @@ An open source, cross-platform, implementation of C# and the CLR that is binary version | toolchain --------|---------- -``6.12.0.122`` | ``GCCcore/11.2.0`` ``6.12.0.199`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/m/MoviePy.md b/docs/version-specific/supported-software/m/MoviePy.md index f225ed0034..e35958e7be 100644 --- a/docs/version-specific/supported-software/m/MoviePy.md +++ b/docs/version-specific/supported-software/m/MoviePy.md @@ -10,7 +10,6 @@ MoviePy (full documentation) is a Python library for video editing: cutting, con version | toolchain --------|---------- -``1.0.3`` | ``foss/2021b`` ``1.0.3`` | ``foss/2022b`` ``2.2.1`` | ``foss/2025b`` diff --git a/docs/version-specific/supported-software/m/MuJoCo.md b/docs/version-specific/supported-software/m/MuJoCo.md index 9accf8f97c..bcff9584f6 100644 --- a/docs/version-specific/supported-software/m/MuJoCo.md +++ b/docs/version-specific/supported-software/m/MuJoCo.md @@ -10,7 +10,6 @@ MuJoCo stands for Multi-Joint dynamics with Contact. It is a general purpose phy version | toolchain --------|---------- -``2.1.1`` | ``GCCcore/11.2.0`` ``2.2.2`` | ``GCCcore/11.3.0`` ``3.1.4`` | ``GCCcore/12.3.0`` ``3.3.0`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/m/MultiQC.md b/docs/version-specific/supported-software/m/MultiQC.md index db4cb98218..263e06aedb 100644 --- a/docs/version-specific/supported-software/m/MultiQC.md +++ b/docs/version-specific/supported-software/m/MultiQC.md @@ -10,7 +10,6 @@ Aggregate results from bioinformatics analyses across many samples into a single version | toolchain --------|---------- -``1.12`` | ``foss/2021b`` ``1.14`` | ``foss/2022a`` ``1.14`` | ``foss/2022b`` ``1.20`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/m/MultilevelEstimators.md b/docs/version-specific/supported-software/m/MultilevelEstimators.md deleted file mode 100644 index 815099fb2b..0000000000 --- a/docs/version-specific/supported-software/m/MultilevelEstimators.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# MultilevelEstimators - -The Julia module for Multilevel Monte Carlo methods - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.1.0`` | ``-Julia-1.7.2`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/index.md b/docs/version-specific/supported-software/m/index.md index a3abe03441..cb5030cd8f 100644 --- a/docs/version-specific/supported-software/m/index.md +++ b/docs/version-specific/supported-software/m/index.md @@ -23,7 +23,6 @@ search: * [Magics](Magics.md) * [MagicVLSI](MagicVLSI.md) * [magma](magma.md) - * [MAGMA-gene-analysis](MAGMA-gene-analysis.md) * [mahotas](mahotas.md) * [make](make.md) * [makedepend](makedepend.md) @@ -35,6 +34,7 @@ search: * [Mamba](Mamba.md) * [Mamba-SSM](Mamba-SSM.md) * [mandrake](mandrake.md) + * [mango-auth](mango-auth.md) * [mannkendall](mannkendall.md) * [manta](manta.md) * [mapDamage](mapDamage.md) @@ -71,6 +71,7 @@ search: * [mctc-lib](mctc-lib.md) * [McXtrace](McXtrace.md) * [MDAnalysis](MDAnalysis.md) + * [MDBM](MDBM.md) * [MDI](MDI.md) * [mdocfile](mdocfile.md) * [MDSplus](MDSplus.md) @@ -99,7 +100,6 @@ search: * [MetaBAT](MetaBAT.md) * [MetaDecoder](MetaDecoder.md) * [MetaEuk](MetaEuk.md) - * [MetaGeneAnnotator](MetaGeneAnnotator.md) * [MetaGeneMark-2](MetaGeneMark-2.md) * [metakernel](metakernel.md) * [MetalWalls](MetalWalls.md) @@ -108,9 +108,6 @@ search: * [MetaPhlAn](MetaPhlAn.md) * [metaWRAP](metaWRAP.md) * [meteogrid](meteogrid.md) - * [methylartist](methylartist.md) - * [MethylDackel](MethylDackel.md) - * [methylpy](methylpy.md) * [METIS](METIS.md) * [MFEM](MFEM.md) * [MFiX](MFiX.md) @@ -124,9 +121,7 @@ search: * [MIGRATE-N](MIGRATE-N.md) * [Mikado](Mikado.md) * [Miller](Miller.md) - * [mimalloc](mimalloc.md) * [MinCED](MinCED.md) - * [Mini-XML](Mini-XML.md) * [miniasm](miniasm.md) * [Miniconda3](Miniconda3.md) * [Miniforge3](Miniforge3.md) @@ -134,7 +129,6 @@ search: * [Minimac4](Minimac4.md) * [minimap2](minimap2.md) * [MinIONQC](MinIONQC.md) - * [Minipolish](Minipolish.md) * [miniprot](miniprot.md) * [minizip](minizip.md) * [minizip-ng](minizip-ng.md) @@ -145,7 +139,6 @@ search: * [MitoHiFi](MitoHiFi.md) * [MiXCR](MiXCR.md) * [MixMHC2pred](MixMHC2pred.md) - * [mkl-service](mkl-service.md) * [ml-collections](ml-collections.md) * [ml_dtypes](ml_dtypes.md) * [MLflow](MLflow.md) @@ -171,7 +164,6 @@ search: * [MoloVol](MoloVol.md) * [Molpro](Molpro.md) * [momepy](momepy.md) - * [MONA](MONA.md) * [MONAI](MONAI.md) * [MONAI-Label](MONAI-Label.md) * [MongoDB](MongoDB.md) @@ -211,11 +203,9 @@ search: * [msprime](msprime.md) * [mstore](mstore.md) * [MuJoCo](MuJoCo.md) - * [mujoco-py](mujoco-py.md) * [multicharge](multicharge.md) * [multichoose](multichoose.md) * [MulticoreTSNE](MulticoreTSNE.md) - * [MultilevelEstimators](MultilevelEstimators.md) * [multiprocess](multiprocess.md) * [MultiQC](MultiQC.md) * [mumax3](mumax3.md) @@ -231,6 +221,7 @@ search: * [Mustache](Mustache.md) * [MView](MView.md) * [MXNet](MXNet.md) + * [mycotools](mycotools.md) * [mygene](mygene.md) * [mypy](mypy.md) * [mzmine](mzmine.md) diff --git a/docs/version-specific/supported-software/m/magma.md b/docs/version-specific/supported-software/m/magma.md index 6b6801f71f..c67d4c245a 100644 --- a/docs/version-specific/supported-software/m/magma.md +++ b/docs/version-specific/supported-software/m/magma.md @@ -10,14 +10,13 @@ The MAGMA project aims to develop a dense linear algebra library similar to LAP version | versionsuffix | toolchain --------|---------------|---------- -``2.6.2`` | ``-CUDA-11.4.1`` | ``foss/2021b`` -``2.6.2`` | ``-CUDA-11.5.2`` | ``foss/2021b`` ``2.6.2`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``2.7.1`` | ``-CUDA-11.7.0`` | ``foss/2022b`` ``2.7.1`` | ``-CUDA-12.0.0`` | ``foss/2022b`` ``2.7.2`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``2.7.2`` | ``-CUDA-12.4.0`` | ``foss/2023b`` ``2.9.0`` | ``-CUDA-12.6.0`` | ``foss/2024a`` +``2.9.0`` | ``-CUDA-12.8.0`` | ``foss/2025a`` ``2.9.0`` | ``-CUDA-12.9.1`` | ``foss/2025b`` diff --git a/docs/version-specific/supported-software/m/make.md b/docs/version-specific/supported-software/m/make.md index e179efcdb7..4e4ab8efe2 100644 --- a/docs/version-specific/supported-software/m/make.md +++ b/docs/version-specific/supported-software/m/make.md @@ -10,7 +10,6 @@ GNU version of make utility version | toolchain --------|---------- -``4.3`` | ``GCCcore/11.2.0`` ``4.3`` | ``GCCcore/11.3.0`` ``4.3`` | ``GCCcore/12.2.0`` ``4.4.1`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/m/makeinfo.md b/docs/version-specific/supported-software/m/makeinfo.md index f5c15159bb..6616f7e488 100644 --- a/docs/version-specific/supported-software/m/makeinfo.md +++ b/docs/version-specific/supported-software/m/makeinfo.md @@ -10,7 +10,6 @@ makeinfo is part of the Texinfo project, the official documentation format of th version | toolchain --------|---------- -``6.8`` | ``GCCcore/11.2.0`` ``6.8`` | ``GCCcore/11.3.0`` ``7.0.3`` | ``GCCcore/12.2.0`` ``7.0.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/mango-auth.md b/docs/version-specific/supported-software/m/mango-auth.md new file mode 100644 index 0000000000..a525ccfe70 --- /dev/null +++ b/docs/version-specific/supported-software/m/mango-auth.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# mango-auth + +Mango Auth is a small python module to authenticate using interactive PAM authentication against an iRODS installation, opening web browser links as needed. + +*homepage*: + +version | toolchain +--------|---------- +``0.0.11`` | ``GCCcore/13.3.0`` +``0.0.11`` | ``GCCcore/14.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/m/mapDamage.md b/docs/version-specific/supported-software/m/mapDamage.md index e1d28a605e..4f91710e98 100644 --- a/docs/version-specific/supported-software/m/mapDamage.md +++ b/docs/version-specific/supported-software/m/mapDamage.md @@ -10,7 +10,6 @@ mapDamage2 is a computational framework written in Python and R, which track version | toolchain --------|---------- -``2.2.1`` | ``foss/2021b`` ``2.2.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/m/matplotlib.md b/docs/version-specific/supported-software/m/matplotlib.md index 30af3d5c34..e4cbf80ffe 100644 --- a/docs/version-specific/supported-software/m/matplotlib.md +++ b/docs/version-specific/supported-software/m/matplotlib.md @@ -10,14 +10,10 @@ matplotlib is a python 2D plotting library which produces publication quality fi version | versionsuffix | toolchain --------|---------------|---------- -``2.2.5`` | ``-Python-2.7.18`` | ``foss/2021b`` ``2.2.5`` | ``-Python-2.7.18`` | ``foss/2023a`` ``3.10.3`` | | ``gfbf/2025a`` ``3.10.5`` | | ``gfbf/2025b`` ``3.10.5`` | | ``iimkl/2025b`` -``3.4.3`` | | ``foss/2021b`` -``3.4.3`` | | ``intel/2021b`` -``3.5.2`` | | ``foss/2021b`` ``3.5.2`` | | ``foss/2022a`` ``3.5.2`` | | ``intel/2022a`` ``3.7.0`` | | ``gfbf/2022b`` diff --git a/docs/version-specific/supported-software/m/mayavi.md b/docs/version-specific/supported-software/m/mayavi.md index 8f5097017f..7b3c0f4c73 100644 --- a/docs/version-specific/supported-software/m/mayavi.md +++ b/docs/version-specific/supported-software/m/mayavi.md @@ -10,7 +10,6 @@ The Mayavi scientific data 3-dimensional visualizer version | toolchain --------|---------- -``4.7.4`` | ``foss/2021b`` ``4.8.3`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/m/medaka.md b/docs/version-specific/supported-software/m/medaka.md index fdc02abb68..a371d0d4e2 100644 --- a/docs/version-specific/supported-software/m/medaka.md +++ b/docs/version-specific/supported-software/m/medaka.md @@ -16,7 +16,6 @@ version | versionsuffix | toolchain ``1.12.0`` | | ``foss/2023a`` ``1.12.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``1.12.1`` | | ``foss/2023a`` -``1.6.0`` | | ``foss/2021b`` ``1.8.1`` | | ``foss/2022a`` ``1.9.1`` | | ``foss/2022a`` ``1.9.1`` | | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/m/methylartist.md b/docs/version-specific/supported-software/m/methylartist.md deleted file mode 100644 index 42256ca323..0000000000 --- a/docs/version-specific/supported-software/m/methylartist.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# methylartist - -Tools for plotting methylation data in various ways - -*homepage*: - -version | toolchain ---------|---------- -``1.2.6`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/methylpy.md b/docs/version-specific/supported-software/m/methylpy.md deleted file mode 100644 index 28626c6669..0000000000 --- a/docs/version-specific/supported-software/m/methylpy.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# methylpy - -Bisulfite sequencing data processing and differential methylation analysis. - -*homepage*: - -version | toolchain ---------|---------- -``1.2.9`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/mimalloc.md b/docs/version-specific/supported-software/m/mimalloc.md deleted file mode 100644 index c02a2de3c2..0000000000 --- a/docs/version-specific/supported-software/m/mimalloc.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mimalloc - -mimalloc is a general purpose allocator with excellent performance characteristics. - -*homepage*: - -version | toolchain ---------|---------- -``1.7.2`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/miniasm.md b/docs/version-specific/supported-software/m/miniasm.md index 6abe9a4c8f..5671bdc6f9 100644 --- a/docs/version-specific/supported-software/m/miniasm.md +++ b/docs/version-specific/supported-software/m/miniasm.md @@ -6,12 +6,12 @@ search: Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads. -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.3-20191007`` | ``GCCcore/11.2.0`` ``0.3-20191007`` | ``GCCcore/12.3.0`` +``0.3-20191007`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/minimap2.md b/docs/version-specific/supported-software/m/minimap2.md index db68b9b6fb..1ae1d39c6e 100644 --- a/docs/version-specific/supported-software/m/minimap2.md +++ b/docs/version-specific/supported-software/m/minimap2.md @@ -10,8 +10,6 @@ Minimap2 is a fast sequence mapping and alignment program that can find overlaps version | toolchain --------|---------- -``2.22`` | ``GCCcore/11.2.0`` -``2.24`` | ``GCCcore/11.2.0`` ``2.24`` | ``GCCcore/11.3.0`` ``2.26`` | ``GCCcore/12.2.0`` ``2.26`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/minizip.md b/docs/version-specific/supported-software/m/minizip.md index 02dd1bff57..0cfeabd5f1 100644 --- a/docs/version-specific/supported-software/m/minizip.md +++ b/docs/version-specific/supported-software/m/minizip.md @@ -10,8 +10,10 @@ Mini zip and unzip based on zlib version | toolchain --------|---------- -``1.1`` | ``GCCcore/11.2.0`` ``1.1`` | ``GCCcore/12.3.0`` +``1.1`` | ``GCCcore/13.3.0`` +``1.1`` | ``GCCcore/14.2.0`` +``1.1`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mkl-service.md b/docs/version-specific/supported-software/m/mkl-service.md deleted file mode 100644 index f77ca0cda9..0000000000 --- a/docs/version-specific/supported-software/m/mkl-service.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mkl-service - -Python hooks for Intel(R) Math Kernel Library runtime control settings. - -*homepage*: - -version | toolchain ---------|---------- -``2.3.0`` | ``intel/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/ml-collections.md b/docs/version-specific/supported-software/m/ml-collections.md index 798b701f20..9702f45f10 100644 --- a/docs/version-specific/supported-software/m/ml-collections.md +++ b/docs/version-specific/supported-software/m/ml-collections.md @@ -13,6 +13,7 @@ version | toolchain ``0.1.1`` | ``foss/2022a`` ``0.1.1`` | ``foss/2023a`` ``1.1.0`` | ``foss/2024a`` +``1.1.0`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mlst.md b/docs/version-specific/supported-software/m/mlst.md index a226e0014a..1e79c9efa8 100644 --- a/docs/version-specific/supported-software/m/mlst.md +++ b/docs/version-specific/supported-software/m/mlst.md @@ -11,6 +11,7 @@ Scan contig files against PubMLST typing schemes version | toolchain --------|---------- ``2.23.0`` | ``foss/2023a`` +``2.32.2`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mold.md b/docs/version-specific/supported-software/m/mold.md index cb3d6f10b2..ab9d40064f 100644 --- a/docs/version-specific/supported-software/m/mold.md +++ b/docs/version-specific/supported-software/m/mold.md @@ -10,8 +10,6 @@ mold is a high-performance drop-in replacement for existing Unix linkers. version | toolchain --------|---------- -``0.9.6`` | ``GCCcore/11.2.0`` -``1.0.0`` | ``GCCcore/11.2.0`` ``1.11.0`` | ``GCCcore/12.3.0`` ``1.2.1`` | ``GCCcore/11.3.0`` ``1.3.0`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/m/molmod.md b/docs/version-specific/supported-software/m/molmod.md index 2c457a0b81..ed12a02bae 100644 --- a/docs/version-specific/supported-software/m/molmod.md +++ b/docs/version-specific/supported-software/m/molmod.md @@ -4,13 +4,12 @@ search: --- # molmod -MolMod is a Python library with many components that are useful to write molecular modeling programs. +MolMod is a Python library with many compoments that are useful to write molecular modeling programs. *homepage*: version | toolchain --------|---------- -``1.4.8`` | ``foss/2021b`` ``1.4.8`` | ``foss/2022a`` ``1.4.8`` | ``foss/2023a`` ``1.4.8`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/m/morphosamplers.md b/docs/version-specific/supported-software/m/morphosamplers.md index 9b708f41f4..fd17837af6 100644 --- a/docs/version-specific/supported-software/m/morphosamplers.md +++ b/docs/version-specific/supported-software/m/morphosamplers.md @@ -13,6 +13,7 @@ version | toolchain ``0.0.10`` | ``gfbf/2023a`` ``0.0.15`` | ``gfbf/2023a`` ``0.0.16`` | ``gfbf/2023a`` +``0.0.16`` | ``gfbf/2024a`` ``0.0.16`` | ``gfbf/2025b`` diff --git a/docs/version-specific/supported-software/m/mosdepth.md b/docs/version-specific/supported-software/m/mosdepth.md index f503b668f4..9a465957b3 100644 --- a/docs/version-specific/supported-software/m/mosdepth.md +++ b/docs/version-specific/supported-software/m/mosdepth.md @@ -10,7 +10,7 @@ Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing version | toolchain --------|---------- -``0.3.3`` | ``GCC/11.2.0`` +``0.3.12`` | ``GCC/13.3.0`` ``0.3.9`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/m/motif.md b/docs/version-specific/supported-software/m/motif.md index 2437c6eae2..4d9163865c 100644 --- a/docs/version-specific/supported-software/m/motif.md +++ b/docs/version-specific/supported-software/m/motif.md @@ -10,7 +10,6 @@ Motif refers to both a graphical user interface (GUI) specification and the widg version | toolchain --------|---------- -``2.3.8`` | ``GCCcore/11.2.0`` ``2.3.8`` | ``GCCcore/11.3.0`` ``2.3.8`` | ``GCCcore/12.2.0`` ``2.3.8`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/mpmath.md b/docs/version-specific/supported-software/m/mpmath.md index c59058706a..d6d96aaf6c 100644 --- a/docs/version-specific/supported-software/m/mpmath.md +++ b/docs/version-specific/supported-software/m/mpmath.md @@ -10,7 +10,6 @@ mpmath can be used as an arbitrary-precision substitute for Python's float/compl version | toolchain --------|---------- -``1.2.1`` | ``GCCcore/11.2.0`` ``1.2.1`` | ``GCCcore/11.3.0`` ``1.3.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/msprime.md b/docs/version-specific/supported-software/m/msprime.md index ab35596234..579a9ee714 100644 --- a/docs/version-specific/supported-software/m/msprime.md +++ b/docs/version-specific/supported-software/m/msprime.md @@ -10,8 +10,8 @@ msprime is a coalescent simulator and library for processing tree-based genetic version | toolchain --------|---------- -``1.2.0`` | ``foss/2021b`` ``1.2.0`` | ``foss/2022a`` +``1.4.1`` | ``gfbf/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mstore.md b/docs/version-specific/supported-software/m/mstore.md index d2cbded567..cfd63eab05 100644 --- a/docs/version-specific/supported-software/m/mstore.md +++ b/docs/version-specific/supported-software/m/mstore.md @@ -10,7 +10,6 @@ Molecular structure store for testing version | toolchain --------|---------- -``0.2.0`` | ``GCC/11.2.0`` ``0.2.0`` | ``GCC/11.3.0`` ``0.2.0`` | ``GCC/12.2.0`` ``0.2.0`` | ``intel-compilers/2022.1.0`` diff --git a/docs/version-specific/supported-software/m/mujoco-py.md b/docs/version-specific/supported-software/m/mujoco-py.md deleted file mode 100644 index 9438b5e182..0000000000 --- a/docs/version-specific/supported-software/m/mujoco-py.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# mujoco-py - -MuJoCo is a physics engine for detailed, efficient rigid body simulations with contacts. mujoco-py allows using MuJoCo from Python 3. - -*homepage*: - -version | toolchain ---------|---------- -``2.1.2.14`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/m/multicharge.md b/docs/version-specific/supported-software/m/multicharge.md index 55f4275274..ea1e71c328 100644 --- a/docs/version-specific/supported-software/m/multicharge.md +++ b/docs/version-specific/supported-software/m/multicharge.md @@ -20,6 +20,7 @@ version | toolchain ``0.3.1`` | ``gfbf/2024a`` ``0.3.1`` | ``iimkl/2024a`` ``0.4.0`` | ``gfbf/2025b`` +``0.5.0`` | ``gfbf/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/multichoose.md b/docs/version-specific/supported-software/m/multichoose.md index 7ef4c699ad..da7377a732 100644 --- a/docs/version-specific/supported-software/m/multichoose.md +++ b/docs/version-specific/supported-software/m/multichoose.md @@ -10,7 +10,6 @@ generate multiset combinations (n multichoose k). version | toolchain --------|---------- -``1.0.3`` | ``GCCcore/11.2.0`` ``1.0.3`` | ``GCCcore/11.3.0`` ``1.0.3`` | ``GCCcore/12.2.0`` ``1.0.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/m/multiprocess.md b/docs/version-specific/supported-software/m/multiprocess.md index fe259f4768..ce5cb38a8f 100644 --- a/docs/version-specific/supported-software/m/multiprocess.md +++ b/docs/version-specific/supported-software/m/multiprocess.md @@ -14,6 +14,7 @@ version | toolchain ``0.70.15`` | ``gfbf/2023a`` ``0.70.16`` | ``gfbf/2023b`` ``0.70.17`` | ``gfbf/2024a`` +``0.70.18`` | ``gfbf/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/muparserx.md b/docs/version-specific/supported-software/m/muparserx.md index 796c3ac682..622302a3c7 100644 --- a/docs/version-specific/supported-software/m/muparserx.md +++ b/docs/version-specific/supported-software/m/muparserx.md @@ -11,7 +11,6 @@ A C++ Library for Parsing Expressions with Strings, Complex Numbers, Vectors, Ma version | toolchain --------|---------- ``4.0.12`` | ``GCCcore/14.3.0`` -``4.0.8`` | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/m/mycotools.md b/docs/version-specific/supported-software/m/mycotools.md new file mode 100644 index 0000000000..165762427e --- /dev/null +++ b/docs/version-specific/supported-software/m/mycotools.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# mycotools + +Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparative genomics. + +*homepage*: + +version | toolchain +--------|---------- +``1.0.0`` | ``foss/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/n/NAGlib.md b/docs/version-specific/supported-software/n/NAGlib.md deleted file mode 100644 index 4c4a0190c9..0000000000 --- a/docs/version-specific/supported-software/n/NAGlib.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# NAGlib - -The worlds largest collection of robust, documented, tested and maintained numerical algorithms. This is the library from the NAG collection of available software. - -*homepage*: - -version | toolchain ---------|---------- -``30.3`` | ``intel-compilers/2021.4.0`` -``30.D`` | ``intel-compilers/2021.4.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/NASM.md b/docs/version-specific/supported-software/n/NASM.md index 0529fc5d99..c031161c19 100644 --- a/docs/version-specific/supported-software/n/NASM.md +++ b/docs/version-specific/supported-software/n/NASM.md @@ -10,7 +10,6 @@ NASM: General-purpose x86 assembler version | toolchain --------|---------- -``2.15.05`` | ``GCCcore/11.2.0`` ``2.15.05`` | ``GCCcore/11.3.0`` ``2.15.05`` | ``GCCcore/12.2.0`` ``2.16.01`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/n/NBO.md b/docs/version-specific/supported-software/n/NBO.md index f5995371f0..db8a7c9cdf 100644 --- a/docs/version-specific/supported-software/n/NBO.md +++ b/docs/version-specific/supported-software/n/NBO.md @@ -10,8 +10,6 @@ The Natural Bond Orbital (NBO) program is a discovery tool for chemical insights version | versionsuffix | toolchain --------|---------------|---------- -``7.0.10`` | ``-i4`` | ``GCC/11.2.0`` -``7.0.10`` | | ``GCC/11.2.0`` ``7.0.10`` | ``-i4`` | ``gfbf/2022a`` ``7.0.10`` | | ``gfbf/2022a`` ``7.0.10`` | ``-i4`` | ``gfbf/2022b`` diff --git a/docs/version-specific/supported-software/n/NCCL.md b/docs/version-specific/supported-software/n/NCCL.md index 8bd6b48162..9bb883d51c 100644 --- a/docs/version-specific/supported-software/n/NCCL.md +++ b/docs/version-specific/supported-software/n/NCCL.md @@ -10,8 +10,6 @@ The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and mul version | versionsuffix | toolchain --------|---------------|---------- -``2.10.3`` | ``-CUDA-11.4.1`` | ``GCCcore/11.2.0`` -``2.10.3`` | ``-CUDA-11.5.2`` | ``GCCcore/11.2.0`` ``2.12.12`` | ``-CUDA-11.7.0`` | ``GCCcore/11.3.0`` ``2.16.2`` | ``-CUDA-11.7.0`` | ``GCCcore/12.2.0`` ``2.16.2`` | ``-CUDA-12.0.0`` | ``GCCcore/12.2.0`` @@ -21,6 +19,7 @@ version | versionsuffix | toolchain ``2.22.3`` | ``-CUDA-12.6.0`` | ``GCCcore/13.3.0`` ``2.26.2`` | ``-CUDA-12.6.0`` | ``GCCcore/13.3.0`` ``2.26.6`` | ``-CUDA-12.8.0`` | ``GCCcore/14.2.0`` +``2.27.5`` | ``-CUDA-12.6.0`` | ``GCCcore/13.3.0`` ``2.27.7`` | ``-CUDA-12.8.0`` | ``GCCcore/14.2.0`` ``2.27.7`` | ``-CUDA-12.9.1`` | ``GCCcore/14.3.0`` ``2.9.9`` | ``-CUDA-11.3.1`` | ``system`` diff --git a/docs/version-specific/supported-software/n/NCIPLOT.md b/docs/version-specific/supported-software/n/NCIPLOT.md index ad5578a51f..098e5c5a55 100644 --- a/docs/version-specific/supported-software/n/NCIPLOT.md +++ b/docs/version-specific/supported-software/n/NCIPLOT.md @@ -10,7 +10,6 @@ NCIPLOT is a program for revealing non covalent interactions based on the reduc version | toolchain --------|---------- -``4.0-20200624`` | ``GCC/11.2.0`` ``4.2-20221021`` | ``intel-compilers/2022.1.0`` diff --git a/docs/version-specific/supported-software/n/NCO.md b/docs/version-specific/supported-software/n/NCO.md index c0be4bcadb..35233597b1 100644 --- a/docs/version-specific/supported-software/n/NCO.md +++ b/docs/version-specific/supported-software/n/NCO.md @@ -10,13 +10,12 @@ The NCO toolkit manipulates and analyzes data stored in netCDF-accessible format version | toolchain --------|---------- -``5.0.3`` | ``foss/2021b`` -``5.0.3`` | ``intel/2021b`` ``5.1.0`` | ``foss/2022a`` ``5.1.3`` | ``foss/2022a`` ``5.1.9`` | ``foss/2023a`` ``5.1.9`` | ``intel/2022a`` ``5.2.9`` | ``foss/2024a`` +``5.3.6`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NEURON.md b/docs/version-specific/supported-software/n/NEURON.md index 1a6e043b76..76789d3181 100644 --- a/docs/version-specific/supported-software/n/NEURON.md +++ b/docs/version-specific/supported-software/n/NEURON.md @@ -10,7 +10,6 @@ Empirically-based simulations of neurons and networks of neurons. version | toolchain --------|---------- -``7.8.2`` | ``foss/2021b`` ``8.2.6`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/n/NFFT.md b/docs/version-specific/supported-software/n/NFFT.md index 7aa1a0e17d..f3b9747c82 100644 --- a/docs/version-specific/supported-software/n/NFFT.md +++ b/docs/version-specific/supported-software/n/NFFT.md @@ -10,7 +10,6 @@ The NFFT (nonequispaced fast Fourier transform or nonuniform fast Fourier transf version | toolchain --------|---------- -``3.5.2`` | ``foss/2021b`` ``3.5.3`` | ``foss/2022a`` ``3.5.3`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/n/NGS.md b/docs/version-specific/supported-software/n/NGS.md index d072b4079f..0860587f6e 100644 --- a/docs/version-specific/supported-software/n/NGS.md +++ b/docs/version-specific/supported-software/n/NGS.md @@ -10,8 +10,8 @@ NGS is a new, domain-specific API for accessing reads, alignments and pileups pr version | versionsuffix | toolchain --------|---------------|---------- -``2.11.2`` | | ``GCCcore/11.2.0`` ``3.0.1`` | ``-Java-11`` | ``GCCcore/12.3.0`` +``3.0.1`` | ``-Java-17`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NGSpeciesID.md b/docs/version-specific/supported-software/n/NGSpeciesID.md index 375dc735ca..c5c07a129d 100644 --- a/docs/version-specific/supported-software/n/NGSpeciesID.md +++ b/docs/version-specific/supported-software/n/NGSpeciesID.md @@ -10,7 +10,6 @@ NGSpeciesID is a tool for clustering and consensus forming of targeted ONT reads version | toolchain --------|---------- -``0.1.2.1`` | ``foss/2021b`` ``0.3.0`` | ``foss/2022b`` ``0.3.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/n/NLTK.md b/docs/version-specific/supported-software/n/NLTK.md index 57f1aa07a3..0882a36e6d 100644 --- a/docs/version-specific/supported-software/n/NLTK.md +++ b/docs/version-specific/supported-software/n/NLTK.md @@ -10,7 +10,6 @@ NLTK is a leading platform for building Python programs to work with human langu version | toolchain --------|---------- -``3.7`` | ``foss/2021b`` ``3.8.1`` | ``foss/2022b`` ``3.8.1`` | ``foss/2023a`` ``3.8.1`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/n/NLopt.md b/docs/version-specific/supported-software/n/NLopt.md index bca0eb4c64..a9f1fc16d2 100644 --- a/docs/version-specific/supported-software/n/NLopt.md +++ b/docs/version-specific/supported-software/n/NLopt.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``2.10.0`` | ``GCCcore/14.2.0`` ``2.10.0`` | ``GCCcore/14.3.0`` -``2.7.0`` | ``GCCcore/11.2.0`` ``2.7.1`` | ``GCCcore/11.3.0`` ``2.7.1`` | ``GCCcore/12.2.0`` ``2.7.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/n/NSPR.md b/docs/version-specific/supported-software/n/NSPR.md index 38f0387f76..b4df074e1e 100644 --- a/docs/version-specific/supported-software/n/NSPR.md +++ b/docs/version-specific/supported-software/n/NSPR.md @@ -10,7 +10,6 @@ Netscape Portable Runtime (NSPR) provides a platform-neutral API for system leve version | toolchain --------|---------- -``4.32`` | ``GCCcore/11.2.0`` ``4.34`` | ``GCCcore/11.3.0`` ``4.35`` | ``GCCcore/12.2.0`` ``4.35`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/n/NSS.md b/docs/version-specific/supported-software/n/NSS.md index c085ac2566..7512c13762 100644 --- a/docs/version-specific/supported-software/n/NSS.md +++ b/docs/version-specific/supported-software/n/NSS.md @@ -13,7 +13,6 @@ version | toolchain ``3.104`` | ``GCCcore/13.3.0`` ``3.113`` | ``GCCcore/14.2.0`` ``3.114`` | ``GCCcore/14.3.0`` -``3.69`` | ``GCCcore/11.2.0`` ``3.79`` | ``GCCcore/11.3.0`` ``3.85`` | ``GCCcore/12.2.0`` ``3.89.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/n/NTL.md b/docs/version-specific/supported-software/n/NTL.md index a0417b5e34..c25f52eebd 100644 --- a/docs/version-specific/supported-software/n/NTL.md +++ b/docs/version-specific/supported-software/n/NTL.md @@ -10,7 +10,6 @@ NTL is a high-performance, portable C++ library providing data structures and al version | toolchain --------|---------- -``11.5.1`` | ``GCC/11.2.0`` ``11.5.1`` | ``GCC/11.3.0`` ``11.5.1`` | ``GCC/12.2.0`` ``11.5.1`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/n/NVHPC.md b/docs/version-specific/supported-software/n/NVHPC.md index 16e7943a9e..a10e8a6665 100644 --- a/docs/version-specific/supported-software/n/NVHPC.md +++ b/docs/version-specific/supported-software/n/NVHPC.md @@ -10,8 +10,6 @@ C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI) version | versionsuffix | toolchain --------|---------------|---------- -``21.11`` | | ``system`` -``21.9`` | | ``system`` ``22.11`` | ``-CUDA-11.7.0`` | ``system`` ``22.7`` | ``-CUDA-11.7.0`` | ``system`` ``22.9`` | ``-CUDA-11.7.0`` | ``system`` diff --git a/docs/version-specific/supported-software/n/NVSHMEM.md b/docs/version-specific/supported-software/n/NVSHMEM.md index 04b982f91a..556a88c01b 100644 --- a/docs/version-specific/supported-software/n/NVSHMEM.md +++ b/docs/version-specific/supported-software/n/NVSHMEM.md @@ -10,7 +10,6 @@ NVSHMEM is a parallel programming interface based on OpenSHMEM that provides eff version | versionsuffix | toolchain --------|---------------|---------- -``2.4.1`` | ``-CUDA-11.4.1`` | ``gompi/2021b`` ``2.5.0`` | ``-CUDA-11.7.0`` | ``gompi/2022a`` ``2.7.0`` | ``-CUDA-11.7.0`` | ``gompi/2022a`` ``2.8.0`` | ``-CUDA-11.7.0`` | ``gompi/2022a`` diff --git a/docs/version-specific/supported-software/n/NanoFilt.md b/docs/version-specific/supported-software/n/NanoFilt.md index 2f568448aa..65caa0dcd8 100644 --- a/docs/version-specific/supported-software/n/NanoFilt.md +++ b/docs/version-specific/supported-software/n/NanoFilt.md @@ -10,9 +10,9 @@ Filtering and trimming of long read sequencing data. version | toolchain --------|---------- -``2.8.0`` | ``foss/2021b`` ``2.8.0`` | ``foss/2023a`` ``2.8.0`` | ``foss/2023b`` +``2.8.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NanoPlot.md b/docs/version-specific/supported-software/n/NanoPlot.md index 64f9bc4f4a..49cd40f55d 100644 --- a/docs/version-specific/supported-software/n/NanoPlot.md +++ b/docs/version-specific/supported-software/n/NanoPlot.md @@ -13,6 +13,7 @@ version | toolchain ``1.41.0`` | ``foss/2022b`` ``1.42.0`` | ``foss/2022a`` ``1.43.0`` | ``foss/2023a`` +``1.43.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/NetLogo.md b/docs/version-specific/supported-software/n/NetLogo.md index a9f855bfd2..199292e3ac 100644 --- a/docs/version-specific/supported-software/n/NetLogo.md +++ b/docs/version-specific/supported-software/n/NetLogo.md @@ -10,7 +10,6 @@ NetLogo is a multi-agent programmable modeling environment. It is used by tens o version | versionsuffix | toolchain --------|---------------|---------- -``6.2.0`` | ``-64`` | ``system`` ``6.2.2`` | ``-64`` | ``system`` ``6.3.0`` | ``-64`` | ``system`` diff --git a/docs/version-specific/supported-software/n/NetPyNE.md b/docs/version-specific/supported-software/n/NetPyNE.md deleted file mode 100644 index 494eb07ad5..0000000000 --- a/docs/version-specific/supported-software/n/NetPyNE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# NetPyNE - -NetPyNE is an open-source Python package to facilitate the development, parallel simulation, analysis, and optimization of biological neuronal networks using the NEURON simulator. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.2.1`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/NextGenMap.md b/docs/version-specific/supported-software/n/NextGenMap.md index 9b1455988a..8040fea4f1 100644 --- a/docs/version-specific/supported-software/n/NextGenMap.md +++ b/docs/version-specific/supported-software/n/NextGenMap.md @@ -10,7 +10,6 @@ NextGenMap is a flexible highly sensitive short read mapping tool that handles version | toolchain --------|---------- -``0.5.5`` | ``GCC/11.2.0`` ``0.5.5`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/n/Nextflow.md b/docs/version-specific/supported-software/n/Nextflow.md index e15380ee26..238a5ce682 100644 --- a/docs/version-specific/supported-software/n/Nextflow.md +++ b/docs/version-specific/supported-software/n/Nextflow.md @@ -10,7 +10,6 @@ Nextflow is a reactive workflow framework and a programming DSL that eases writ version | toolchain --------|---------- -``21.03.0`` | ``system`` ``22.04.0`` | ``system`` ``22.10.0`` | ``system`` ``22.10.1`` | ``system`` diff --git a/docs/version-specific/supported-software/n/NiBabel.md b/docs/version-specific/supported-software/n/NiBabel.md index 1bd586df63..991f282afa 100644 --- a/docs/version-specific/supported-software/n/NiBabel.md +++ b/docs/version-specific/supported-software/n/NiBabel.md @@ -10,12 +10,12 @@ NiBabel provides read/write access to some common medical and neuroimaging file version | toolchain --------|---------- -``3.2.2`` | ``foss/2021b`` ``4.0.2`` | ``foss/2022a`` ``5.2.0`` | ``gfbf/2022b`` ``5.2.0`` | ``gfbf/2023a`` ``5.3.2`` | ``gfbf/2023b`` ``5.3.2`` | ``gfbf/2024a`` +``5.3.3`` | ``gfbf/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/Nim.md b/docs/version-specific/supported-software/n/Nim.md index 5e9c3606b1..a7a5aad756 100644 --- a/docs/version-specific/supported-software/n/Nim.md +++ b/docs/version-specific/supported-software/n/Nim.md @@ -10,8 +10,8 @@ Nim is a systems and applications programming language. version | toolchain --------|---------- -``1.6.6`` | ``GCCcore/11.2.0`` ``2.2.0`` | ``GCCcore/12.3.0`` +``2.2.6`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/Ninja.md b/docs/version-specific/supported-software/n/Ninja.md index 7cb9808275..eb8be63fe0 100644 --- a/docs/version-specific/supported-software/n/Ninja.md +++ b/docs/version-specific/supported-software/n/Ninja.md @@ -10,7 +10,6 @@ Ninja is a small build system with a focus on speed. version | toolchain --------|---------- -``1.10.2`` | ``GCCcore/11.2.0`` ``1.10.2`` | ``GCCcore/11.3.0`` ``1.11.1`` | ``GCCcore/12.2.0`` ``1.11.1`` | ``GCCcore/12.3.0`` @@ -18,6 +17,7 @@ version | toolchain ``1.12.1`` | ``GCCcore/13.3.0`` ``1.12.1`` | ``GCCcore/14.2.0`` ``1.13.0`` | ``GCCcore/14.3.0`` +``1.13.2`` | ``GCCcore/15.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/Nipype.md b/docs/version-specific/supported-software/n/Nipype.md new file mode 100644 index 0000000000..72dc394421 --- /dev/null +++ b/docs/version-specific/supported-software/n/Nipype.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# Nipype + +Nipype is a Python project that provides a uniform interface to existing neuroimaging software and facilitates interaction between these packages within a single workflow. + +*homepage*: + +version | toolchain +--------|---------- +``1.10.0`` | ``gfbf/2025a`` +``1.9.2`` | ``gfbf/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/n/Nsight-Compute.md b/docs/version-specific/supported-software/n/Nsight-Compute.md index 20621e9393..5c590c6e38 100644 --- a/docs/version-specific/supported-software/n/Nsight-Compute.md +++ b/docs/version-specific/supported-software/n/Nsight-Compute.md @@ -4,13 +4,12 @@ search: --- # Nsight-Compute -NVIDIA® Nsight™ Compute is an interactive kernel profiler for CUDA applications. It provides detailed performance metrics and API debugging via a user interface and command line tool. In addition, its baseline feature allows users to compare results within the tool. Nsight Compute provides a customizable and data-driven user interface and metric collection and can be extended with analysis scripts for post-processing results. +NVIDIA® Nsight™ Compute is an interactive kernel profiler for CUDA applications. It provides detailed performance metrics and API debugging via a user interface and a command line tool. In addition, its baseline feature allows users to compare results within the tool. Nsight Compute provides a customizable and data-driven user interface and fast metric collection, which can be extended with rules-based analysis scripts for post-processing results. The rules-based guided analysis helps isolate and fix memory throughput, compute, and occupancy inefficiencies in the target application. *homepage*: version | toolchain --------|---------- -``2020.3.0`` | ``system`` ``2021.2.0`` | ``system`` ``2025.2.0`` | ``system`` ``2025.3.1`` | ``system`` diff --git a/docs/version-specific/supported-software/n/Nsight-Systems.md b/docs/version-specific/supported-software/n/Nsight-Systems.md index 64efe70e1a..76eb008606 100644 --- a/docs/version-specific/supported-software/n/Nsight-Systems.md +++ b/docs/version-specific/supported-software/n/Nsight-Systems.md @@ -6,11 +6,10 @@ search: NVIDIA® Nsight™ Systems is a system-wide performance analysis tool designed to visualize an application’s algorithm, help you select the largest opportunities to optimize, and tune to scale efficiently across any quantity of CPUs and GPUs in your computer; from laptops to DGX servers. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2020.5.1`` | ``system`` ``2025.3.1`` | ``system`` ``2025.4.1`` | ``system`` diff --git a/docs/version-specific/supported-software/n/index.md b/docs/version-specific/supported-software/n/index.md index 125926e0f5..bd761ad81b 100644 --- a/docs/version-specific/supported-software/n/index.md +++ b/docs/version-specific/supported-software/n/index.md @@ -11,9 +11,7 @@ search: * [n2v](n2v.md) * [NAG](NAG.md) * [NAGfor](NAGfor.md) - * [NAGlib](NAGlib.md) * [NAMD](NAMD.md) - * [namedlist](namedlist.md) * [nano](nano.md) * [nanobind](nanobind.md) * [NanoCaller](NanoCaller.md) @@ -23,7 +21,6 @@ search: * [nanoget](nanoget.md) * [NanoLyse](NanoLyse.md) * [nanomath](nanomath.md) - * [nanomax-analysis-utils](nanomax-analysis-utils.md) * [NanoPack](NanoPack.md) * [NanoPlot](NanoPlot.md) * [nanopolish](nanopolish.md) @@ -60,7 +57,6 @@ search: * [Netgen](Netgen.md) * [netket](netket.md) * [NetLogo](NetLogo.md) - * [NetPyNE](NetPyNE.md) * [nettle](nettle.md) * [networkx](networkx.md) * [NEURON](NEURON.md) @@ -86,6 +82,7 @@ search: * [Nim](Nim.md) * [Ninja](Ninja.md) * [ninja-python](ninja-python.md) + * [Nipype](Nipype.md) * [nlohmann_json](nlohmann_json.md) * [NLopt](NLopt.md) * [NLTK](NLTK.md) diff --git a/docs/version-specific/supported-software/n/namedlist.md b/docs/version-specific/supported-software/n/namedlist.md deleted file mode 100644 index ebb7bca802..0000000000 --- a/docs/version-specific/supported-software/n/namedlist.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# namedlist - -A Python object, similar to namedtuple, but for lists. - -*homepage*: - -version | toolchain ---------|---------- -``1.8`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/nanoget.md b/docs/version-specific/supported-software/n/nanoget.md index f97686b857..4843ff8cb4 100644 --- a/docs/version-specific/supported-software/n/nanoget.md +++ b/docs/version-specific/supported-software/n/nanoget.md @@ -14,6 +14,7 @@ version | toolchain ``1.18.1`` | ``foss/2022b`` ``1.19.1`` | ``foss/2022a`` ``1.19.3`` | ``foss/2023a`` +``1.19.4`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/nanomath.md b/docs/version-specific/supported-software/n/nanomath.md index 712bebf338..1fd0765274 100644 --- a/docs/version-specific/supported-software/n/nanomath.md +++ b/docs/version-specific/supported-software/n/nanomath.md @@ -13,6 +13,7 @@ version | toolchain ``1.3.0`` | ``foss/2022a`` ``1.3.0`` | ``foss/2022b`` ``1.4.0`` | ``foss/2023a`` +``1.4.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/nanomax-analysis-utils.md b/docs/version-specific/supported-software/n/nanomax-analysis-utils.md deleted file mode 100644 index 378b92027e..0000000000 --- a/docs/version-specific/supported-software/n/nanomax-analysis-utils.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# nanomax-analysis-utils - -A set of tools for handling and analysing data at the NanoMAX beamline. - -*homepage*: - -version | toolchain ---------|---------- -``0.4.4`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/n/napari.md b/docs/version-specific/supported-software/n/napari.md index ea45c5dae8..838394714a 100644 --- a/docs/version-specific/supported-software/n/napari.md +++ b/docs/version-specific/supported-software/n/napari.md @@ -10,7 +10,6 @@ napari is a fast, interactive, multi-dimensional image viewer for Python. It's d version | toolchain --------|---------- -``0.4.15`` | ``foss/2021b`` ``0.4.18`` | ``foss/2022a`` ``0.4.18`` | ``foss/2023a`` ``0.4.19.post1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/n/nauty.md b/docs/version-specific/supported-software/n/nauty.md index ce1100dc58..fd8a01c2f6 100644 --- a/docs/version-specific/supported-software/n/nauty.md +++ b/docs/version-specific/supported-software/n/nauty.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2.8.6`` | ``GCC/11.3.0`` ``2.8.8`` | ``GCC/13.2.0`` +``2.9.3`` | ``GCC/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/ncbi-vdb.md b/docs/version-specific/supported-software/n/ncbi-vdb.md index b2bb189fe2..7f18bc413c 100644 --- a/docs/version-specific/supported-software/n/ncbi-vdb.md +++ b/docs/version-specific/supported-software/n/ncbi-vdb.md @@ -10,8 +10,6 @@ The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for us version | toolchain --------|---------- -``2.11.2`` | ``gompi/2021b`` -``3.0.0`` | ``gompi/2021b`` ``3.0.0`` | ``gompi/2022a`` ``3.0.10`` | ``gompi/2023a`` ``3.0.2`` | ``gompi/2022a`` diff --git a/docs/version-specific/supported-software/n/ncdu.md b/docs/version-specific/supported-software/n/ncdu.md index 09818d077a..e00b7421e7 100644 --- a/docs/version-specific/supported-software/n/ncdu.md +++ b/docs/version-specific/supported-software/n/ncdu.md @@ -10,11 +10,11 @@ Ncdu is a disk usage analyzer with an ncurses interface. It is designed to find version | toolchain --------|---------- -``1.16`` | ``GCC/11.2.0`` ``1.17`` | ``GCC/11.3.0`` ``1.18`` | ``GCC/12.3.0`` ``1.20`` | ``GCC/13.2.0`` ``1.20`` | ``GCC/13.3.0`` +``1.22`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/ncurses.md b/docs/version-specific/supported-software/n/ncurses.md index 9fe9316b08..c577e45920 100644 --- a/docs/version-specific/supported-software/n/ncurses.md +++ b/docs/version-specific/supported-software/n/ncurses.md @@ -11,7 +11,6 @@ The Ncurses (new curses) library is a free software emulation of curses in Syste version | toolchain --------|---------- ``5.9`` | ``system`` -``6.2`` | ``GCCcore/11.2.0`` ``6.2`` | ``system`` ``6.3`` | ``GCCcore/11.3.0`` ``6.3`` | ``GCCcore/12.1.0`` diff --git a/docs/version-specific/supported-software/n/ncview.md b/docs/version-specific/supported-software/n/ncview.md index da522518ee..fa4501ca49 100644 --- a/docs/version-specific/supported-software/n/ncview.md +++ b/docs/version-specific/supported-software/n/ncview.md @@ -12,7 +12,7 @@ version | toolchain --------|---------- ``2.1.11`` | ``gompi/2024a`` ``2.1.11`` | ``gompi/2025a`` -``2.1.8`` | ``gompi/2021b`` +``2.1.11`` | ``gompi/2025b`` ``2.1.8`` | ``gompi/2022a`` ``2.1.8`` | ``gompi/2023a`` diff --git a/docs/version-specific/supported-software/n/netCDF-C++4.md b/docs/version-specific/supported-software/n/netCDF-C++4.md index b43c8e0339..5785fd9821 100644 --- a/docs/version-specific/supported-software/n/netCDF-C++4.md +++ b/docs/version-specific/supported-software/n/netCDF-C++4.md @@ -10,16 +10,16 @@ NetCDF (network Common Data Form) is a set of software libraries and machine-in version | toolchain --------|---------- -``4.3.1`` | ``gompi/2021b`` ``4.3.1`` | ``gompi/2022a`` ``4.3.1`` | ``gompi/2023a`` ``4.3.1`` | ``gompi/2023b`` ``4.3.1`` | ``gompi/2024a`` -``4.3.1`` | ``iimpi/2021b`` +``4.3.1`` | ``gompi/2025a`` ``4.3.1`` | ``iimpi/2022a`` ``4.3.1`` | ``iimpi/2023b`` ``4.3.1`` | ``iimpi/2024a`` ``4.3.1`` | ``iimpi/2025b`` +``4.3.1`` | ``lompi/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/netCDF-Fortran.md b/docs/version-specific/supported-software/n/netCDF-Fortran.md index d76848a553..9e28289378 100644 --- a/docs/version-specific/supported-software/n/netCDF-Fortran.md +++ b/docs/version-specific/supported-software/n/netCDF-Fortran.md @@ -10,8 +10,6 @@ NetCDF (network Common Data Form) is a set of software libraries and machine-in version | toolchain --------|---------- -``4.5.3`` | ``gompi/2021b`` -``4.5.3`` | ``iimpi/2021b`` ``4.6.0`` | ``gompi/2022a`` ``4.6.0`` | ``gompi/2022b`` ``4.6.0`` | ``iimpi/2022a`` @@ -25,6 +23,7 @@ version | toolchain ``4.6.2`` | ``gompi/2025b`` ``4.6.2`` | ``iimpi/2025a`` ``4.6.2`` | ``iimpi/2025b`` +``4.6.2`` | ``lompi/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/netCDF.md b/docs/version-specific/supported-software/n/netCDF.md index e714cbd9be..ac37910c8b 100644 --- a/docs/version-specific/supported-software/n/netCDF.md +++ b/docs/version-specific/supported-software/n/netCDF.md @@ -10,8 +10,6 @@ NetCDF (network Common Data Form) is a set of software libraries and machine-in version | toolchain --------|---------- -``4.8.1`` | ``gompi/2021b`` -``4.8.1`` | ``iimpi/2021b`` ``4.9.0`` | ``gompi/2022a`` ``4.9.0`` | ``gompi/2022b`` ``4.9.0`` | ``iimpi/2022a`` @@ -26,6 +24,7 @@ version | toolchain ``4.9.3`` | ``gompi/2025b`` ``4.9.3`` | ``iimpi/2025a`` ``4.9.3`` | ``iimpi/2025b`` +``4.9.3`` | ``lompi/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/netcdf4-python.md b/docs/version-specific/supported-software/n/netcdf4-python.md index fc9c70e50d..7866d02ade 100644 --- a/docs/version-specific/supported-software/n/netcdf4-python.md +++ b/docs/version-specific/supported-software/n/netcdf4-python.md @@ -10,8 +10,6 @@ Python/numpy interface to netCDF. version | toolchain --------|---------- -``1.5.7`` | ``foss/2021b`` -``1.5.7`` | ``intel/2021b`` ``1.6.1`` | ``foss/2022a`` ``1.6.1`` | ``intel/2022a`` ``1.6.3`` | ``foss/2022b`` @@ -19,6 +17,7 @@ version | toolchain ``1.6.5`` | ``foss/2023b`` ``1.7.1.post2`` | ``foss/2023b`` ``1.7.1.post2`` | ``foss/2024a`` +``1.7.1.post2`` | ``intel/2023b`` ``1.7.2`` | ``foss/2025a`` ``1.7.2`` | ``foss/2025b`` diff --git a/docs/version-specific/supported-software/n/nettle.md b/docs/version-specific/supported-software/n/nettle.md index 40296c2735..61812ecdf8 100644 --- a/docs/version-specific/supported-software/n/nettle.md +++ b/docs/version-specific/supported-software/n/nettle.md @@ -13,7 +13,6 @@ version | toolchain ``3.10`` | ``GCCcore/13.3.0`` ``3.10.1`` | ``GCCcore/14.2.0`` ``3.10.2`` | ``GCCcore/14.3.0`` -``3.7.3`` | ``GCCcore/11.2.0`` ``3.8`` | ``GCCcore/11.3.0`` ``3.8.1`` | ``GCCcore/12.2.0`` ``3.9.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/n/networkx.md b/docs/version-specific/supported-software/n/networkx.md index 85350384b3..ce6262fcca 100644 --- a/docs/version-specific/supported-software/n/networkx.md +++ b/docs/version-specific/supported-software/n/networkx.md @@ -10,8 +10,6 @@ NetworkX is a Python package for the creation, manipulation, and study of the st version | toolchain --------|---------- -``2.6.3`` | ``foss/2021b`` -``2.6.3`` | ``intel/2021b`` ``2.8.4`` | ``foss/2022a`` ``2.8.4`` | ``intel/2022a`` ``2.8.8`` | ``gfbf/2022b`` diff --git a/docs/version-specific/supported-software/n/nghttp2.md b/docs/version-specific/supported-software/n/nghttp2.md index 9bcaf51cae..75200047f0 100644 --- a/docs/version-specific/supported-software/n/nghttp2.md +++ b/docs/version-specific/supported-software/n/nghttp2.md @@ -10,7 +10,6 @@ This is an implementation of the Hypertext Transfer Protocol version 2 in C. Th version | toolchain --------|---------- -``1.48.0`` | ``GCC/11.2.0`` ``1.48.0`` | ``GCC/11.3.0`` ``1.58.0`` | ``GCC/12.3.0`` ``1.62.0`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/n/nghttp3.md b/docs/version-specific/supported-software/n/nghttp3.md index 8c148e7731..7eaf3f8d2f 100644 --- a/docs/version-specific/supported-software/n/nghttp3.md +++ b/docs/version-specific/supported-software/n/nghttp3.md @@ -10,7 +10,6 @@ nghttp3 is an implementation of RFC 9114 HTTP/3 mapping over QUIC and RFC 9204 Q version | toolchain --------|---------- -``0.6.0`` | ``GCCcore/11.2.0`` ``0.6.0`` | ``GCCcore/11.3.0`` ``1.13.1`` | ``GCCcore/14.2.0`` ``1.13.1`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/n/ngtcp2.md b/docs/version-specific/supported-software/n/ngtcp2.md index 6b766cce7e..70aee82795 100644 --- a/docs/version-specific/supported-software/n/ngtcp2.md +++ b/docs/version-specific/supported-software/n/ngtcp2.md @@ -10,7 +10,6 @@ search: version | toolchain --------|---------- -``0.7.0`` | ``GCC/11.2.0`` ``0.7.0`` | ``GCC/11.3.0`` ``1.18.0`` | ``GCCcore/14.2.0`` ``1.18.0`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/n/nlohmann_json.md b/docs/version-specific/supported-software/n/nlohmann_json.md index db82ef6788..f4e8c1a389 100644 --- a/docs/version-specific/supported-software/n/nlohmann_json.md +++ b/docs/version-specific/supported-software/n/nlohmann_json.md @@ -10,7 +10,6 @@ JSON for Modern C++ version | toolchain --------|---------- -``3.10.4`` | ``GCCcore/11.2.0`` ``3.10.5`` | ``GCCcore/11.3.0`` ``3.11.2`` | ``GCCcore/12.2.0`` ``3.11.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/n/nodejs.md b/docs/version-specific/supported-software/n/nodejs.md index f621642c64..2a741b808d 100644 --- a/docs/version-specific/supported-software/n/nodejs.md +++ b/docs/version-specific/supported-software/n/nodejs.md @@ -10,7 +10,6 @@ Node.js is a platform built on Chrome's JavaScript runtime for easily building version | toolchain --------|---------- -``14.17.6`` | ``GCCcore/11.2.0`` ``16.15.1`` | ``GCCcore/11.3.0`` ``18.12.1`` | ``GCCcore/12.2.0`` ``18.17.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/n/nsync.md b/docs/version-specific/supported-software/n/nsync.md index 5f182707a1..ca080c3f1d 100644 --- a/docs/version-specific/supported-software/n/nsync.md +++ b/docs/version-specific/supported-software/n/nsync.md @@ -10,7 +10,6 @@ nsync is a C library that exports various synchronization primitives, such as mu version | toolchain --------|---------- -``1.24.0`` | ``GCCcore/11.2.0`` ``1.25.0`` | ``GCCcore/11.3.0`` ``1.26.0`` | ``GCCcore/12.2.0`` ``1.26.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/n/ntCard.md b/docs/version-specific/supported-software/n/ntCard.md index 38536dd976..22434e249e 100644 --- a/docs/version-specific/supported-software/n/ntCard.md +++ b/docs/version-specific/supported-software/n/ntCard.md @@ -10,7 +10,6 @@ ntCard is a streaming algorithm for estimating the frequencies of k-mers in geno version | toolchain --------|---------- -``1.2.1`` | ``GCC/11.2.0`` ``1.2.2`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/n/numactl.md b/docs/version-specific/supported-software/n/numactl.md index 21e7b61bbb..519ddcd78c 100644 --- a/docs/version-specific/supported-software/n/numactl.md +++ b/docs/version-specific/supported-software/n/numactl.md @@ -10,7 +10,6 @@ The numactl program allows you to run your application program on specific cpu' version | toolchain --------|---------- -``2.0.14`` | ``GCCcore/11.2.0`` ``2.0.14`` | ``GCCcore/11.3.0`` ``2.0.16`` | ``GCCcore/12.2.0`` ``2.0.16`` | ``GCCcore/12.3.0`` @@ -18,6 +17,7 @@ version | toolchain ``2.0.18`` | ``GCCcore/13.3.0`` ``2.0.19`` | ``GCCcore/14.2.0`` ``2.0.19`` | ``GCCcore/14.3.0`` +``2.0.19`` | ``GCCcore/15.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/n/numba.md b/docs/version-specific/supported-software/n/numba.md index 81dbad76a7..39b04997e1 100644 --- a/docs/version-specific/supported-software/n/numba.md +++ b/docs/version-specific/supported-software/n/numba.md @@ -10,9 +10,6 @@ Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by version | versionsuffix | toolchain --------|---------------|---------- -``0.54.1`` | ``-CUDA-11.4.1`` | ``foss/2021b`` -``0.54.1`` | | ``foss/2021b`` -``0.54.1`` | | ``intel/2021b`` ``0.56.4`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.56.4`` | | ``foss/2022a`` ``0.58.1`` | | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/n/nvtop.md b/docs/version-specific/supported-software/n/nvtop.md index a540940e52..46ccbe8402 100644 --- a/docs/version-specific/supported-software/n/nvtop.md +++ b/docs/version-specific/supported-software/n/nvtop.md @@ -17,6 +17,7 @@ version | toolchain ``3.2.0`` | ``GCCcore/13.3.0`` ``3.2.0`` | ``GCCcore/14.2.0`` ``3.2.0`` | ``GCCcore/14.3.0`` +``3.3.2`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OGDF.md b/docs/version-specific/supported-software/o/OGDF.md deleted file mode 100644 index 9fc3f292f3..0000000000 --- a/docs/version-specific/supported-software/o/OGDF.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OGDF - -OGDF is a self-contained C++ library for graph algorithms, in particular for (but not restricted to) automatic graph drawing. It offers sophisticated algorithms and data structures to use within your own applications or scientific projects. - -*homepage*: - -version | toolchain ---------|---------- -``dogwood-202202`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OPARI2.md b/docs/version-specific/supported-software/o/OPARI2.md index 4594b5cac0..43d7c02fc5 100644 --- a/docs/version-specific/supported-software/o/OPARI2.md +++ b/docs/version-specific/supported-software/o/OPARI2.md @@ -10,7 +10,6 @@ OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-sour version | toolchain --------|---------- -``2.0.7`` | ``GCCcore/11.2.0`` ``2.0.7`` | ``GCCcore/11.3.0`` ``2.0.7`` | ``GCCcore/12.2.0`` ``2.0.7`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/o/ORCA.md b/docs/version-specific/supported-software/o/ORCA.md index ce0fe9b576..61ccc8cedc 100644 --- a/docs/version-specific/supported-software/o/ORCA.md +++ b/docs/version-specific/supported-software/o/ORCA.md @@ -10,9 +10,6 @@ ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum c version | versionsuffix | toolchain --------|---------------|---------- -``5.0.2`` | ``-static`` | ``gompi/2021b`` -``5.0.2`` | | ``gompi/2021b`` -``5.0.3`` | | ``gompi/2021b`` ``5.0.4`` | | ``gompi/2022a`` ``5.0.4`` | | ``gompi/2023a`` ``6.0.0`` | ``-avx2`` | ``foss/2023b`` @@ -24,7 +21,7 @@ version | versionsuffix | toolchain ``6.0.1`` | | ``gompi/2023b`` ``6.1.0`` | ``-avx2`` | ``gompi/2023b`` ``6.1.0`` | | ``gompi/2023b`` -``6.1.1`` | ``-avx2`` | ``gompi/2024a`` +``6.1.1`` | ``-avx2`` | ``gompi/2023b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OSU-Micro-Benchmarks.md b/docs/version-specific/supported-software/o/OSU-Micro-Benchmarks.md index a249137ffa..dfda8d89d9 100644 --- a/docs/version-specific/supported-software/o/OSU-Micro-Benchmarks.md +++ b/docs/version-specific/supported-software/o/OSU-Micro-Benchmarks.md @@ -10,10 +10,6 @@ OSU Micro-Benchmarks version | versionsuffix | toolchain --------|---------------|---------- -``5.7.1`` | | ``gompi/2021b`` -``5.8`` | | ``iimpi/2021b`` -``5.9`` | ``-CUDA-11.4.1`` | ``gompi/2021b`` -``5.9`` | ``-ROCm-4.5.0`` | ``gompi/2021b`` ``5.9`` | | ``gompi/2022.05`` ``5.9`` | ``-CUDA-11.7.0`` | ``gompi/2022a`` ``5.9`` | | ``gompi/2022a`` diff --git a/docs/version-specific/supported-software/o/OTF2.md b/docs/version-specific/supported-software/o/OTF2.md index dd774c58cc..8c1336142d 100644 --- a/docs/version-specific/supported-software/o/OTF2.md +++ b/docs/version-specific/supported-software/o/OTF2.md @@ -11,7 +11,6 @@ The Open Trace Format 2 is a highly scalable, memory efficient event trace data version | toolchain --------|---------- ``3.0`` | ``GCCcore/11.3.0`` -``3.0.2`` | ``GCCcore/11.2.0`` ``3.0.2`` | ``GCCcore/11.3.0`` ``3.0.3`` | ``GCCcore/12.2.0`` ``3.0.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/o/Octave.md b/docs/version-specific/supported-software/o/Octave.md index b508ece075..99252a6632 100644 --- a/docs/version-specific/supported-software/o/Octave.md +++ b/docs/version-specific/supported-software/o/Octave.md @@ -12,7 +12,7 @@ version | toolchain --------|---------- ``10.1.0`` | ``foss/2023a`` ``10.3.0`` | ``foss/2025a`` -``7.1.0`` | ``foss/2021b`` +``11.1.0`` | ``foss/2025b`` ``9.2.0`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/o/OpenAI-Gym.md b/docs/version-specific/supported-software/o/OpenAI-Gym.md index 4df8f99159..0ceba40b87 100644 --- a/docs/version-specific/supported-software/o/OpenAI-Gym.md +++ b/docs/version-specific/supported-software/o/OpenAI-Gym.md @@ -10,7 +10,6 @@ A toolkit for developing and comparing reinforcement learning algorithms. version | toolchain --------|---------- -``0.21.0`` | ``foss/2021b`` ``0.26.2`` | ``foss/2022a`` ``0.26.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/o/OpenBLAS.md b/docs/version-specific/supported-software/o/OpenBLAS.md index b59affe9ad..3f2e729eca 100644 --- a/docs/version-specific/supported-software/o/OpenBLAS.md +++ b/docs/version-specific/supported-software/o/OpenBLAS.md @@ -4,15 +4,12 @@ search: --- # OpenBLAS -OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. +OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. This build supports 64bit integers in Fortran (integer*8) *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.3.17`` | | ``GCC/11.2.0`` -``0.3.18`` | | ``GCC/11.2.0`` -``0.3.20`` | | ``GCC/11.2.0`` ``0.3.20`` | ``-int8`` | ``GCC/11.3.0`` ``0.3.20`` | | ``GCC/11.3.0`` ``0.3.20`` | | ``NVHPC/22.7-CUDA-11.7.0`` @@ -27,6 +24,8 @@ version | versionsuffix | toolchain ``0.3.30`` | | ``GCC/14.3.0`` ``0.3.30`` | | ``llvm-compilers/20.1.8`` ``0.3.31`` | | ``GCC/15.2.0`` +``0.3.32`` | | ``GCC/15.2.0`` +``0.3.32`` | | ``llvm-compilers/21.1.8`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenBabel.md b/docs/version-specific/supported-software/o/OpenBabel.md index 89892ea574..f263cfed86 100644 --- a/docs/version-specific/supported-software/o/OpenBabel.md +++ b/docs/version-specific/supported-software/o/OpenBabel.md @@ -15,6 +15,7 @@ version | toolchain ``3.1.1`` | ``gompi/2023b`` ``3.1.1`` | ``gompi/2024a`` ``3.1.1`` | ``gompi/2025a`` +``3.1.1`` | ``gompi/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenCV.md b/docs/version-specific/supported-software/o/OpenCV.md index 561da53d6a..6db7a06d9c 100644 --- a/docs/version-specific/supported-software/o/OpenCV.md +++ b/docs/version-specific/supported-software/o/OpenCV.md @@ -16,8 +16,6 @@ version | versionsuffix | toolchain ``4.12.0`` | ``-contrib`` | ``foss/2025a`` ``4.12.0`` | ``-CUDA-12.9.1-contrib`` | ``foss/2025b`` ``4.12.0`` | ``-contrib`` | ``foss/2025b`` -``4.5.5`` | ``-CUDA-11.4.1-contrib`` | ``foss/2021b`` -``4.5.5`` | ``-contrib`` | ``foss/2021b`` ``4.6.0`` | ``-CUDA-11.7.0-contrib`` | ``foss/2022a`` ``4.6.0`` | ``-contrib`` | ``foss/2022a`` ``4.8.0`` | ``-contrib`` | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/o/OpenCensus-python.md b/docs/version-specific/supported-software/o/OpenCensus-python.md deleted file mode 100644 index 8f3bf0d245..0000000000 --- a/docs/version-specific/supported-software/o/OpenCensus-python.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# OpenCensus-python - -OpenCensus for Python. OpenCensus provides a framework to measure a server's resource usage and collect performance stats. This repository contains Python related utilities and supporting software needed by OpenCensus. - -*homepage*: - -version | toolchain ---------|---------- -``0.8.0`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/OpenEXR.md b/docs/version-specific/supported-software/o/OpenEXR.md index c9389966d9..00a93f1b47 100644 --- a/docs/version-specific/supported-software/o/OpenEXR.md +++ b/docs/version-specific/supported-software/o/OpenEXR.md @@ -10,7 +10,6 @@ OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial version | toolchain --------|---------- -``3.1.1`` | ``GCCcore/11.2.0`` ``3.1.5`` | ``GCCcore/11.3.0`` ``3.1.5`` | ``GCCcore/12.2.0`` ``3.1.7`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/o/OpenFAST.md b/docs/version-specific/supported-software/o/OpenFAST.md index 61261c0d2d..053e0478f6 100644 --- a/docs/version-specific/supported-software/o/OpenFAST.md +++ b/docs/version-specific/supported-software/o/OpenFAST.md @@ -10,7 +10,6 @@ OpenFAST is a wind turbine simulation tool which builds on FAST v8. FAST.Farm ex version | toolchain --------|---------- -``3.0.0`` | ``foss/2021b`` ``3.5.2`` | ``foss/2023b`` ``4.0.2`` | ``foss/2024a`` ``4.1.2`` | ``foss/2025a`` diff --git a/docs/version-specific/supported-software/o/OpenFOAM.md b/docs/version-specific/supported-software/o/OpenFOAM.md index 597de3a131..495932c3e7 100644 --- a/docs/version-specific/supported-software/o/OpenFOAM.md +++ b/docs/version-specific/supported-software/o/OpenFOAM.md @@ -25,7 +25,6 @@ version | versionsuffix | toolchain ``7`` | ``-20200508`` | ``foss/2022a`` ``8`` | | ``foss/2023a`` ``9`` | | ``foss/2023a`` -``v2112`` | | ``foss/2021b`` ``v2112`` | | ``foss/2022a`` ``v2112`` | | ``foss/2023a`` ``v2206`` | ``-int64`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/o/OpenJPEG.md b/docs/version-specific/supported-software/o/OpenJPEG.md index 71bfb808d1..3924f089bf 100644 --- a/docs/version-specific/supported-software/o/OpenJPEG.md +++ b/docs/version-specific/supported-software/o/OpenJPEG.md @@ -10,7 +10,6 @@ OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been d version | toolchain --------|---------- -``2.4.0`` | ``GCCcore/11.2.0`` ``2.5.0`` | ``GCCcore/11.3.0`` ``2.5.0`` | ``GCCcore/12.2.0`` ``2.5.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/o/OpenLB.md b/docs/version-specific/supported-software/o/OpenLB.md new file mode 100644 index 0000000000..313eaacf25 --- /dev/null +++ b/docs/version-specific/supported-software/o/OpenLB.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# OpenLB + +The OpenLB project provides a C++ package for the implementation of lattice Boltzmann methods that is general enough to address a vast range of transport problems, e.g. in computational fluid dynamics. + +*homepage*: + +version | toolchain +--------|---------- +``1.8.1`` | ``foss/2023b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/o/OpenMM.md b/docs/version-specific/supported-software/o/OpenMM.md index 04a59bcf4a..0f9504d258 100644 --- a/docs/version-specific/supported-software/o/OpenMM.md +++ b/docs/version-specific/supported-software/o/OpenMM.md @@ -10,8 +10,6 @@ OpenMM is a toolkit for molecular simulation. version | versionsuffix | toolchain --------|---------------|---------- -``7.5.1`` | ``-CUDA-11.4.1-DeepMind-patch`` | ``foss/2021b`` -``7.5.1`` | ``-DeepMind-patch`` | ``foss/2021b`` ``7.7.0`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``7.7.0`` | | ``foss/2022a`` ``8.0.0`` | ``-CUDA-11.7.0`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/o/OpenMPI.md b/docs/version-specific/supported-software/o/OpenMPI.md index 45a5615b04..c51ad6b3d1 100644 --- a/docs/version-specific/supported-software/o/OpenMPI.md +++ b/docs/version-specific/supported-software/o/OpenMPI.md @@ -10,9 +10,6 @@ The Open MPI Project is an open source MPI-3 implementation. version | toolchain --------|---------- -``4.1.1`` | ``GCC/11.2.0`` -``4.1.1`` | ``intel-compilers/2021.4.0`` -``4.1.2`` | ``GCC/11.2.0`` ``4.1.4`` | ``GCC/11.3.0`` ``4.1.4`` | ``GCC/12.2.0`` ``4.1.4`` | ``NVHPC/22.7-CUDA-11.7.0`` @@ -22,6 +19,8 @@ version | toolchain ``4.1.5`` | ``intel-compilers/2023.1.0`` ``4.1.6`` | ``GCC/13.2.0`` ``4.1.6`` | ``intel-compilers/2023.2.1`` +``5.0.10`` | ``GCC/15.2.0`` +``5.0.10`` | ``llvm-compilers/21.1.8`` ``5.0.3`` | ``GCC/13.3.0`` ``5.0.3`` | ``NVHPC/24.9-CUDA-12.6.0`` ``5.0.3`` | ``intel-compilers/2024.2.0`` diff --git a/docs/version-specific/supported-software/o/OpenMolcas.md b/docs/version-specific/supported-software/o/OpenMolcas.md index 71c3179da4..295a2820fb 100644 --- a/docs/version-specific/supported-software/o/OpenMolcas.md +++ b/docs/version-specific/supported-software/o/OpenMolcas.md @@ -18,6 +18,7 @@ version | versionsuffix | toolchain ``24.10`` | | ``intel/2023a`` ``24.10`` | | ``iomkl/2023a`` ``25.06`` | ``-DMRG-no-MPI`` | ``iomkl/2023a`` +``26.02`` | | ``intel/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/OpenPGM.md b/docs/version-specific/supported-software/o/OpenPGM.md index a212bf59ca..6f02a281d0 100644 --- a/docs/version-specific/supported-software/o/OpenPGM.md +++ b/docs/version-specific/supported-software/o/OpenPGM.md @@ -10,7 +10,6 @@ OpenPGM is an open source implementation of the Pragmatic General Multicast (PG version | toolchain --------|---------- -``5.2.122`` | ``GCCcore/11.2.0`` ``5.2.122`` | ``GCCcore/11.3.0`` ``5.2.122`` | ``GCCcore/12.2.0`` ``5.2.122`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/o/OpenSSL.md b/docs/version-specific/supported-software/o/OpenSSL.md index 2eba8bb5e3..f715eef5ec 100644 --- a/docs/version-specific/supported-software/o/OpenSSL.md +++ b/docs/version-specific/supported-software/o/OpenSSL.md @@ -11,7 +11,6 @@ The OpenSSL Project is a collaborative effort to develop a robust, commercial-gr version | toolchain --------|---------- ``1.0`` | ``system`` -``1.1.1k`` | ``GCCcore/11.2.0`` ``1.1.1n`` | ``GCCcore/11.3.0`` ``1.1`` | ``system`` ``3`` | ``system`` diff --git a/docs/version-specific/supported-software/o/OpenSceneGraph.md b/docs/version-specific/supported-software/o/OpenSceneGraph.md index faccde6a69..1ae0a9405e 100644 --- a/docs/version-specific/supported-software/o/OpenSceneGraph.md +++ b/docs/version-specific/supported-software/o/OpenSceneGraph.md @@ -10,7 +10,6 @@ The OpenSceneGraph is an open source high performance 3D graphics toolkit, used version | toolchain --------|---------- -``3.6.5`` | ``foss/2021b`` ``3.6.5`` | ``foss/2022a`` ``3.6.5`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/o/OpenSim.md b/docs/version-specific/supported-software/o/OpenSim.md new file mode 100644 index 0000000000..2f9e83323b --- /dev/null +++ b/docs/version-specific/supported-software/o/OpenSim.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# OpenSim + +OpenSim is software that lets users develop models of musculoskeletal structures and create dynamic simulations of movement + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``4.5.2`` | ``-MATLAB-2024a-r7`` | ``foss/2024a`` +``4.5.2`` | | ``foss/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/o/OpenSlide.md b/docs/version-specific/supported-software/o/OpenSlide.md index 582d474fc5..91cbf21261 100644 --- a/docs/version-specific/supported-software/o/OpenSlide.md +++ b/docs/version-specific/supported-software/o/OpenSlide.md @@ -10,7 +10,6 @@ OpenSlide is a C library that provides a simple interface to read whole-slide im version | versionsuffix | toolchain --------|---------------|---------- -``3.4.1`` | | ``GCCcore/11.2.0`` ``3.4.1`` | ``-largefiles`` | ``GCCcore/11.3.0`` ``3.4.1`` | ``-largefiles`` | ``GCCcore/12.2.0`` ``3.4.1`` | ``-largefiles`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/o/OpenStackClient.md b/docs/version-specific/supported-software/o/OpenStackClient.md index 0423c1374c..382475740e 100644 --- a/docs/version-specific/supported-software/o/OpenStackClient.md +++ b/docs/version-specific/supported-software/o/OpenStackClient.md @@ -10,7 +10,6 @@ OpenStackClient (aka OSC) is a command-line client for OpenStack that brings the version | toolchain --------|---------- -``5.8.0`` | ``GCCcore/11.2.0`` ``6.0.0`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/o/Optuna.md b/docs/version-specific/supported-software/o/Optuna.md index 99c8bd1822..b1f695b686 100644 --- a/docs/version-specific/supported-software/o/Optuna.md +++ b/docs/version-specific/supported-software/o/Optuna.md @@ -10,7 +10,6 @@ Optuna is an automatic hyperparameter optimization software framework, particula version | toolchain --------|---------- -``2.10.0`` | ``foss/2021b`` ``3.1.0`` | ``foss/2022a`` ``3.5.0`` | ``foss/2022b`` ``3.5.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/o/OrfM.md b/docs/version-specific/supported-software/o/OrfM.md index 9c4e9f91f3..32fb2b1394 100644 --- a/docs/version-specific/supported-software/o/OrfM.md +++ b/docs/version-specific/supported-software/o/OrfM.md @@ -11,6 +11,7 @@ A simple and not slow open reading frame (ORF) caller. version | toolchain --------|---------- ``0.7.1`` | ``GCC/12.3.0`` +``1.4.0`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/Osi.md b/docs/version-specific/supported-software/o/Osi.md index 936284d015..7d2ac7e13e 100644 --- a/docs/version-specific/supported-software/o/Osi.md +++ b/docs/version-specific/supported-software/o/Osi.md @@ -13,7 +13,6 @@ version | toolchain ``0.108.11`` | ``GCC/13.3.0`` ``0.108.11`` | ``GCC/14.2.0`` ``0.108.11`` | ``GCC/14.3.0`` -``0.108.7`` | ``GCC/11.2.0`` ``0.108.8`` | ``GCC/12.2.0`` ``0.108.9`` | ``GCC/12.3.0`` ``0.108.9`` | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/o/index.md b/docs/version-specific/supported-software/o/index.md index e24fdf4883..29e49f90fe 100644 --- a/docs/version-specific/supported-software/o/index.md +++ b/docs/version-specific/supported-software/o/index.md @@ -16,10 +16,7 @@ search: * [oceanspy](oceanspy.md) * [Octave](Octave.md) * [octave-kernel](octave-kernel.md) - * [OGDF](OGDF.md) * [OGGM](OGGM.md) - * [olaFlow](olaFlow.md) - * [olego](olego.md) * [ollama](ollama.md) * [ome-types](ome-types.md) * [OmegaFold](OmegaFold.md) @@ -44,7 +41,6 @@ search: * [OpenBLAS](OpenBLAS.md) * [Openbox](Openbox.md) * [openCARP](openCARP.md) - * [OpenCensus-python](OpenCensus-python.md) * [OpenCoarrays](OpenCoarrays.md) * [OpenColorIO](OpenColorIO.md) * [OpenCV](OpenCV.md) @@ -59,6 +55,7 @@ search: * [OpenImageIO](OpenImageIO.md) * [OpenJPEG](OpenJPEG.md) * [openkim-models](openkim-models.md) + * [OpenLB](OpenLB.md) * [OpenMEEG](OpenMEEG.md) * [OpenMM](OpenMM.md) * [OpenMM-Torch](OpenMM-Torch.md) @@ -70,6 +67,7 @@ search: * [openpyxl](openpyxl.md) * [OpenQP](OpenQP.md) * [OpenSceneGraph](OpenSceneGraph.md) + * [OpenSim](OpenSim.md) * [OpenSlide](OpenSlide.md) * [OpenSlide-Java](OpenSlide-Java.md) * [openslide-python](openslide-python.md) diff --git a/docs/version-specific/supported-software/o/olaFlow.md b/docs/version-specific/supported-software/o/olaFlow.md deleted file mode 100644 index 42e067514e..0000000000 --- a/docs/version-specific/supported-software/o/olaFlow.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# olaFlow - -olaFlow CFD Suite is a free and open source project committed to bringing the latest advances for the simulation of wave dynamics to the OpenFOAM® and FOAM-extend communities. - -*homepage*: - -version | toolchain ---------|---------- -``20210820`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/olego.md b/docs/version-specific/supported-software/o/olego.md deleted file mode 100644 index d5021957ed..0000000000 --- a/docs/version-specific/supported-software/o/olego.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# olego - -OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seed-and-extend scheme, and does not rely on a separate external mapper. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.9`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/o/ollama.md b/docs/version-specific/supported-software/o/ollama.md index 96ba294b57..04ed726896 100644 --- a/docs/version-specific/supported-software/o/ollama.md +++ b/docs/version-specific/supported-software/o/ollama.md @@ -14,6 +14,8 @@ version | versionsuffix | toolchain ``0.11.10`` | | ``GCCcore/14.2.0`` ``0.11.10`` | ``-CUDA-12.9.1`` | ``GCCcore/14.3.0`` ``0.11.10`` | | ``GCCcore/14.3.0`` +``0.15.6`` | ``-CUDA-12.8.0`` | ``GCCcore/14.2.0`` +``0.15.6`` | | ``GCCcore/14.2.0`` ``0.5.12`` | ``-CUDA-12.6.0`` | ``GCCcore/13.3.0`` ``0.5.12`` | | ``GCCcore/13.3.0`` ``0.6.0`` | ``-CUDA-12.6.0`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/o/omp.md b/docs/version-specific/supported-software/o/omp.md index 3df59d1b5a..7fb7b0b9be 100644 --- a/docs/version-specific/supported-software/o/omp.md +++ b/docs/version-specific/supported-software/o/omp.md @@ -11,6 +11,7 @@ A parallel programming library. version | toolchain --------|---------- ``1.0.0`` | ``GCC/12.3.0`` +``1.0.0`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/o/ont-fast5-api.md b/docs/version-specific/supported-software/o/ont-fast5-api.md index 415e99d740..ce8e875264 100644 --- a/docs/version-specific/supported-software/o/ont-fast5-api.md +++ b/docs/version-specific/supported-software/o/ont-fast5-api.md @@ -10,7 +10,6 @@ ont_fast5_api is a simple interface to HDF5 files of the Oxford Nanopore .fast5 version | toolchain --------|---------- -``4.0.2`` | ``foss/2021b`` ``4.1.1`` | ``foss/2022a`` ``4.1.1`` | ``foss/2022b`` ``4.1.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/o/openpyxl.md b/docs/version-specific/supported-software/o/openpyxl.md index 1eb0bc3281..d729beecd8 100644 --- a/docs/version-specific/supported-software/o/openpyxl.md +++ b/docs/version-specific/supported-software/o/openpyxl.md @@ -11,7 +11,6 @@ A Python library to read/write Excel 2010 xlsx/xlsm files version | toolchain --------|---------- ``3.0.10`` | ``GCCcore/11.3.0`` -``3.0.9`` | ``GCCcore/11.2.0`` ``3.1.2`` | ``GCCcore/12.2.0`` ``3.1.2`` | ``GCCcore/12.3.0`` ``3.1.2`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/o/openslide-python.md b/docs/version-specific/supported-software/o/openslide-python.md index c8ad980a84..f6e204b895 100644 --- a/docs/version-specific/supported-software/o/openslide-python.md +++ b/docs/version-specific/supported-software/o/openslide-python.md @@ -10,7 +10,6 @@ OpenSlide Python is a Python interface to the OpenSlide library. version | toolchain --------|---------- -``1.1.2`` | ``GCCcore/11.2.0`` ``1.2.0`` | ``GCCcore/11.3.0`` ``1.3.1`` | ``GCCcore/12.2.0`` ``1.3.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/o/optree.md b/docs/version-specific/supported-software/o/optree.md index 27d6db576f..f8fd2b016f 100644 --- a/docs/version-specific/supported-software/o/optree.md +++ b/docs/version-specific/supported-software/o/optree.md @@ -13,6 +13,7 @@ version | toolchain ``0.11.0`` | ``GCCcore/12.3.0`` ``0.13.0`` | ``GCCcore/13.2.0`` ``0.14.1`` | ``GCCcore/13.3.0`` +``0.17.0`` | ``GCCcore/14.2.0`` ``0.18.0`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/p/PAML.md b/docs/version-specific/supported-software/p/PAML.md index 432eac097e..2454287f03 100644 --- a/docs/version-specific/supported-software/p/PAML.md +++ b/docs/version-specific/supported-software/p/PAML.md @@ -11,7 +11,6 @@ PAML is a package of programs for phylogenetic analyses of DNA or protein seque version | toolchain --------|---------- ``4.10.5`` | ``GCCcore/11.3.0`` -``4.9j`` | ``GCCcore/11.2.0`` ``4.9j`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/p/PAPI.md b/docs/version-specific/supported-software/p/PAPI.md index 0476719109..2d90a3a57b 100644 --- a/docs/version-specific/supported-software/p/PAPI.md +++ b/docs/version-specific/supported-software/p/PAPI.md @@ -10,7 +10,6 @@ PAPI provides the tool designer and application engineer with a consistent inte version | versionsuffix | toolchain --------|---------------|---------- -``6.0.0.1`` | | ``GCCcore/11.2.0`` ``7.0.0`` | | ``GCCcore/11.3.0`` ``7.0.1`` | | ``GCCcore/12.2.0`` ``7.0.1`` | | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/PBZIP2.md b/docs/version-specific/supported-software/p/PBZIP2.md index 85527edd12..aa53f98691 100644 --- a/docs/version-specific/supported-software/p/PBZIP2.md +++ b/docs/version-specific/supported-software/p/PBZIP2.md @@ -11,6 +11,7 @@ PBZIP2 is a parallel implementation of the bzip2 block-sorting file compressor version | toolchain --------|---------- ``1.1.13`` | ``GCCcore/12.3.0`` +``1.1.13`` | ``GCCcore/13.3.0`` ``1.1.13`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/p/PCRE.md b/docs/version-specific/supported-software/p/PCRE.md index f767496b7c..0e750f768b 100644 --- a/docs/version-specific/supported-software/p/PCRE.md +++ b/docs/version-specific/supported-software/p/PCRE.md @@ -10,7 +10,6 @@ The PCRE library is a set of functions that implement regular expression patter version | toolchain --------|---------- -``8.45`` | ``GCCcore/11.2.0`` ``8.45`` | ``GCCcore/11.3.0`` ``8.45`` | ``GCCcore/12.2.0`` ``8.45`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/PCRE2.md b/docs/version-specific/supported-software/p/PCRE2.md index e24d52429a..2eee280a39 100644 --- a/docs/version-specific/supported-software/p/PCRE2.md +++ b/docs/version-specific/supported-software/p/PCRE2.md @@ -10,7 +10,6 @@ The PCRE library is a set of functions that implement regular expression pattern version | toolchain --------|---------- -``10.37`` | ``GCCcore/11.2.0`` ``10.40`` | ``GCCcore/11.3.0`` ``10.40`` | ``GCCcore/12.2.0`` ``10.42`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/PDAL.md b/docs/version-specific/supported-software/p/PDAL.md index f39bd382cc..0c34a713c1 100644 --- a/docs/version-specific/supported-software/p/PDAL.md +++ b/docs/version-specific/supported-software/p/PDAL.md @@ -11,6 +11,7 @@ PDAL is Point Data Abstraction Library. It is a C/C++ open source library and ap version | toolchain --------|---------- ``2.8.2`` | ``foss/2023a`` +``2.9.3`` | ``foss/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PDT.md b/docs/version-specific/supported-software/p/PDT.md index 32ab00cec0..77ab8380f4 100644 --- a/docs/version-specific/supported-software/p/PDT.md +++ b/docs/version-specific/supported-software/p/PDT.md @@ -10,7 +10,6 @@ Program Database Toolkit (PDT) is a framework for analyzing source code written version | toolchain --------|---------- -``3.25.1`` | ``GCCcore/11.2.0`` ``3.25.1`` | ``GCCcore/11.3.0`` ``3.25.1`` | ``GCCcore/12.2.0`` ``3.25.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/PEAR.md b/docs/version-specific/supported-software/p/PEAR.md index aba9d41b50..228afd6a76 100644 --- a/docs/version-specific/supported-software/p/PEAR.md +++ b/docs/version-specific/supported-software/p/PEAR.md @@ -10,7 +10,6 @@ PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. version | toolchain --------|---------- -``0.9.11`` | ``GCC/11.2.0`` ``0.9.11`` | ``GCC/11.3.0`` ``0.9.11`` | ``GCC/12.2.0`` ``0.9.11`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/p/PETSc.md b/docs/version-specific/supported-software/p/PETSc.md index 96488ced1d..7304f411d5 100644 --- a/docs/version-specific/supported-software/p/PETSc.md +++ b/docs/version-specific/supported-software/p/PETSc.md @@ -11,7 +11,6 @@ PETSc, pronounced PET-see (the S is silent), is a suite of data structures and r version | toolchain --------|---------- ``3.17.4`` | ``foss/2022a`` -``3.18.4`` | ``intel/2021b`` ``3.19.2`` | ``foss/2022b`` ``3.20.3`` | ``foss/2023a`` ``3.22.5`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/p/PGPLOT.md b/docs/version-specific/supported-software/p/PGPLOT.md index 904682e851..a2975046f5 100644 --- a/docs/version-specific/supported-software/p/PGPLOT.md +++ b/docs/version-specific/supported-software/p/PGPLOT.md @@ -10,7 +10,6 @@ The PGPLOT Graphics Subroutine Library is a Fortran- or C-callable, device-indep version | toolchain --------|---------- -``5.2.2`` | ``GCCcore/11.2.0`` ``5.2.2`` | ``GCCcore/11.3.0`` ``5.2.2`` | ``GCCcore/13.2.0`` ``5.2.2`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/p/PLAMS.md b/docs/version-specific/supported-software/p/PLAMS.md index a38131f951..73b5e42a30 100644 --- a/docs/version-specific/supported-software/p/PLAMS.md +++ b/docs/version-specific/supported-software/p/PLAMS.md @@ -11,6 +11,7 @@ The Python Library for Automating Molecular Simulation (PLAMS) is powerful and f version | toolchain --------|---------- ``1.5.1`` | ``intel/2022a`` +``2025.105`` | ``gfbf/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PLINK.md b/docs/version-specific/supported-software/p/PLINK.md index e78e8f861d..e6e23f7669 100644 --- a/docs/version-specific/supported-software/p/PLINK.md +++ b/docs/version-specific/supported-software/p/PLINK.md @@ -12,8 +12,6 @@ version | toolchain --------|---------- ``1.90-beta-7.4-x86_64`` | ``system`` ``2.0.0-a.6.9`` | ``gfbf/2023b`` -``2.00a2.3`` | ``GCC/11.2.0`` -``2.00a3.1`` | ``GCC/11.2.0`` ``2.00a3.6`` | ``GCC/11.3.0`` ``2.00a3.7`` | ``foss/2022a`` ``2.00a3.7`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/p/PLUMED.md b/docs/version-specific/supported-software/p/PLUMED.md index e0736e46f2..50310e1ccf 100644 --- a/docs/version-specific/supported-software/p/PLUMED.md +++ b/docs/version-specific/supported-software/p/PLUMED.md @@ -10,8 +10,6 @@ PLUMED is an open source library for free energy calculations in molecular syste version | toolchain --------|---------- -``2.7.3`` | ``foss/2021b`` -``2.8.0`` | ``foss/2021b`` ``2.8.1`` | ``foss/2022a`` ``2.9.0`` | ``foss/2022b`` ``2.9.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/PMIx.md b/docs/version-specific/supported-software/p/PMIx.md index 77c5c6305d..85a40ad8a0 100644 --- a/docs/version-specific/supported-software/p/PMIx.md +++ b/docs/version-specific/supported-software/p/PMIx.md @@ -10,7 +10,6 @@ Process Management for Exascale Environments PMI Exascale (PMIx) represents an a version | toolchain --------|---------- -``4.1.0`` | ``GCCcore/11.2.0`` ``4.1.2`` | ``GCCcore/11.3.0`` ``4.2.2`` | ``GCCcore/12.2.0`` ``4.2.4`` | ``GCCcore/12.3.0`` @@ -19,6 +18,7 @@ version | toolchain ``5.0.6`` | ``GCCcore/14.2.0`` ``5.0.8`` | ``GCCcore/14.3.0`` ``6.0.0`` | ``GCCcore/14.3.0`` +``6.1.0`` | ``GCCcore/15.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PPanGGOLiN.md b/docs/version-specific/supported-software/p/PPanGGOLiN.md deleted file mode 100644 index dbe318c3a6..0000000000 --- a/docs/version-specific/supported-software/p/PPanGGOLiN.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PPanGGOLiN - -PPanGGOLiN is a software suite used to create and manipulate prokaryotic pangenomes from a set of either genomic DNA sequences or provided genome annotations. It is designed to scale up to tens of thousands of genomes. It has the specificity to partition the pangenome using a statistical approach rather than using fixed thresholds which gives it the ability to work with low-quality data such as Metagenomic Assembled Genomes (MAGs) or Single-cell Amplified Genomes (SAGs) thus taking advantage of large scale environmental studies and letting users study the pangenome of uncultivable species. - -*homepage*: - -version | toolchain ---------|---------- -``1.1.136`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PRANK.md b/docs/version-specific/supported-software/p/PRANK.md index 7940b2de23..883b8219a8 100644 --- a/docs/version-specific/supported-software/p/PRANK.md +++ b/docs/version-specific/supported-software/p/PRANK.md @@ -10,9 +10,10 @@ PRANK is a probabilistic multiple alignment program for DNA, codon and amino-ac version | toolchain --------|---------- -``170427`` | ``GCC/11.2.0`` ``170427`` | ``GCC/11.3.0`` ``170427`` | ``GCC/12.3.0`` +``251117`` | ``GCC/13.3.0`` +``251117`` | ``GCC/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PREQUAL.md b/docs/version-specific/supported-software/p/PREQUAL.md deleted file mode 100644 index 7e60e62706..0000000000 --- a/docs/version-specific/supported-software/p/PREQUAL.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PREQUAL - -A program to identify and mask regions with non-homologous adjacent characters in FASTA files. - -*homepage*: - -version | toolchain ---------|---------- -``1.02`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PRINSEQ.md b/docs/version-specific/supported-software/p/PRINSEQ.md deleted file mode 100644 index 72534e8c1a..0000000000 --- a/docs/version-specific/supported-software/p/PRINSEQ.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PRINSEQ - -A bioinformatics tool to PRe-process and show INformation of SEQuence data. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.20.4`` | ``-Perl-5.34.0`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PROJ.md b/docs/version-specific/supported-software/p/PROJ.md index 795fbc3d59..c59515e3a6 100644 --- a/docs/version-specific/supported-software/p/PROJ.md +++ b/docs/version-specific/supported-software/p/PROJ.md @@ -10,7 +10,6 @@ Program proj is a standard Unix filter function which converts geographic longit version | toolchain --------|---------- -``8.1.0`` | ``GCCcore/11.2.0`` ``9.0.0`` | ``GCCcore/11.3.0`` ``9.1.1`` | ``GCCcore/12.2.0`` ``9.2.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/PRRTE.md b/docs/version-specific/supported-software/p/PRRTE.md index c3403df9ff..97a9f8f17b 100644 --- a/docs/version-specific/supported-software/p/PRRTE.md +++ b/docs/version-specific/supported-software/p/PRRTE.md @@ -14,6 +14,7 @@ version | toolchain ``3.0.5`` | ``GCCcore/13.3.0`` ``3.0.8`` | ``GCCcore/14.2.0`` ``4.0.0`` | ``GCCcore/14.3.0`` +``4.1.0`` | ``GCCcore/15.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PSI4.md b/docs/version-specific/supported-software/p/PSI4.md index 0d40cf63e4..fd3bf9e864 100644 --- a/docs/version-specific/supported-software/p/PSI4.md +++ b/docs/version-specific/supported-software/p/PSI4.md @@ -10,7 +10,6 @@ PSI4 is an open-source suite of ab initio quantum chemistry programs designed fo version | toolchain --------|---------- -``1.7`` | ``foss/2021b`` ``1.9.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/PSM2.md b/docs/version-specific/supported-software/p/PSM2.md index 95b1c502d5..734e4467fe 100644 --- a/docs/version-specific/supported-software/p/PSM2.md +++ b/docs/version-specific/supported-software/p/PSM2.md @@ -10,7 +10,6 @@ Low-level user-space communications interface for the Intel(R) OPA family of pro version | toolchain --------|---------- -``12.0.1`` | ``GCCcore/11.2.0`` ``12.0.1`` | ``GCCcore/11.3.0`` ``12.0.1`` | ``GCCcore/12.2.0`` ``12.0.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/PSolver.md b/docs/version-specific/supported-software/p/PSolver.md deleted file mode 100644 index 4016496d73..0000000000 --- a/docs/version-specific/supported-software/p/PSolver.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PSolver - -Interpolating scaling function Poisson Solver Library - -*homepage*: - -version | toolchain ---------|---------- -``1.8.3`` | ``foss/2021b`` -``1.8.3`` | ``intel/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/Palantir.md b/docs/version-specific/supported-software/p/Palantir.md index 009bfb9286..2b8e15310b 100644 --- a/docs/version-specific/supported-software/p/Palantir.md +++ b/docs/version-specific/supported-software/p/Palantir.md @@ -11,6 +11,7 @@ Palantir is an algorithm to align cells along differentiation trajectories. Pala version | toolchain --------|---------- ``1.4.1`` | ``foss/2023a`` +``1.4.1`` | ``foss/2024a`` ``1.4.1`` | ``foss/2025a`` diff --git a/docs/version-specific/supported-software/p/Pango.md b/docs/version-specific/supported-software/p/Pango.md index dd6eb22596..0551408db8 100644 --- a/docs/version-specific/supported-software/p/Pango.md +++ b/docs/version-specific/supported-software/p/Pango.md @@ -10,7 +10,6 @@ Pango is a library for laying out and rendering of text, with an emphasis on int version | toolchain --------|---------- -``1.48.8`` | ``GCCcore/11.2.0`` ``1.50.12`` | ``GCCcore/12.2.0`` ``1.50.14`` | ``GCCcore/12.3.0`` ``1.50.7`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/p/ParMETIS.md b/docs/version-specific/supported-software/p/ParMETIS.md index 735908a9d2..f593f9a546 100644 --- a/docs/version-specific/supported-software/p/ParMETIS.md +++ b/docs/version-specific/supported-software/p/ParMETIS.md @@ -10,7 +10,6 @@ ParMETIS is an MPI-based parallel library that implements a variety of algorithm version | toolchain --------|---------- -``4.0.3`` | ``gompi/2021b`` ``4.0.3`` | ``gompi/2022a`` ``4.0.3`` | ``gompi/2022b`` ``4.0.3`` | ``gompi/2023a`` @@ -18,7 +17,6 @@ version | toolchain ``4.0.3`` | ``gompi/2024a`` ``4.0.3`` | ``gompi/2025a`` ``4.0.3`` | ``gompi/2025b`` -``4.0.3`` | ``iimpi/2021b`` ``4.0.3`` | ``iimpi/2023b`` ``4.0.3`` | ``lompi/2025b`` diff --git a/docs/version-specific/supported-software/p/ParaView.md b/docs/version-specific/supported-software/p/ParaView.md index e139af948b..a8c4e20b44 100644 --- a/docs/version-specific/supported-software/p/ParaView.md +++ b/docs/version-specific/supported-software/p/ParaView.md @@ -22,7 +22,6 @@ version | versionsuffix | toolchain ``5.13.2`` | | ``foss/2023a`` ``5.13.2`` | | ``foss/2023b`` ``5.13.2`` | | ``foss/2024a`` -``5.9.1`` | ``-mpi`` | ``foss/2021b`` ``6.0.1`` | | ``foss/2025a`` ``6.0.1`` | | ``foss/2025b`` diff --git a/docs/version-specific/supported-software/p/Parsnp.md b/docs/version-specific/supported-software/p/Parsnp.md index 34f4bf5c5c..7603c0dfef 100644 --- a/docs/version-specific/supported-software/p/Parsnp.md +++ b/docs/version-specific/supported-software/p/Parsnp.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2.1.1`` | ``foss/2023a`` ``2.1.1`` | ``foss/2023b`` +``2.1.5`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Perl.md b/docs/version-specific/supported-software/p/Perl.md index 5ac45f7e59..6e51d294a2 100644 --- a/docs/version-specific/supported-software/p/Perl.md +++ b/docs/version-specific/supported-software/p/Perl.md @@ -10,8 +10,6 @@ Larry Wall's Practical Extraction and Report Language This is a minimal build w version | versionsuffix | toolchain --------|---------------|---------- -``5.34.0`` | ``-minimal`` | ``GCCcore/11.2.0`` -``5.34.0`` | | ``GCCcore/11.2.0`` ``5.34.1`` | ``-minimal`` | ``GCCcore/11.3.0`` ``5.34.1`` | | ``GCCcore/11.3.0`` ``5.36.0`` | | ``GCCcore/12.1.0`` diff --git a/docs/version-specific/supported-software/p/Perseus.md b/docs/version-specific/supported-software/p/Perseus.md deleted file mode 100644 index e3db4d1388..0000000000 --- a/docs/version-specific/supported-software/p/Perseus.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Perseus - -The Perseus software platform supports biological and biomedical researchers in interpreting protein quantification, interaction and post-translational modification data. - -*homepage*: - -version | toolchain ---------|---------- -``2.0.7.0`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/Phantompeakqualtools.md b/docs/version-specific/supported-software/p/Phantompeakqualtools.md index b0f6411824..5946abd27a 100644 --- a/docs/version-specific/supported-software/p/Phantompeakqualtools.md +++ b/docs/version-specific/supported-software/p/Phantompeakqualtools.md @@ -10,7 +10,6 @@ It computes informative enrichment and quality measures for ChIP-seq/DNase-seq/F version | toolchain --------|---------- -``1.2.2`` | ``foss/2021b`` ``1.2.2`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/p/PhiPack.md b/docs/version-specific/supported-software/p/PhiPack.md index 11ab0866c8..612f1bc2e6 100644 --- a/docs/version-specific/supported-software/p/PhiPack.md +++ b/docs/version-specific/supported-software/p/PhiPack.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2016.06.14`` | ``GCC/12.3.0`` ``2016.06.14`` | ``GCC/13.2.0`` +``2016.06.14`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pillow-SIMD.md b/docs/version-specific/supported-software/p/Pillow-SIMD.md index 80a0af32d4..af9036646e 100644 --- a/docs/version-specific/supported-software/p/Pillow-SIMD.md +++ b/docs/version-specific/supported-software/p/Pillow-SIMD.md @@ -12,8 +12,6 @@ version | toolchain --------|---------- ``10.4.0`` | ``GCCcore/13.2.0`` ``10.4.0`` | ``GCCcore/13.3.0`` -``8.3.1`` | ``GCCcore/11.2.0`` -``8.3.2`` | ``GCCcore/11.2.0`` ``9.2.0`` | ``GCCcore/11.3.0`` ``9.5.0`` | ``GCCcore/12.2.0`` ``9.5.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/Pillow.md b/docs/version-specific/supported-software/p/Pillow.md index 061503ecc9..18b8df0569 100644 --- a/docs/version-specific/supported-software/p/Pillow.md +++ b/docs/version-specific/supported-software/p/Pillow.md @@ -15,9 +15,6 @@ version | toolchain ``10.4.0`` | ``GCCcore/13.3.0`` ``11.3.0`` | ``GCCcore/14.2.0`` ``11.3.0`` | ``GCCcore/14.3.0`` -``8.3.1`` | ``GCCcore/11.2.0`` -``8.3.2`` | ``GCCcore/11.2.0`` -``9.1.1`` | ``GCCcore/11.2.0`` ``9.1.1`` | ``GCCcore/11.3.0`` ``9.4.0`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/p/Pindel.md b/docs/version-specific/supported-software/p/Pindel.md index a27e184838..f71cc11b81 100644 --- a/docs/version-specific/supported-software/p/Pindel.md +++ b/docs/version-specific/supported-software/p/Pindel.md @@ -10,7 +10,6 @@ Pindel can detect breakpoints of large deletions, medium sized insertions, inve version | toolchain --------|---------- -``0.2.5b9-20170508`` | ``GCC/11.2.0`` ``0.2.5b9-20170508`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/p/Pint.md b/docs/version-specific/supported-software/p/Pint.md index db7ad5e4fe..2fe442373d 100644 --- a/docs/version-specific/supported-software/p/Pint.md +++ b/docs/version-specific/supported-software/p/Pint.md @@ -10,7 +10,6 @@ Pint is a Python package to define, operate and manipulate physical quantities: version | toolchain --------|---------- -``0.19.2`` | ``GCCcore/11.2.0`` ``0.22`` | ``GCCcore/11.3.0`` ``0.23`` | ``GCCcore/12.3.0`` ``0.24`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/p/PnetCDF.md b/docs/version-specific/supported-software/p/PnetCDF.md index bb3f3ed907..20b2803c36 100644 --- a/docs/version-specific/supported-software/p/PnetCDF.md +++ b/docs/version-specific/supported-software/p/PnetCDF.md @@ -10,7 +10,6 @@ Parallel netCDF: A Parallel I/O Library for NetCDF File Access version | toolchain --------|---------- -``1.12.3`` | ``gompi/2021b`` ``1.12.3`` | ``gompi/2022a`` ``1.12.3`` | ``gompi/2023a`` ``1.12.3`` | ``iimpi/2022a`` @@ -24,6 +23,7 @@ version | toolchain ``1.14.0`` | ``iimpi/2025a`` ``1.14.1`` | ``gompi/2025b`` ``1.14.1`` | ``iimpi/2025b`` +``1.14.1`` | ``lompi/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Polyscope.md b/docs/version-specific/supported-software/p/Polyscope.md new file mode 100644 index 0000000000..f614fe8449 --- /dev/null +++ b/docs/version-specific/supported-software/p/Polyscope.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Polyscope + +Polyscope is a C++/Python viewer and user interface for 3D data such as meshes and point clouds. It allows you to register your data and quickly generate informative and beautiful visualizations, either programmatically or via a dynamic GUI. Polyscope is designed to be lightweight—it does not “take ownership” over your entire program, and it is easy to integrate with existing codebases and popular libraries. The lofty objective of Polyscope is to offer a useful visual interface to your data via a single line of code. + +*homepage*: + +version | toolchain +--------|---------- +``2.2.1`` | ``gfbf/2023b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/Porechop.md b/docs/version-specific/supported-software/p/Porechop.md index 432e7216fb..075b8acf8a 100644 --- a/docs/version-specific/supported-software/p/Porechop.md +++ b/docs/version-specific/supported-software/p/Porechop.md @@ -11,7 +11,6 @@ Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. version | toolchain --------|---------- ``0.2.4-20240119`` | ``GCCcore/12.3.0`` -``0.2.4`` | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PostgreSQL.md b/docs/version-specific/supported-software/p/PostgreSQL.md index 9ae04f58c7..6856ca5f96 100644 --- a/docs/version-specific/supported-software/p/PostgreSQL.md +++ b/docs/version-specific/supported-software/p/PostgreSQL.md @@ -10,7 +10,6 @@ PostgreSQL is a powerful, open source object-relational database system. It is version | toolchain --------|---------- -``13.4`` | ``GCCcore/11.2.0`` ``14.4`` | ``GCCcore/11.3.0`` ``15.2`` | ``GCCcore/12.2.0`` ``16.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/Proteinortho.md b/docs/version-specific/supported-software/p/Proteinortho.md index e04aca081c..37b6cd25cc 100644 --- a/docs/version-specific/supported-software/p/Proteinortho.md +++ b/docs/version-specific/supported-software/p/Proteinortho.md @@ -10,7 +10,6 @@ Proteinortho is a tool to detect orthologous genes within different species. version | toolchain --------|---------- -``6.2.3`` | ``foss/2021b`` ``6.3.2`` | ``foss/2023a`` ``6.3.4`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/p/PsiCLASS.md b/docs/version-specific/supported-software/p/PsiCLASS.md deleted file mode 100644 index 7aa4de1d13..0000000000 --- a/docs/version-specific/supported-software/p/PsiCLASS.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PsiCLASS - -PsiCLASS is a reference-based transcriptome assembler for single or multiple RNA-seq samples. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.3`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyAMG.md b/docs/version-specific/supported-software/p/PyAMG.md index 558966df99..1909bc1ce3 100644 --- a/docs/version-specific/supported-software/p/PyAMG.md +++ b/docs/version-specific/supported-software/p/PyAMG.md @@ -13,6 +13,7 @@ version | toolchain ``5.1.0`` | ``foss/2023a`` ``5.2.1`` | ``gfbf/2023b`` ``5.3.0`` | ``gfbf/2024a`` +``5.3.0`` | ``gfbf/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyCBC.md b/docs/version-specific/supported-software/p/PyCBC.md new file mode 100644 index 0000000000..6b95845ca0 --- /dev/null +++ b/docs/version-specific/supported-software/p/PyCBC.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# PyCBC + +PyCBC is a software package used to explore astrophysical sources of gravitational waves. It contains algorithms that can detect coalescing compact binaries and measure the astrophysical parameters of detected sources. + +*homepage*: + +version | toolchain +--------|---------- +``2.10.0`` | ``foss/2025b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/PyCairo.md b/docs/version-specific/supported-software/p/PyCairo.md index e4c91f9bb8..80e6519430 100644 --- a/docs/version-specific/supported-software/p/PyCairo.md +++ b/docs/version-specific/supported-software/p/PyCairo.md @@ -10,7 +10,6 @@ Python bindings for the cairo library version | toolchain --------|---------- -``1.20.1`` | ``GCCcore/11.2.0`` ``1.21.0`` | ``GCCcore/11.3.0`` ``1.24.0`` | ``GCCcore/12.2.0`` ``1.25.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/PyCalib.md b/docs/version-specific/supported-software/p/PyCalib.md index f606dc0571..cc6b52ca60 100644 --- a/docs/version-specific/supported-software/p/PyCalib.md +++ b/docs/version-specific/supported-software/p/PyCalib.md @@ -10,7 +10,6 @@ Python library for classifier calibration version | toolchain --------|---------- -``0.1.0.dev0`` | ``foss/2021b`` ``20230531`` | ``gfbf/2022b`` diff --git a/docs/version-specific/supported-software/p/PyCharm.md b/docs/version-specific/supported-software/p/PyCharm.md index 10391c5068..8a5e461109 100644 --- a/docs/version-specific/supported-software/p/PyCharm.md +++ b/docs/version-specific/supported-software/p/PyCharm.md @@ -15,6 +15,7 @@ version | toolchain ``2022.3.2`` | ``system`` ``2024.1.6`` | ``system`` ``2025.2.0.1`` | ``system`` +``2025.3.2.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyEVTK.md b/docs/version-specific/supported-software/p/PyEVTK.md index b0575ca5a0..193ce9ee0a 100644 --- a/docs/version-specific/supported-software/p/PyEVTK.md +++ b/docs/version-specific/supported-software/p/PyEVTK.md @@ -4,15 +4,13 @@ search: --- # PyEVTK -PyEVTK (Python Export VTK) exports data to binary VTK files for visualization/analysis with packages like Paraview, VisIt, and Mayavii. +EVTK (Export VTK) package allows exporting data to binary VTK files for visualization and data analysis with any of the visualization packages that support VTK files -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.4.1`` | ``foss/2021b`` ``1.6.0`` | ``gfbf/2023a`` -``2.0.0`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyFrag.md b/docs/version-specific/supported-software/p/PyFrag.md index bd690598e8..f48f04597d 100644 --- a/docs/version-specific/supported-software/p/PyFrag.md +++ b/docs/version-specific/supported-software/p/PyFrag.md @@ -10,6 +10,8 @@ The PyFrag program is specially designed to facilitate the analysis of reaction version | versionsuffix | toolchain --------|---------------|---------- +``1.0.0`` | ``-ASA`` | ``foss/2024a`` +``1.0.0`` | ``-ASA`` | ``foss/2025a`` ``2023-dev.20240220`` | ``-ASA`` | ``intel/2022a`` diff --git a/docs/version-specific/supported-software/p/PyMC.md b/docs/version-specific/supported-software/p/PyMC.md index bce79af262..25afd46ca5 100644 --- a/docs/version-specific/supported-software/p/PyMC.md +++ b/docs/version-specific/supported-software/p/PyMC.md @@ -10,8 +10,6 @@ PyMC is a probabilistic programming library for Python that allows users to buil version | toolchain --------|---------- -``2.3.8`` | ``foss/2021b`` -``2.3.8`` | ``intel/2021b`` ``5.22.0`` | ``foss/2024a`` ``5.9.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/PyMC3.md b/docs/version-specific/supported-software/p/PyMC3.md deleted file mode 100644 index fc392ed5cd..0000000000 --- a/docs/version-specific/supported-software/p/PyMC3.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# PyMC3 - -Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano - -*homepage*: - -version | toolchain ---------|---------- -``3.11.1`` | ``foss/2021b`` -``3.11.1`` | ``intel/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/PyOpenCL.md b/docs/version-specific/supported-software/p/PyOpenCL.md index a28798bff0..a82dfb1695 100644 --- a/docs/version-specific/supported-software/p/PyOpenCL.md +++ b/docs/version-specific/supported-software/p/PyOpenCL.md @@ -10,8 +10,6 @@ PyOpenCL lets you access GPUs and other massively parallel compute devices from version | versionsuffix | toolchain --------|---------------|---------- -``2021.2.13`` | ``-CUDA-11.4.1`` | ``foss/2021b`` -``2021.2.13`` | | ``foss/2021b`` ``2023.1.4`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``2023.1.4`` | | ``foss/2022a`` ``2023.1.4`` | ``-CUDA-12.1.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/PyOpenGL.md b/docs/version-specific/supported-software/p/PyOpenGL.md index 0ce58fb0bc..8cfe2797b6 100644 --- a/docs/version-specific/supported-software/p/PyOpenGL.md +++ b/docs/version-specific/supported-software/p/PyOpenGL.md @@ -12,10 +12,10 @@ version | toolchain --------|---------- ``3.1.10`` | ``GCCcore/14.2.0`` ``3.1.10`` | ``GCCcore/14.3.0`` -``3.1.6`` | ``GCCcore/11.2.0`` ``3.1.6`` | ``GCCcore/11.3.0`` ``3.1.7`` | ``GCCcore/12.3.0`` ``3.1.9`` | ``GCCcore/13.2.0`` +``3.1.9`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyQt5.md b/docs/version-specific/supported-software/p/PyQt5.md index 27eb78232b..0ebc67b2b7 100644 --- a/docs/version-specific/supported-software/p/PyQt5.md +++ b/docs/version-specific/supported-software/p/PyQt5.md @@ -13,7 +13,6 @@ version | toolchain ``5.15.10`` | ``GCCcore/12.3.0`` ``5.15.10`` | ``GCCcore/13.2.0`` ``5.15.11`` | ``GCCcore/13.3.0`` -``5.15.4`` | ``GCCcore/11.2.0`` ``5.15.5`` | ``GCCcore/11.3.0`` ``5.15.7`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/p/PyQtGraph.md b/docs/version-specific/supported-software/p/PyQtGraph.md index 5dd5e0c68c..2e9fd5bd9e 100644 --- a/docs/version-specific/supported-software/p/PyQtGraph.md +++ b/docs/version-specific/supported-software/p/PyQtGraph.md @@ -12,6 +12,8 @@ version | toolchain --------|---------- ``0.13.3`` | ``foss/2022a`` ``0.13.7`` | ``foss/2023a`` +``0.14.0`` | ``foss/2024a`` +``0.14.0`` | ``intel/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyRosetta.md b/docs/version-specific/supported-software/p/PyRosetta.md index 2fc128857b..fd2237c1ac 100644 --- a/docs/version-specific/supported-software/p/PyRosetta.md +++ b/docs/version-specific/supported-software/p/PyRosetta.md @@ -10,6 +10,7 @@ PyRosetta is an interactive Python-based interface to the powerful Rosetta molec version | toolchain --------|---------- +``4.r420`` | ``gompi/2025a`` ``4.release-384`` | ``gompi/2022a`` ``4.release-387`` | ``gompi/2023a`` diff --git a/docs/version-specific/supported-software/p/PySCF.md b/docs/version-specific/supported-software/p/PySCF.md index c75a3fcaf0..cb379725b3 100644 --- a/docs/version-specific/supported-software/p/PySCF.md +++ b/docs/version-specific/supported-software/p/PySCF.md @@ -11,6 +11,7 @@ PySCF is an open-source collection of electronic structure modules powered by Py version | toolchain --------|---------- ``2.1.1`` | ``foss/2022a`` +``2.11.0`` | ``foss/2025a`` ``2.4.0`` | ``foss/2022b`` ``2.7.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/PyStan.md b/docs/version-specific/supported-software/p/PyStan.md index 0d7b0136f7..d2961435fe 100644 --- a/docs/version-specific/supported-software/p/PyStan.md +++ b/docs/version-specific/supported-software/p/PyStan.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``3.10.0`` | ``foss/2024a`` ``3.10.0`` | ``foss/2025a`` -``3.5.0`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/PyTables.md b/docs/version-specific/supported-software/p/PyTables.md index 1305dab0d8..3c2db5c437 100644 --- a/docs/version-specific/supported-software/p/PyTables.md +++ b/docs/version-specific/supported-software/p/PyTables.md @@ -13,7 +13,6 @@ version | toolchain ``3.10.2`` | ``foss/2024a`` ``3.10.2`` | ``foss/2025a`` ``3.10.2`` | ``foss/2025b`` -``3.6.1`` | ``foss/2021b`` ``3.8.0`` | ``foss/2022a`` ``3.8.0`` | ``foss/2022b`` ``3.8.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/PyTorch.md b/docs/version-specific/supported-software/p/PyTorch.md index c40ad932a1..03e51d311f 100644 --- a/docs/version-specific/supported-software/p/PyTorch.md +++ b/docs/version-specific/supported-software/p/PyTorch.md @@ -12,8 +12,6 @@ version | versionsuffix | toolchain --------|---------------|---------- ``1.12.0`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``1.12.0`` | | ``foss/2022a`` -``1.12.1`` | ``-CUDA-11.5.2`` | ``foss/2021b`` -``1.12.1`` | | ``foss/2021b`` ``1.12.1`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``1.12.1`` | | ``foss/2022a`` ``1.13.1`` | ``-CUDA-11.7.0`` | ``foss/2022a`` @@ -32,6 +30,7 @@ version | versionsuffix | toolchain ``2.3.0`` | | ``foss/2023b`` ``2.6.0`` | | ``foss/2024a`` ``2.7.1`` | ``-CUDA-12.6.0`` | ``foss/2024a`` +``2.9.1`` | ``-CUDA-12.6.0`` | ``foss/2024a`` ``2.9.1`` | | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/p/PyWBGT.md b/docs/version-specific/supported-software/p/PyWBGT.md index 3e118d78ae..171cf783a5 100644 --- a/docs/version-specific/supported-software/p/PyWBGT.md +++ b/docs/version-specific/supported-software/p/PyWBGT.md @@ -10,7 +10,6 @@ Cython source code for estimating wet bulb globe temperature (WBGT) from dataset version | toolchain --------|---------- -``1.0.0`` | ``foss/2021b`` ``1.0.0`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/p/PyYAML.md b/docs/version-specific/supported-software/p/PyYAML.md index c943517dce..45093c5f16 100644 --- a/docs/version-specific/supported-software/p/PyYAML.md +++ b/docs/version-specific/supported-software/p/PyYAML.md @@ -8,17 +8,15 @@ PyYAML is a YAML parser and emitter for the Python programming language. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``5.4.1`` | ``-Python-2.7.18`` | ``GCCcore/11.2.0`` -``5.4.1`` | | ``GCCcore/11.2.0`` -``6.0`` | | ``GCCcore/11.3.0`` -``6.0`` | | ``GCCcore/12.2.0`` -``6.0`` | | ``GCCcore/12.3.0`` -``6.0.1`` | | ``GCCcore/13.2.0`` -``6.0.2`` | | ``GCCcore/13.3.0`` -``6.0.2`` | | ``GCCcore/14.2.0`` -``6.0.2`` | | ``GCCcore/14.3.0`` +version | toolchain +--------|---------- +``6.0`` | ``GCCcore/11.3.0`` +``6.0`` | ``GCCcore/12.2.0`` +``6.0`` | ``GCCcore/12.3.0`` +``6.0.1`` | ``GCCcore/13.2.0`` +``6.0.2`` | ``GCCcore/13.3.0`` +``6.0.2`` | ``GCCcore/14.2.0`` +``6.0.2`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pychopper.md b/docs/version-specific/supported-software/p/Pychopper.md index 0dbb61989d..24a8080464 100644 --- a/docs/version-specific/supported-software/p/Pychopper.md +++ b/docs/version-specific/supported-software/p/Pychopper.md @@ -11,6 +11,7 @@ A tool to identify, orient, trim and rescue full length cDNA reads. version | toolchain --------|---------- ``2.7.10`` | ``foss/2023a`` +``2.7.10`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pylint.md b/docs/version-specific/supported-software/p/Pylint.md index 3cd62359d6..9a6adfbd8d 100644 --- a/docs/version-specific/supported-software/p/Pylint.md +++ b/docs/version-specific/supported-software/p/Pylint.md @@ -13,6 +13,7 @@ version | toolchain ``2.17.4`` | ``GCCcore/12.2.0`` ``3.0.4`` | ``GCCcore/12.3.0`` ``3.2.5`` | ``GCCcore/13.2.0`` +``3.3.9`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/Pyomo.md b/docs/version-specific/supported-software/p/Pyomo.md index 03e236b126..f4b6198e87 100644 --- a/docs/version-specific/supported-software/p/Pyomo.md +++ b/docs/version-specific/supported-software/p/Pyomo.md @@ -10,6 +10,7 @@ Pyomo is a Python-based open-source software package that supports a diverse set version | toolchain --------|---------- +``6.10.0`` | ``gompi/2025a`` ``6.4.2`` | ``foss/2022a`` ``6.5.0`` | ``foss/2022b`` ``6.7.3`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/Pysam.md b/docs/version-specific/supported-software/p/Pysam.md index 1292c871d9..738a6ed6a1 100644 --- a/docs/version-specific/supported-software/p/Pysam.md +++ b/docs/version-specific/supported-software/p/Pysam.md @@ -10,9 +10,6 @@ Pysam is a python module for reading and manipulating Samfiles. It's a lightwei version | versionsuffix | toolchain --------|---------------|---------- -``0.17.0`` | ``-Python-2.7.18`` | ``GCC/11.2.0`` -``0.17.0`` | | ``GCC/11.2.0`` -``0.18.0`` | | ``GCC/11.2.0`` ``0.19.1`` | | ``GCC/11.3.0`` ``0.20.0`` | | ``GCC/11.3.0`` ``0.20.0`` | ``-Python-2.7.18`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/p/Python.md b/docs/version-specific/supported-software/p/Python.md index 665b65cac1..60ba012c49 100644 --- a/docs/version-specific/supported-software/p/Python.md +++ b/docs/version-specific/supported-software/p/Python.md @@ -10,8 +10,6 @@ Python is a programming language that lets you work more quickly and integrate y version | versionsuffix | toolchain --------|---------------|---------- -``2.7.18`` | ``-bare`` | ``GCCcore/11.2.0`` -``2.7.18`` | | ``GCCcore/11.2.0`` ``2.7.18`` | ``-bare`` | ``GCCcore/11.3.0`` ``2.7.18`` | ``-bare`` | ``GCCcore/12.2.0`` ``2.7.18`` | | ``GCCcore/12.3.0`` @@ -26,8 +24,6 @@ version | versionsuffix | toolchain ``3.13.1`` | | ``GCCcore/14.2.0`` ``3.13.5`` | | ``GCCcore/14.3.0`` ``3.14.2`` | | ``GCCcore/15.2.0`` -``3.9.6`` | ``-bare`` | ``GCCcore/11.2.0`` -``3.9.6`` | | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/index.md b/docs/version-specific/supported-software/p/index.md index 949fac36bf..ad900b997c 100644 --- a/docs/version-specific/supported-software/p/index.md +++ b/docs/version-specific/supported-software/p/index.md @@ -16,7 +16,6 @@ search: * [pagmo](pagmo.md) * [pairix](pairix.md) * [pairtools](pairtools.md) - * [paladin](paladin.md) * [Palantir](Palantir.md) * [PALEOMIX](PALEOMIX.md) * [PALM](PALM.md) @@ -24,7 +23,6 @@ search: * [panaroo](panaroo.md) * [Pandoc](Pandoc.md) * [Pango](Pango.md) - * [pangolin](pangolin.md) * [pangomm](pangomm.md) * [Panoply](Panoply.md) * [PAPI](PAPI.md) @@ -51,7 +49,7 @@ search: * [pathos](pathos.md) * [PAUP](PAUP.md) * [pauvre](pauvre.md) - * [pbipa](pbipa.md) + * [pb-CpG-tools](pb-CpG-tools.md) * [pblat](pblat.md) * [PBZIP2](PBZIP2.md) * [PCAngsd](PCAngsd.md) @@ -72,7 +70,6 @@ search: * [PeptideShaker](PeptideShaker.md) * [Perl](Perl.md) * [Perl-bundle-CPAN](Perl-bundle-CPAN.md) - * [Perseus](Perseus.md) * [PETSc](PETSc.md) * [petsc4py](petsc4py.md) * [PfamScan](PfamScan.md) @@ -141,6 +138,7 @@ search: * [poetry](poetry.md) * [polars](polars.md) * [polymake](polymake.md) + * [Polyscope](Polyscope.md) * [PoPoolation-TE2](PoPoolation-TE2.md) * [poppler](poppler.md) * [poppunk](poppunk.md) @@ -155,7 +153,6 @@ search: * [POV-Ray](POV-Ray.md) * [powerlaw](powerlaw.md) * [pp-sketchlib](pp-sketchlib.md) - * [PPanGGOLiN](PPanGGOLiN.md) * [ppl](ppl.md) * [pplacer](pplacer.md) * [pplpy](pplpy.md) @@ -164,14 +161,12 @@ search: * [pre-commit](pre-commit.md) * [preCICE](preCICE.md) * [premailer](premailer.md) - * [PREQUAL](PREQUAL.md) * [preseq](preseq.md) * [presto](presto.md) * [PretextMap](PretextMap.md) * [pretty-yaml](pretty-yaml.md) * [primecount](primecount.md) * [primecountpy](primecountpy.md) - * [PRINSEQ](PRINSEQ.md) * [ProBiS](ProBiS.md) * [prodigal](prodigal.md) * [PROJ](PROJ.md) @@ -188,11 +183,9 @@ search: * [PRSice](PRSice.md) * [PSASS](PSASS.md) * [PSI4](PSI4.md) - * [PsiCLASS](PsiCLASS.md) * [PSIPRED](PSIPRED.md) * [PSM2](PSM2.md) * [psmc](psmc.md) - * [PSolver](PSolver.md) * [pstoedit](pstoedit.md) * [psutil](psutil.md) * [psycopg](psycopg.md) @@ -222,6 +215,7 @@ search: * [PyBullet](PyBullet.md) * [PyCairo](PyCairo.md) * [PyCalib](PyCalib.md) + * [PyCBC](PyCBC.md) * [pyccel](pyccel.md) * [PyCharm](PyCharm.md) * [PyCheMPS2](PyCheMPS2.md) @@ -243,7 +237,6 @@ search: * [pyet](pyet.md) * [PyEVTK](PyEVTK.md) * [PyEXR](PyEXR.md) - * [pyFAI](pyFAI.md) * [pyfaidx](pyfaidx.md) * [pyfasta](pyfasta.md) * [pyFFTW](pyFFTW.md) @@ -262,15 +255,12 @@ search: * [pyiron-gpl](pyiron-gpl.md) * [pylibxc](pylibxc.md) * [Pylint](Pylint.md) - * [pylipid](pylipid.md) * [pyMannKendall](pyMannKendall.md) * [pymatgen](pymatgen.md) * [pyMBE](pyMBE.md) * [PyMC](PyMC.md) - * [PyMC3](PyMC3.md) - * [pymca](pymca.md) * [PyMDE](PyMDE.md) - * [pyobjcryst](pyobjcryst.md) + * [pyNVML](pyNVML.md) * [pyodbc](pyodbc.md) * [Pyomo](Pyomo.md) * [PyOpenCL](PyOpenCL.md) @@ -287,6 +277,7 @@ search: * [PyQt5](PyQt5.md) * [PyQt6](PyQt6.md) * [PyQtGraph](PyQtGraph.md) + * [pyrho](pyrho.md) * [pyro-ppl](pyro-ppl.md) * [PyRosetta](PyRosetta.md) * [pyrosm](pyrosm.md) @@ -307,10 +298,12 @@ search: * [pystring](pystring.md) * [PyTables](PyTables.md) * [PyTensor](PyTensor.md) + * [pyteomics](pyteomics.md) * [pytesseract](pytesseract.md) * [pytest](pytest.md) * [pytest-cpp](pytest-cpp.md) * [pytest-flakefinder](pytest-flakefinder.md) + * [pytest-forked](pytest-forked.md) * [pytest-rerunfailures](pytest-rerunfailures.md) * [pytest-shard](pytest-shard.md) * [pytest-subtests](pytest-subtests.md) @@ -319,6 +312,7 @@ search: * [pythermalcomfort](pythermalcomfort.md) * [PYTHIA](PYTHIA.md) * [Python](Python.md) + * [python-bidi](python-bidi.md) * [python-blosc](python-blosc.md) * [Python-bundle](Python-bundle.md) * [Python-bundle-PyPI](Python-bundle-PyPI.md) @@ -339,6 +333,7 @@ search: * [python-slugify](python-slugify.md) * [python-xxhash](python-xxhash.md) * [python-zlib-ng](python-zlib-ng.md) + * [pytmatrix](pytmatrix.md) * [PyTorch](PyTorch.md) * [pytorch-3dunet](pytorch-3dunet.md) * [PyTorch-bundle](PyTorch-bundle.md) diff --git a/docs/version-specific/supported-software/p/p11-kit.md b/docs/version-specific/supported-software/p/p11-kit.md index 795b47c709..89928d5d76 100644 --- a/docs/version-specific/supported-software/p/p11-kit.md +++ b/docs/version-specific/supported-software/p/p11-kit.md @@ -10,7 +10,6 @@ Provides a way to load and enumerate PKCS#11 modules. Provides a standard confi version | toolchain --------|---------- -``0.24.1`` | ``GCCcore/11.2.0`` ``0.24.1`` | ``GCCcore/11.3.0`` ``0.25.10`` | ``GCCcore/14.2.0`` ``0.25.10`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/p/p7zip.md b/docs/version-specific/supported-software/p/p7zip.md index bd22bac729..9ce2710da7 100644 --- a/docs/version-specific/supported-software/p/p7zip.md +++ b/docs/version-specific/supported-software/p/p7zip.md @@ -10,7 +10,6 @@ p7zip is a quick port of 7z.exe and 7za.exe (CLI version of 7zip) for Unix. 7-Zi version | toolchain --------|---------- -``17.04`` | ``GCCcore/11.2.0`` ``17.04`` | ``GCCcore/11.3.0`` ``17.04`` | ``GCCcore/12.3.0`` ``17.05`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/p/pagmo.md b/docs/version-specific/supported-software/p/pagmo.md index edecc75feb..311d944778 100644 --- a/docs/version-specific/supported-software/p/pagmo.md +++ b/docs/version-specific/supported-software/p/pagmo.md @@ -10,7 +10,6 @@ pagmo is a C++ scientific library for massively parallel optimization. version | toolchain --------|---------- -``2.18.0`` | ``foss/2021b`` ``2.18.0`` | ``foss/2022a`` ``2.19.0`` | ``gfbf/2022b`` ``2.19.1`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/p/paladin.md b/docs/version-specific/supported-software/p/paladin.md deleted file mode 100644 index 7586389c47..0000000000 --- a/docs/version-specific/supported-software/p/paladin.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# paladin - -Protein ALignment And Detection INterface PALADIN is a protein sequence alignment tool designed for the accurate functional characterization of metagenomes. - -*homepage*: - -version | toolchain ---------|---------- -``1.4.6`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/panaroo.md b/docs/version-specific/supported-software/p/panaroo.md index 423db5d5cd..7199c58389 100644 --- a/docs/version-specific/supported-software/p/panaroo.md +++ b/docs/version-specific/supported-software/p/panaroo.md @@ -10,8 +10,8 @@ A pangenome analysis pipeline. version | toolchain --------|---------- -``1.3.2`` | ``foss/2021b`` ``1.5.1`` | ``foss/2023a`` +``1.6.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pangolin.md b/docs/version-specific/supported-software/p/pangolin.md deleted file mode 100644 index 87362c3ed2..0000000000 --- a/docs/version-specific/supported-software/p/pangolin.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pangolin - -Software package for assigning SARS-CoV-2 genome sequences to global lineages. This module also contains the faToVcf tool - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.1.16`` | ``-pangoLEARN-2021-10-18`` | ``foss/2021b`` -``3.1.16`` | ``-pangoLEARN-2021-11-25`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/parallel.md b/docs/version-specific/supported-software/p/parallel.md index 6dc31b7dd7..fc4845ecd9 100644 --- a/docs/version-specific/supported-software/p/parallel.md +++ b/docs/version-specific/supported-software/p/parallel.md @@ -10,7 +10,6 @@ parallel: Build and execute shell commands in parallel version | toolchain --------|---------- -``20210722`` | ``GCCcore/11.2.0`` ``20220722`` | ``GCCcore/11.3.0`` ``20230722`` | ``GCCcore/12.2.0`` ``20230722`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/parasail.md b/docs/version-specific/supported-software/p/parasail.md index 56aeb9492b..b278da5cc7 100644 --- a/docs/version-specific/supported-software/p/parasail.md +++ b/docs/version-specific/supported-software/p/parasail.md @@ -10,7 +10,6 @@ parasail is a SIMD C (C99) library containing implementations of the Smith-Wate version | toolchain --------|---------- -``2.5`` | ``GCC/11.2.0`` ``2.6`` | ``GCC/11.3.0`` ``2.6.2`` | ``GCC/12.2.0`` ``2.6.2`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/p/patchelf.md b/docs/version-specific/supported-software/p/patchelf.md index c99f7d182f..ce5c7d9035 100644 --- a/docs/version-specific/supported-software/p/patchelf.md +++ b/docs/version-specific/supported-software/p/patchelf.md @@ -10,7 +10,6 @@ PatchELF is a small utility to modify the dynamic linker and RPATH of ELF execut version | toolchain --------|---------- -``0.13`` | ``GCCcore/11.2.0`` ``0.15.0`` | ``GCCcore/11.3.0`` ``0.17.2`` | ``GCCcore/12.2.0`` ``0.18.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/pymca.md b/docs/version-specific/supported-software/p/pb-CpG-tools.md similarity index 81% rename from docs/version-specific/supported-software/p/pymca.md rename to docs/version-specific/supported-software/p/pb-CpG-tools.md index 024421d142..04ef2f3405 100644 --- a/docs/version-specific/supported-software/p/pymca.md +++ b/docs/version-specific/supported-software/p/pb-CpG-tools.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# pymca +# pb-CpG-tools -The PyMca X-Ray Fluorescence Toolkit, including PyMca5 and fisx. +Collection of tools for the analysis of CpG data -*homepage*: +*homepage*: version | toolchain --------|---------- -``5.7.6`` | ``foss/2021b`` +``3.0.0`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pbipa.md b/docs/version-specific/supported-software/p/pbipa.md deleted file mode 100644 index 970e47336a..0000000000 --- a/docs/version-specific/supported-software/p/pbipa.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pbipa - -Improved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBio HiFi reads to produce high-quality phased genome assemblies. IPA is an end-to-end solution, starting with input reads and resulting in a polished assembly. IPA is fast, providing an easy to use local run mode or a distributed pipeline for a cluster. - -*homepage*: - -version | toolchain ---------|---------- -``1.8.0`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pfind.md b/docs/version-specific/supported-software/p/pfind.md index d294a62ee8..dbdf048427 100644 --- a/docs/version-specific/supported-software/p/pfind.md +++ b/docs/version-specific/supported-software/p/pfind.md @@ -10,7 +10,6 @@ Drop-in replacement for find, implemented for using parallel access and MPI. version | toolchain --------|---------- -``20220613`` | ``gompi/2021b`` ``20250510`` | ``gompi/2024a`` diff --git a/docs/version-specific/supported-software/p/pftoolsV3.md b/docs/version-specific/supported-software/p/pftoolsV3.md index af393c93f4..2e94d5c382 100644 --- a/docs/version-specific/supported-software/p/pftoolsV3.md +++ b/docs/version-specific/supported-software/p/pftoolsV3.md @@ -10,7 +10,6 @@ A suite of tools to build and search generalized profiles (protein and DNA). version | toolchain --------|---------- -``3.2.12`` | ``GCCcore/11.2.0`` ``3.2.12`` | ``GCCcore/11.3.0`` ``3.2.13`` | ``GCCcore/14.2.0`` diff --git a/docs/version-specific/supported-software/p/phylo-treetime.md b/docs/version-specific/supported-software/p/phylo-treetime.md index fb0158eeff..5734c4e29a 100644 --- a/docs/version-specific/supported-software/p/phylo-treetime.md +++ b/docs/version-specific/supported-software/p/phylo-treetime.md @@ -11,6 +11,7 @@ TreeTime provides routines for ancestral sequence reconstruction and inference o version | toolchain --------|---------- ``0.11.4`` | ``foss/2023a`` +``0.11.4`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/picard.md b/docs/version-specific/supported-software/p/picard.md index a6ee5e572e..9850109085 100644 --- a/docs/version-specific/supported-software/p/picard.md +++ b/docs/version-specific/supported-software/p/picard.md @@ -10,7 +10,6 @@ A set of tools (in Java) for working with next generation sequencing data in the version | versionsuffix | toolchain --------|---------------|---------- -``2.25.0`` | ``-Java-11`` | ``system`` ``2.25.1`` | ``-Java-11`` | ``system`` ``2.26.10`` | ``-Java-15`` | ``system`` ``3.0.0`` | ``-Java-17`` | ``system`` diff --git a/docs/version-specific/supported-software/p/pigz.md b/docs/version-specific/supported-software/p/pigz.md index e498453b40..3e03658e79 100644 --- a/docs/version-specific/supported-software/p/pigz.md +++ b/docs/version-specific/supported-software/p/pigz.md @@ -10,7 +10,6 @@ pigz, which stands for parallel implementation of gzip, is a fully functional r version | toolchain --------|---------- -``2.6`` | ``GCCcore/11.2.0`` ``2.7`` | ``GCCcore/11.3.0`` ``2.7`` | ``GCCcore/12.2.0`` ``2.8`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/pixman.md b/docs/version-specific/supported-software/p/pixman.md index 97840e522c..8c155c851a 100644 --- a/docs/version-specific/supported-software/p/pixman.md +++ b/docs/version-specific/supported-software/p/pixman.md @@ -10,7 +10,6 @@ Pixman is a low-level software library for pixel manipulation, providing featur version | toolchain --------|---------- -``0.40.0`` | ``GCCcore/11.2.0`` ``0.40.0`` | ``GCCcore/11.3.0`` ``0.42.2`` | ``GCCcore/12.2.0`` ``0.42.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/pkg-config.md b/docs/version-specific/supported-software/p/pkg-config.md index 142dbfd495..6484462bf2 100644 --- a/docs/version-specific/supported-software/p/pkg-config.md +++ b/docs/version-specific/supported-software/p/pkg-config.md @@ -10,7 +10,6 @@ pkg-config is a helper tool used when compiling applications and libraries. It version | toolchain --------|---------- -``0.29.2`` | ``GCCcore/11.2.0`` ``0.29.2`` | ``GCCcore/11.3.0`` ``0.29.2`` | ``GCCcore/12.2.0`` ``0.29.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/pkgconf.md b/docs/version-specific/supported-software/p/pkgconf.md index 4289cd0769..89c7cd5043 100644 --- a/docs/version-specific/supported-software/p/pkgconf.md +++ b/docs/version-specific/supported-software/p/pkgconf.md @@ -10,7 +10,6 @@ pkgconf is a program which helps to configure compiler and linker flags for deve version | toolchain --------|---------- -``1.8.0`` | ``GCCcore/11.2.0`` ``1.8.0`` | ``GCCcore/11.3.0`` ``1.8.0`` | ``system`` ``1.9.3`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/p/pkgconfig.md b/docs/version-specific/supported-software/p/pkgconfig.md index b7ee5aeaf4..9f297632b2 100644 --- a/docs/version-specific/supported-software/p/pkgconfig.md +++ b/docs/version-specific/supported-software/p/pkgconfig.md @@ -10,7 +10,6 @@ pkgconfig is a Python module to interface with the pkg-config command line tool version | versionsuffix | toolchain --------|---------------|---------- -``1.5.5`` | ``-python`` | ``GCCcore/11.2.0`` ``1.5.5`` | ``-python`` | ``GCCcore/11.3.0`` ``1.5.5`` | ``-python`` | ``GCCcore/12.2.0`` ``1.5.5`` | ``-python`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/plotly.py.md b/docs/version-specific/supported-software/p/plotly.py.md index 1a7cbffb86..d0e2106469 100644 --- a/docs/version-specific/supported-software/p/plotly.py.md +++ b/docs/version-specific/supported-software/p/plotly.py.md @@ -15,7 +15,6 @@ version | toolchain ``5.16.0`` | ``GCCcore/12.3.0`` ``5.18.0`` | ``GCCcore/13.2.0`` ``5.24.1`` | ``GCCcore/13.3.0`` -``5.4.0`` | ``GCCcore/11.2.0`` ``6.3.1`` | ``GCCcore/14.2.0`` ``6.5.0`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/p/pocl.md b/docs/version-specific/supported-software/p/pocl.md index 348c852406..0a13443700 100644 --- a/docs/version-specific/supported-software/p/pocl.md +++ b/docs/version-specific/supported-software/p/pocl.md @@ -6,11 +6,10 @@ search: Pocl is a portable open source (MIT-licensed) implementation of the OpenCL standard -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.8`` | | ``GCC/11.2.0`` ``1.8`` | ``-CUDA-11.7.0`` | ``GCC/11.3.0`` ``1.8`` | | ``GCC/11.3.0`` ``4.0`` | ``-CUDA-12.1.1`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/p/pod5-file-format.md b/docs/version-specific/supported-software/p/pod5-file-format.md index 0b4d69ff0d..4dfa82de3d 100644 --- a/docs/version-specific/supported-software/p/pod5-file-format.md +++ b/docs/version-specific/supported-software/p/pod5-file-format.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.1.8`` | ``foss/2022a`` ``0.3.10`` | ``foss/2023a`` +``0.3.23`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/polymake.md b/docs/version-specific/supported-software/p/polymake.md index 14aeb63634..eab87ad2e3 100644 --- a/docs/version-specific/supported-software/p/polymake.md +++ b/docs/version-specific/supported-software/p/polymake.md @@ -11,7 +11,6 @@ polymake is open source software for research in polyhedral geometry. It deals w version | toolchain --------|---------- ``4.10`` | ``foss/2022b`` -``4.8`` | ``foss/2021b`` ``4.8`` | ``gfbf/2022a`` diff --git a/docs/version-specific/supported-software/p/poppler.md b/docs/version-specific/supported-software/p/poppler.md index d48c567a42..50eed277a1 100644 --- a/docs/version-specific/supported-software/p/poppler.md +++ b/docs/version-specific/supported-software/p/poppler.md @@ -10,7 +10,6 @@ Poppler is a PDF rendering library version | toolchain --------|---------- -``22.01.0`` | ``GCC/11.2.0`` ``22.12.0`` | ``GCC/11.3.0`` ``23.09.0`` | ``GCC/12.3.0`` ``24.04.0`` | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/p/popt.md b/docs/version-specific/supported-software/p/popt.md index ecab799d80..ccecf7592b 100644 --- a/docs/version-specific/supported-software/p/popt.md +++ b/docs/version-specific/supported-software/p/popt.md @@ -6,11 +6,10 @@ search: Popt is a C library for parsing command line parameters. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.18`` | ``system`` ``1.19`` | ``GCCcore/13.3.0`` ``1.19`` | ``GCCcore/14.2.0`` ``1.19`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/p/preseq.md b/docs/version-specific/supported-software/p/preseq.md index 69fbaf2d6f..bed75b1633 100644 --- a/docs/version-specific/supported-software/p/preseq.md +++ b/docs/version-specific/supported-software/p/preseq.md @@ -10,7 +10,6 @@ Software for predicting library complexity and genome coverage in high-throughpu version | toolchain --------|---------- -``3.1.2`` | ``GCC/11.2.0`` ``3.2.0`` | ``GCC/11.3.0`` ``3.2.0`` | ``GCC/12.2.0`` ``3.2.0`` | ``GCC/14.3.0`` diff --git a/docs/version-specific/supported-software/p/presto.md b/docs/version-specific/supported-software/p/presto.md index 05f91ced2a..a2a448efd7 100644 --- a/docs/version-specific/supported-software/p/presto.md +++ b/docs/version-specific/supported-software/p/presto.md @@ -10,7 +10,6 @@ Presto performs a fast Wilcoxon rank sum test and auROC analysis. version | versionsuffix | toolchain --------|---------------|---------- -``1.0.0-20200718`` | ``-R-4.1.2`` | ``foss/2021b`` ``1.0.0-20230113`` | ``-R-4.2.1`` | ``foss/2022a`` ``1.0.0-20230501`` | ``-R-4.2.2`` | ``foss/2022b`` ``1.0.0-20230501`` | ``-R-4.3.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/prodigal.md b/docs/version-specific/supported-software/p/prodigal.md index 44721630db..e7da21d146 100644 --- a/docs/version-specific/supported-software/p/prodigal.md +++ b/docs/version-specific/supported-software/p/prodigal.md @@ -10,7 +10,6 @@ Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbi version | toolchain --------|---------- -``2.6.3`` | ``GCCcore/11.2.0`` ``2.6.3`` | ``GCCcore/11.3.0`` ``2.6.3`` | ``GCCcore/12.2.0`` ``2.6.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/prokka.md b/docs/version-specific/supported-software/p/prokka.md index 07536d1857..1c72d7d87f 100644 --- a/docs/version-specific/supported-software/p/prokka.md +++ b/docs/version-specific/supported-software/p/prokka.md @@ -10,11 +10,12 @@ Prokka is a software tool for the rapid annotation of prokaryotic genomes. version | toolchain --------|---------- -``1.14.5`` | ``gompi/2021b`` ``1.14.5`` | ``gompi/2022a`` ``1.14.5`` | ``gompi/2022b`` ``1.14.5`` | ``gompi/2023a`` ``1.14.5`` | ``gompi/2023b`` +``1.15.6`` | ``gompi/2024a`` +``1.15.6`` | ``gompi/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/prompt-toolkit.md b/docs/version-specific/supported-software/p/prompt-toolkit.md index 5f872f5e77..8d265d03aa 100644 --- a/docs/version-specific/supported-software/p/prompt-toolkit.md +++ b/docs/version-specific/supported-software/p/prompt-toolkit.md @@ -14,6 +14,8 @@ version | toolchain ``3.0.36`` | ``GCCcore/12.3.0`` ``3.0.36`` | ``GCCcore/13.2.0`` ``3.0.36`` | ``GCCcore/13.3.0`` +``3.0.52`` | ``GCCcore/14.2.0`` +``3.0.52`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/protobuf-python.md b/docs/version-specific/supported-software/p/protobuf-python.md index 46efdcdddb..33593e4b23 100644 --- a/docs/version-specific/supported-software/p/protobuf-python.md +++ b/docs/version-specific/supported-software/p/protobuf-python.md @@ -10,7 +10,6 @@ Python Protocol Buffers runtime library. version | toolchain --------|---------- -``3.17.3`` | ``GCCcore/11.2.0`` ``3.19.4`` | ``GCCcore/11.3.0`` ``4.23.0`` | ``GCCcore/12.2.0`` ``4.24.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/protobuf.md b/docs/version-specific/supported-software/p/protobuf.md index 53406493dc..ac2a3fcdf9 100644 --- a/docs/version-specific/supported-software/p/protobuf.md +++ b/docs/version-specific/supported-software/p/protobuf.md @@ -14,7 +14,6 @@ version | toolchain ``24.0`` | ``GCCcore/12.3.0`` ``25.3`` | ``GCCcore/13.2.0`` ``28.0`` | ``GCCcore/13.3.0`` -``3.17.3`` | ``GCCcore/11.2.0`` ``3.19.4`` | ``GCCcore/11.3.0`` ``31.1`` | ``GCCcore/14.2.0`` ``31.1`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/p/psutil.md b/docs/version-specific/supported-software/p/psutil.md index e35c5328d1..9ed243e7b4 100644 --- a/docs/version-specific/supported-software/p/psutil.md +++ b/docs/version-specific/supported-software/p/psutil.md @@ -11,13 +11,13 @@ A cross-platform process and system utilities module for Python version | toolchain --------|---------- ``5.9.3`` | ``GCCcore/11.3.0`` -``5.9.4`` | ``GCCcore/11.2.0`` ``5.9.5`` | ``GCCcore/12.2.0`` ``5.9.8`` | ``GCCcore/12.3.0`` ``6.0.0`` | ``GCCcore/13.3.0`` ``6.1.0`` | ``GCCcore/13.2.0`` ``7.0.0`` | ``GCCcore/14.2.0`` ``7.0.0`` | ``GCCcore/14.3.0`` +``7.2.1`` | ``GCCcore/15.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/psycopg2.md b/docs/version-specific/supported-software/p/psycopg2.md index 10a4b46610..7250a7c1c4 100644 --- a/docs/version-specific/supported-software/p/psycopg2.md +++ b/docs/version-specific/supported-software/p/psycopg2.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``2.9.10`` | ``GCCcore/13.2.0`` ``2.9.10`` | ``GCCcore/13.3.0`` -``2.9.5`` | ``GCCcore/11.2.0`` ``2.9.6`` | ``GCCcore/11.3.0`` ``2.9.9`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/pugixml.md b/docs/version-specific/supported-software/p/pugixml.md index a63dea36c2..5452398e1c 100644 --- a/docs/version-specific/supported-software/p/pugixml.md +++ b/docs/version-specific/supported-software/p/pugixml.md @@ -10,7 +10,6 @@ pugixml is a light-weight C++ XML processing library version | toolchain --------|---------- -``1.12.1`` | ``GCCcore/11.2.0`` ``1.12.1`` | ``GCCcore/11.3.0`` ``1.14`` | ``GCCcore/12.3.0`` ``1.14`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/p/pullseq.md b/docs/version-specific/supported-software/p/pullseq.md index 89c2649f23..e6d91daed5 100644 --- a/docs/version-specific/supported-software/p/pullseq.md +++ b/docs/version-specific/supported-software/p/pullseq.md @@ -10,7 +10,6 @@ Utility program for extracting sequences from a fasta/fastq file version | toolchain --------|---------- -``1.0.2`` | ``GCCcore/11.2.0`` ``1.0.2`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/p/purge_dups.md b/docs/version-specific/supported-software/p/purge_dups.md index 8c3445abc0..06aa3dd726 100644 --- a/docs/version-specific/supported-software/p/purge_dups.md +++ b/docs/version-specific/supported-software/p/purge_dups.md @@ -10,7 +10,6 @@ purge haplotigs and overlaps in an assembly based on read depth version | toolchain --------|---------- -``1.2.5`` | ``foss/2021b`` ``1.2.6`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/p/py-cpuinfo.md b/docs/version-specific/supported-software/p/py-cpuinfo.md index a2cba3aa05..c71054f97b 100644 --- a/docs/version-specific/supported-software/p/py-cpuinfo.md +++ b/docs/version-specific/supported-software/p/py-cpuinfo.md @@ -4,14 +4,12 @@ search: --- # py-cpuinfo -Py-cpuinfo gets CPU info with pure Python. Py-cpuinfo should work without any extra programs or libraries, beyond what your OS provides. It does not require any compilation(C/C++, assembly, et cetera) to use. It works with Python 3. +py-cpuinfo gets CPU info with pure Python. *homepage*: version | toolchain --------|---------- -``8.0.0`` | ``GCCcore/11.2.0`` -``9.0.0`` | ``GCCcore/11.2.0`` ``9.0.0`` | ``GCCcore/11.3.0`` ``9.0.0`` | ``GCCcore/12.2.0`` ``9.0.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/pyBigWig.md b/docs/version-specific/supported-software/p/pyBigWig.md index 69fc635424..e1927a1408 100644 --- a/docs/version-specific/supported-software/p/pyBigWig.md +++ b/docs/version-specific/supported-software/p/pyBigWig.md @@ -10,12 +10,12 @@ A python extension, written in C, for quick access to bigBed files and access t version | toolchain --------|---------- -``0.3.18`` | ``foss/2021b`` ``0.3.18`` | ``foss/2022a`` ``0.3.22`` | ``foss/2022b`` ``0.3.22`` | ``gfbf/2023a`` ``0.3.23`` | ``gfbf/2023b`` ``0.3.24`` | ``gfbf/2024a`` +``0.3.25`` | ``gfbf/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyEGA3.md b/docs/version-specific/supported-software/p/pyEGA3.md index 02f1a9c3aa..920a447064 100644 --- a/docs/version-specific/supported-software/p/pyEGA3.md +++ b/docs/version-specific/supported-software/p/pyEGA3.md @@ -10,7 +10,6 @@ A basic Python-based EGA download client version | toolchain --------|---------- -``4.0.0`` | ``GCCcore/11.2.0`` ``5.0.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/pyFAI.md b/docs/version-specific/supported-software/p/pyFAI.md deleted file mode 100644 index f1cf72a8bf..0000000000 --- a/docs/version-specific/supported-software/p/pyFAI.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pyFAI - -Python implementation of fast azimuthal integration. - -*homepage*: - -version | toolchain ---------|---------- -``0.21.3`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pyGenomeTracks.md b/docs/version-specific/supported-software/p/pyGenomeTracks.md index 174a261766..2b1b39de30 100644 --- a/docs/version-specific/supported-software/p/pyGenomeTracks.md +++ b/docs/version-specific/supported-software/p/pyGenomeTracks.md @@ -10,7 +10,6 @@ pyGenomeTracks aims to produce high-quality genome browser tracks that are highl version | toolchain --------|---------- -``3.7`` | ``foss/2021b`` ``3.8`` | ``foss/2022a`` ``3.9`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/pyNVML.md b/docs/version-specific/supported-software/p/pyNVML.md new file mode 100644 index 0000000000..8d6045fa46 --- /dev/null +++ b/docs/version-specific/supported-software/p/pyNVML.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# pyNVML + +Provides a Python interface to GPU management and monitoring functions. This is a wrapper around the NVML library. + +*homepage*: + +version | toolchain +--------|---------- +``13.590.48`` | ``GCCcore/14.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/pySCENIC.md b/docs/version-specific/supported-software/p/pySCENIC.md index a969819748..3486c4bf6c 100644 --- a/docs/version-specific/supported-software/p/pySCENIC.md +++ b/docs/version-specific/supported-software/p/pySCENIC.md @@ -11,6 +11,7 @@ pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Singl version | toolchain --------|---------- ``0.12.1-20240311`` | ``foss/2023a`` +``0.12.1-20250109`` | ``foss/2024a`` ``0.12.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/p/pybedtools.md b/docs/version-specific/supported-software/p/pybedtools.md index 1851bbe06e..ebd3893fd3 100644 --- a/docs/version-specific/supported-software/p/pybedtools.md +++ b/docs/version-specific/supported-software/p/pybedtools.md @@ -8,15 +8,14 @@ pybedtools wraps and extends BEDTools and offers feature-level manipulations fro *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.10.0`` | | ``foss/2023b`` -``0.12.0`` | | ``foss/2025a`` -``0.8.2`` | ``-Python-2.7.18`` | ``GCC/11.2.0`` -``0.8.2`` | | ``GCC/11.2.0`` -``0.9.0`` | | ``GCC/11.3.0`` -``0.9.0`` | | ``GCC/12.2.0`` -``0.9.1`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.10.0`` | ``foss/2023b`` +``0.12.0`` | ``foss/2024a`` +``0.12.0`` | ``foss/2025a`` +``0.9.0`` | ``GCC/11.3.0`` +``0.9.0`` | ``GCC/12.2.0`` +``0.9.1`` | ``foss/2023a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pybind11-stubgen.md b/docs/version-specific/supported-software/p/pybind11-stubgen.md index 86434469b0..f4894f04d3 100644 --- a/docs/version-specific/supported-software/p/pybind11-stubgen.md +++ b/docs/version-specific/supported-software/p/pybind11-stubgen.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2.5.1`` | ``GCCcore/12.3.0`` ``2.5.4`` | ``GCCcore/13.3.0`` +``2.5.5`` | ``GCCcore/14.2.0`` ``2.5.5`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/p/pybind11.md b/docs/version-specific/supported-software/p/pybind11.md index f6a1e60821..8051cc5dea 100644 --- a/docs/version-specific/supported-software/p/pybind11.md +++ b/docs/version-specific/supported-software/p/pybind11.md @@ -18,8 +18,6 @@ version | versionsuffix | toolchain ``2.12.0`` | | ``intel-compilers/2024.2.0`` ``2.13.6`` | | ``GCC/13.3.0`` ``2.13.6`` | | ``GCC/14.2.0`` -``2.7.1`` | ``-Python-2.7.18`` | ``GCCcore/11.2.0`` -``2.7.1`` | | ``GCCcore/11.2.0`` ``2.9.2`` | | ``GCCcore/11.3.0`` ``2.9.2`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` ``3.0.0`` | | ``GCC/14.3.0`` diff --git a/docs/version-specific/supported-software/p/pycocotools.md b/docs/version-specific/supported-software/p/pycocotools.md index b854736f88..64c401ab81 100644 --- a/docs/version-specific/supported-software/p/pycocotools.md +++ b/docs/version-specific/supported-software/p/pycocotools.md @@ -10,6 +10,7 @@ Official APIs for the MS-COCO dataset version | toolchain --------|---------- +``2.0.11`` | ``foss/2025a`` ``2.0.6`` | ``foss/2022a`` ``2.0.7`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/pydantic.md b/docs/version-specific/supported-software/p/pydantic.md index 0db5f30e45..f11af77ebf 100644 --- a/docs/version-specific/supported-software/p/pydantic.md +++ b/docs/version-specific/supported-software/p/pydantic.md @@ -11,7 +11,6 @@ Data validation and settings management using Python type hinting. version | toolchain --------|---------- ``1.10.13`` | ``GCCcore/12.3.0`` -``1.10.2`` | ``GCCcore/11.2.0`` ``1.10.4`` | ``GCCcore/11.3.0`` ``2.11.7`` | ``GCCcore/14.2.0`` ``2.11.9`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/p/pydicom.md b/docs/version-specific/supported-software/p/pydicom.md index fba2e5c2a8..f1647413a5 100644 --- a/docs/version-specific/supported-software/p/pydicom.md +++ b/docs/version-specific/supported-software/p/pydicom.md @@ -10,12 +10,12 @@ Pure python package for DICOM medical file reading and writing. version | toolchain --------|---------- -``2.2.2`` | ``GCCcore/11.2.0`` ``2.3.0`` | ``GCCcore/11.3.0`` ``2.4.4`` | ``GCCcore/12.2.0`` ``2.4.4`` | ``GCCcore/12.3.0`` ``3.0.1`` | ``GCCcore/13.2.0`` ``3.0.1`` | ``GCCcore/13.3.0`` +``3.0.1`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pydot.md b/docs/version-specific/supported-software/p/pydot.md index 52e40e61f7..1603cfa9f7 100644 --- a/docs/version-specific/supported-software/p/pydot.md +++ b/docs/version-specific/supported-software/p/pydot.md @@ -10,13 +10,13 @@ Python interface to Graphviz's Dot language. version | toolchain --------|---------- -``1.4.2`` | ``GCCcore/11.2.0`` ``1.4.2`` | ``GCCcore/11.3.0`` ``2.0.0`` | ``GCCcore/12.2.0`` ``2.0.0`` | ``GCCcore/12.3.0`` ``2.0.0`` | ``GCCcore/13.2.0`` ``3.0.3`` | ``GCCcore/13.3.0`` ``3.0.4`` | ``GCCcore/13.2.0`` +``4.0.1`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyfaidx.md b/docs/version-specific/supported-software/p/pyfaidx.md index 0d3acef707..9965589a41 100644 --- a/docs/version-specific/supported-software/p/pyfaidx.md +++ b/docs/version-specific/supported-software/p/pyfaidx.md @@ -10,13 +10,13 @@ pyfaidx: efficient pythonic random access to fasta subsequences version | versionsuffix | toolchain --------|---------------|---------- -``0.7.0`` | | ``GCCcore/11.2.0`` ``0.7.1`` | | ``GCCcore/11.3.0`` ``0.7.1`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` ``0.7.2.1`` | | ``GCCcore/12.2.0`` ``0.8.1.1`` | | ``GCCcore/12.3.0`` ``0.8.1.1`` | | ``GCCcore/13.2.0`` ``0.8.1.2`` | | ``GCCcore/13.3.0`` +``0.9.0.3`` | | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pygmo.md b/docs/version-specific/supported-software/p/pygmo.md index efc1d4ba63..c60e78f6ed 100644 --- a/docs/version-specific/supported-software/p/pygmo.md +++ b/docs/version-specific/supported-software/p/pygmo.md @@ -10,7 +10,6 @@ pygmo is a scientific Python library for massively parallel optimization. version | toolchain --------|---------- -``2.18.0`` | ``foss/2021b`` ``2.18.0`` | ``foss/2022a`` ``2.19.5`` | ``gfbf/2022b`` ``2.19.5`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/p/pyiron.md b/docs/version-specific/supported-software/p/pyiron.md index 3b9b21c7e0..c078f49765 100644 --- a/docs/version-specific/supported-software/p/pyiron.md +++ b/docs/version-specific/supported-software/p/pyiron.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``0.5.1`` | ``foss/2023a`` ``0.5.2-20250921`` | ``foss/2024a`` -``0.5.2-20251013`` | ``foss/2024a`` ``0.5.2-20251013`` | ``foss/2025b`` ``0.5.2`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/p/pylipid.md b/docs/version-specific/supported-software/p/pylipid.md deleted file mode 100644 index 38d328a00f..0000000000 --- a/docs/version-specific/supported-software/p/pylipid.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pylipid - -PyLipID is a python package for analyzing lipid interactions with membrane proteins from Molecular Dynamics Simulations. - -*homepage*: - -version | toolchain ---------|---------- -``1.5.14`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pyobjcryst.md b/docs/version-specific/supported-software/p/pyobjcryst.md deleted file mode 100644 index ebfa39d198..0000000000 --- a/docs/version-specific/supported-software/p/pyobjcryst.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# pyobjcryst - -Python bindings to ObjCryst++, the Object-Oriented Crystallographic Library. - -*homepage*: - -version | toolchain ---------|---------- -``2.2.1`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/p/pyperf.md b/docs/version-specific/supported-software/p/pyperf.md index 1d84335f76..b726813d4e 100644 --- a/docs/version-specific/supported-software/p/pyperf.md +++ b/docs/version-specific/supported-software/p/pyperf.md @@ -10,6 +10,7 @@ The Python pyperf module is a toolkit to write, run and analyze benchmarks version | toolchain --------|---------- +``2.10.0`` | ``GCCcore/13.3.0`` ``2.5.0`` | ``GCCcore/11.3.0`` ``2.6.0`` | ``GCCcore/12.2.0`` ``2.7.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/p/pyproj.md b/docs/version-specific/supported-software/p/pyproj.md index 8bb725b41d..5b1c82b111 100644 --- a/docs/version-specific/supported-software/p/pyproj.md +++ b/docs/version-specific/supported-software/p/pyproj.md @@ -10,7 +10,6 @@ Python interface to PROJ4 library for cartographic transformations version | toolchain --------|---------- -``3.3.1`` | ``GCCcore/11.2.0`` ``3.3.1`` | ``GCCcore/11.3.0`` ``3.4.0`` | ``GCCcore/11.3.0`` ``3.5.0`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/p/pyrho.md b/docs/version-specific/supported-software/p/pyrho.md new file mode 100644 index 0000000000..072e067e72 --- /dev/null +++ b/docs/version-specific/supported-software/p/pyrho.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# pyrho + +Fast demography-aware inference of fine-scale recombination rates based on fused-LASSO. + +*homepage*: + +version | toolchain +--------|---------- +``0.2.1`` | ``foss/2025a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/pyseer.md b/docs/version-specific/supported-software/p/pyseer.md index dbf072a9bd..d6434ed35e 100644 --- a/docs/version-specific/supported-software/p/pyseer.md +++ b/docs/version-specific/supported-software/p/pyseer.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.3.11`` | ``foss/2022b`` ``1.3.12`` | ``foss/2023a`` +``1.4.0`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pyslim.md b/docs/version-specific/supported-software/p/pyslim.md index 4788b46b48..720bfdca34 100644 --- a/docs/version-specific/supported-software/p/pyslim.md +++ b/docs/version-specific/supported-software/p/pyslim.md @@ -10,7 +10,6 @@ A Python API for reading and modifying tskit tree sequence files produced by SLi version | toolchain --------|---------- -``1.0.1`` | ``foss/2021b`` ``1.0.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/p/pyspoa.md b/docs/version-specific/supported-software/p/pyspoa.md index c355b6fc52..138e6be4d8 100644 --- a/docs/version-specific/supported-software/p/pyspoa.md +++ b/docs/version-specific/supported-software/p/pyspoa.md @@ -10,7 +10,6 @@ Python bindings to spoa. version | toolchain --------|---------- -``0.0.8`` | ``GCC/11.2.0`` ``0.0.9`` | ``GCC/11.3.0`` ``0.0.9`` | ``GCC/12.2.0`` ``0.2.1`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/p/pyteomics.md b/docs/version-specific/supported-software/p/pyteomics.md new file mode 100644 index 0000000000..b75a87f942 --- /dev/null +++ b/docs/version-specific/supported-software/p/pyteomics.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# pyteomics + +Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis. + +*homepage*: + +version | toolchain +--------|---------- +``4.7.5`` | ``foss/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/pytest-forked.md b/docs/version-specific/supported-software/p/pytest-forked.md new file mode 100644 index 0000000000..38c889d567 --- /dev/null +++ b/docs/version-specific/supported-software/p/pytest-forked.md @@ -0,0 +1,19 @@ +--- +search: + boost: 0.5 +--- +# pytest-forked + +Run tests in isolated forked subprocesses. + +*homepage*: + +version | toolchain +--------|---------- +``1.6.0`` | ``GCCcore/13.3.0`` +``1.6.0`` | ``GCCcore/14.2.0`` +``1.6.0`` | ``GCCcore/14.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/pytest-xdist.md b/docs/version-specific/supported-software/p/pytest-xdist.md index 6edf7e3e84..916a5f4d93 100644 --- a/docs/version-specific/supported-software/p/pytest-xdist.md +++ b/docs/version-specific/supported-software/p/pytest-xdist.md @@ -10,7 +10,6 @@ xdist: pytest distributed testing plugin The pytest-xdist plugin extends pytest version | toolchain --------|---------- -``2.5.0`` | ``GCCcore/11.2.0`` ``2.5.0`` | ``GCCcore/11.3.0`` ``3.3.1`` | ``GCCcore/12.3.0`` ``3.6.1`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/p/pytest.md b/docs/version-specific/supported-software/p/pytest.md index c6fc818d40..95267047d5 100644 --- a/docs/version-specific/supported-software/p/pytest.md +++ b/docs/version-specific/supported-software/p/pytest.md @@ -11,8 +11,6 @@ pytest: simple powerful testing with Python version | versionsuffix | toolchain --------|---------------|---------- ``4.6.11`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` -``7.1.3`` | | ``GCCcore/11.2.0`` -``7.2.2`` | | ``GCCcore/11.2.0`` ``7.4.2`` | | ``GCCcore/12.3.0`` ``8.2.2`` | | ``GCCcore/13.2.0`` ``8.3.3`` | | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/p/python-bidi.md b/docs/version-specific/supported-software/p/python-bidi.md new file mode 100644 index 0000000000..8515ae7902 --- /dev/null +++ b/docs/version-specific/supported-software/p/python-bidi.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# python-bidi + +Bi-directional (BiDi) layout for Python providing 2 implementations: - V5 of the algorithm implemented with Python. - Wrapper the unicode-bidi Rust crate. + +*homepage*: + +version | toolchain +--------|---------- +``0.6.0`` | ``GCCcore/12.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/python-docx.md b/docs/version-specific/supported-software/p/python-docx.md index c3a1141333..2d1f7cf5d9 100644 --- a/docs/version-specific/supported-software/p/python-docx.md +++ b/docs/version-specific/supported-software/p/python-docx.md @@ -13,6 +13,7 @@ version | toolchain ``0.8.11`` | ``GCCcore/12.2.0`` ``1.0.1`` | ``GCCcore/12.3.0`` ``1.1.0`` | ``GCCcore/13.2.0`` +``1.2.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/python-igraph.md b/docs/version-specific/supported-software/p/python-igraph.md index 9355f243fa..b92f73992e 100644 --- a/docs/version-specific/supported-software/p/python-igraph.md +++ b/docs/version-specific/supported-software/p/python-igraph.md @@ -16,7 +16,7 @@ version | toolchain ``0.11.5`` | ``foss/2023b`` ``0.11.9`` | ``foss/2024a`` ``0.11.9`` | ``foss/2025a`` -``0.9.8`` | ``foss/2021b`` +``1.0.0`` | ``foss/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/python-irodsclient.md b/docs/version-specific/supported-software/p/python-irodsclient.md index 4b5e3e7557..a07707f225 100644 --- a/docs/version-specific/supported-software/p/python-irodsclient.md +++ b/docs/version-specific/supported-software/p/python-irodsclient.md @@ -10,8 +10,9 @@ A python API for iRODS version | toolchain --------|---------- -``1.1.4`` | ``GCCcore/11.2.0`` ``2.0.0`` | ``GCCcore/12.3.0`` +``3.2.0`` | ``GCCcore/13.3.0`` +``3.2.0`` | ``GCCcore/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/python-isal.md b/docs/version-specific/supported-software/p/python-isal.md index 1f869dcc1b..42d703ed35 100644 --- a/docs/version-specific/supported-software/p/python-isal.md +++ b/docs/version-specific/supported-software/p/python-isal.md @@ -10,13 +10,14 @@ Faster zlib and gzip compatible compression and decompression by providing pyth version | toolchain --------|---------- -``0.11.1`` | ``GCCcore/11.2.0`` ``1.1.0`` | ``GCCcore/11.3.0`` ``1.1.0`` | ``GCCcore/12.2.0`` ``1.1.0`` | ``GCCcore/12.3.0`` ``1.6.1`` | ``GCCcore/12.3.0`` ``1.6.1`` | ``GCCcore/13.2.0`` ``1.7.0`` | ``GCCcore/13.3.0`` +``1.7.0`` | ``GCCcore/14.3.0`` +``1.8.0`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/python-libsbml.md b/docs/version-specific/supported-software/p/python-libsbml.md index d58c948c28..aab0c1031d 100644 --- a/docs/version-specific/supported-software/p/python-libsbml.md +++ b/docs/version-specific/supported-software/p/python-libsbml.md @@ -10,8 +10,8 @@ LibSBML Python API. version | toolchain --------|---------- -``5.20.2`` | ``foss/2021b`` ``5.20.2`` | ``foss/2023b`` +``5.21.0`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/python-louvain.md b/docs/version-specific/supported-software/p/python-louvain.md index cbf5f83673..74b601bc93 100644 --- a/docs/version-specific/supported-software/p/python-louvain.md +++ b/docs/version-specific/supported-software/p/python-louvain.md @@ -10,10 +10,10 @@ Louvain algorithm for community detection version | toolchain --------|---------- -``0.15`` | ``foss/2021b`` ``0.16`` | ``foss/2022a`` ``0.16`` | ``foss/2022b`` ``0.16`` | ``foss/2023a`` +``0.16`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/python-parasail.md b/docs/version-specific/supported-software/p/python-parasail.md index 4373dddbf1..2033aac768 100644 --- a/docs/version-specific/supported-software/p/python-parasail.md +++ b/docs/version-specific/supported-software/p/python-parasail.md @@ -10,7 +10,6 @@ Python Bindings for the Parasail C Library version | toolchain --------|---------- -``1.2.4`` | ``foss/2021b`` ``1.3.3`` | ``foss/2022a`` ``1.3.4`` | ``foss/2022b`` ``1.3.4`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/p/python-xxhash.md b/docs/version-specific/supported-software/p/python-xxhash.md index 02a72c4cd0..c97223dfcc 100644 --- a/docs/version-specific/supported-software/p/python-xxhash.md +++ b/docs/version-specific/supported-software/p/python-xxhash.md @@ -16,6 +16,7 @@ version | toolchain ``3.4.1`` | ``GCCcore/13.2.0`` ``3.5.0`` | ``GCCcore/13.3.0`` ``3.6.0`` | ``GCCcore/14.2.0`` +``3.6.0`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/p/pytmatrix.md b/docs/version-specific/supported-software/p/pytmatrix.md new file mode 100644 index 0000000000..e9e9e64752 --- /dev/null +++ b/docs/version-specific/supported-software/p/pytmatrix.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# pytmatrix + +Python code for T-matrix scattering calculations. + +*homepage*: + +version | toolchain +--------|---------- +``0.3.3`` | ``gfbf/2023a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/p/pyvips.md b/docs/version-specific/supported-software/p/pyvips.md index 8e679020aa..b0d7202a79 100644 --- a/docs/version-specific/supported-software/p/pyvips.md +++ b/docs/version-specific/supported-software/p/pyvips.md @@ -11,6 +11,7 @@ This module wraps the libvips image processing library. libvips is a demand-driv version | toolchain --------|---------- ``2.2.3`` | ``GCC/12.3.0`` +``2.2.3`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/QCA.md b/docs/version-specific/supported-software/q/QCA.md index fe858b15c3..95b09e0def 100644 --- a/docs/version-specific/supported-software/q/QCA.md +++ b/docs/version-specific/supported-software/q/QCA.md @@ -10,7 +10,6 @@ Taking a hint from the similarly-named Java Cryptography Architecture, QCA aims version | toolchain --------|---------- -``2.3.5`` | ``GCCcore/11.2.0`` ``2.3.9`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/q/QGIS.md b/docs/version-specific/supported-software/q/QGIS.md index ecfcef9e0b..fadd1cbcdf 100644 --- a/docs/version-specific/supported-software/q/QGIS.md +++ b/docs/version-specific/supported-software/q/QGIS.md @@ -4,13 +4,12 @@ search: --- # QGIS -QGIS is a user friendly Open Source Geographic Information System (GIS) +QGIS is a user friendly Open Source Geographic Information System (GIS). *homepage*: version | toolchain --------|---------- -``3.28.1`` | ``foss/2021b`` ``3.40.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/q/QScintilla.md b/docs/version-specific/supported-software/q/QScintilla.md index ea42440f1b..68dfda5f16 100644 --- a/docs/version-specific/supported-software/q/QScintilla.md +++ b/docs/version-specific/supported-software/q/QScintilla.md @@ -10,9 +10,9 @@ QScintilla is a port to Qt of Neil Hodgson's Scintilla C++ editor control version | toolchain --------|---------- -``2.11.6`` | ``GCCcore/11.2.0`` ``2.14.1`` | ``GCCcore/12.3.0`` ``2.14.1`` | ``GCCcore/14.2.0`` +``2.14.1`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/QUAST.md b/docs/version-specific/supported-software/q/QUAST.md index fba77dc1aa..d494b52726 100644 --- a/docs/version-specific/supported-software/q/QUAST.md +++ b/docs/version-specific/supported-software/q/QUAST.md @@ -10,11 +10,11 @@ QUAST evaluates genome assemblies by computing various metrics. It works both wi version | versionsuffix | toolchain --------|---------------|---------- -``5.0.2`` | | ``foss/2021b`` ``5.2.0`` | | ``foss/2022a`` ``5.2.0`` | ``-Python-2.7.18`` | ``foss/2023a`` ``5.2.0`` | | ``gfbf/2023a`` ``5.2.0`` | | ``gfbf/2023b`` +``5.3.0`` | | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/q/Qhull.md b/docs/version-specific/supported-software/q/Qhull.md index 1e027a1c55..941249bfab 100644 --- a/docs/version-specific/supported-software/q/Qhull.md +++ b/docs/version-specific/supported-software/q/Qhull.md @@ -10,7 +10,6 @@ Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfsp version | toolchain --------|---------- -``2020.2`` | ``GCCcore/11.2.0`` ``2020.2`` | ``GCCcore/11.3.0`` ``2020.2`` | ``GCCcore/12.2.0`` ``2020.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/q/Qt5.md b/docs/version-specific/supported-software/q/Qt5.md index 7885d8db9c..cbee34af53 100644 --- a/docs/version-specific/supported-software/q/Qt5.md +++ b/docs/version-specific/supported-software/q/Qt5.md @@ -13,7 +13,6 @@ version | toolchain ``5.15.10`` | ``GCCcore/12.3.0`` ``5.15.13`` | ``GCCcore/13.2.0`` ``5.15.16`` | ``GCCcore/13.3.0`` -``5.15.2`` | ``GCCcore/11.2.0`` ``5.15.5`` | ``GCCcore/11.3.0`` ``5.15.7`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/q/Qt5Webkit.md b/docs/version-specific/supported-software/q/Qt5Webkit.md index 29adc810dc..8d829d70ba 100644 --- a/docs/version-specific/supported-software/q/Qt5Webkit.md +++ b/docs/version-specific/supported-software/q/Qt5Webkit.md @@ -10,7 +10,6 @@ Qt Port of WebKit. WebKit is an open source web browser engine. version | toolchain --------|---------- -``5.212.0-alpha4`` | ``GCCcore/11.2.0`` ``5.212.0-alpha4`` | ``GCCcore/11.3.0`` ``5.212.0-alpha4`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/q/QtKeychain.md b/docs/version-specific/supported-software/q/QtKeychain.md index b3e418ef56..3283559cba 100644 --- a/docs/version-specific/supported-software/q/QtKeychain.md +++ b/docs/version-specific/supported-software/q/QtKeychain.md @@ -10,7 +10,6 @@ Platform-independent Qt API for storing passwords securely. version | toolchain --------|---------- -``0.13.2`` | ``GCCcore/11.2.0`` ``0.14.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/q/QtPy.md b/docs/version-specific/supported-software/q/QtPy.md index 4483288663..743f256323 100644 --- a/docs/version-specific/supported-software/q/QtPy.md +++ b/docs/version-specific/supported-software/q/QtPy.md @@ -4,16 +4,16 @@ search: --- # QtPy -QtPy is a small abstraction layer that lets you write applications using a single API call to either PyQt or PySide. It provides support for PyQt5, PyQt4, PySide2 and PySide. +QtPy is a small abstraction layer that lets you write applications using a single API call to either PyQt or PySide. It provides support for PyQt5, PyQt4, PySide2 and PySide. *homepage*: version | toolchain --------|---------- -``2.2.1`` | ``GCCcore/11.2.0`` ``2.3.0`` | ``GCCcore/11.3.0`` ``2.4.1`` | ``GCCcore/12.3.0`` ``2.4.1`` | ``GCCcore/13.2.0`` +``2.4.3`` | ``GCCcore/13.3.0`` ``2.4.3`` | ``GCCcore/14.2.0`` ``2.4.3`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/q/Qtconsole.md b/docs/version-specific/supported-software/q/Qtconsole.md index 69bbf71836..416b9b0646 100644 --- a/docs/version-specific/supported-software/q/Qtconsole.md +++ b/docs/version-specific/supported-software/q/Qtconsole.md @@ -10,10 +10,10 @@ A rich Qt-based console for working with Jupyter kernels, supporting rich media version | toolchain --------|---------- -``5.3.2`` | ``GCCcore/11.2.0`` ``5.4.0`` | ``GCCcore/11.3.0`` ``5.5.1`` | ``GCCcore/12.3.0`` ``5.6.0`` | ``GCCcore/13.2.0`` +``5.6.0`` | ``GCCcore/13.3.0`` ``5.7.0`` | ``GCCcore/14.2.0`` ``5.7.0`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/q/Qualimap.md b/docs/version-specific/supported-software/q/Qualimap.md index 7616001389..d10f011778 100644 --- a/docs/version-specific/supported-software/q/Qualimap.md +++ b/docs/version-specific/supported-software/q/Qualimap.md @@ -4,13 +4,12 @@ search: --- # Qualimap -Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Interface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. +Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``2.2.1`` | ``-R-4.1.2`` | ``foss/2021b`` ``2.3`` | ``-R-4.2.2`` | ``foss/2022b`` ``2.3`` | ``-R-4.4.2`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/q/QuantumESPRESSO.md b/docs/version-specific/supported-software/q/QuantumESPRESSO.md index 146d83f962..88be779e47 100644 --- a/docs/version-specific/supported-software/q/QuantumESPRESSO.md +++ b/docs/version-specific/supported-software/q/QuantumESPRESSO.md @@ -10,9 +10,6 @@ Quantum ESPRESSO is an integrated suite of computer codes for electronic-struct version | versionsuffix | toolchain --------|---------------|---------- -``6.8`` | | ``foss/2021b`` -``7.0`` | | ``foss/2021b`` -``7.0`` | | ``intel/2021b`` ``7.1`` | | ``foss/2022a`` ``7.1`` | | ``intel/2022a`` ``7.2`` | | ``foss/2022b`` @@ -25,6 +22,7 @@ version | versionsuffix | toolchain ``7.3.1`` | | ``intel/2023a`` ``7.4`` | ``-minimal`` | ``foss/2024a`` ``7.4`` | | ``foss/2024a`` +``7.5`` | | ``NVHPC/25.3-CUDA-12.8.0`` ``7.5`` | | ``foss/2025a`` ``7.5`` | | ``foss/2025b`` ``7.5`` | | ``lfoss/2025b`` diff --git a/docs/version-specific/supported-software/q/QuickPIC.md b/docs/version-specific/supported-software/q/QuickPIC.md deleted file mode 100644 index 81f1f45b44..0000000000 --- a/docs/version-specific/supported-software/q/QuickPIC.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# QuickPIC - -QuickPIC is a 3D parallel (MPI & OpenMP Hybrid) Quasi-Static PIC code, which is developed based on the framework UPIC. QuickPIC can efficiently simulate plasma based accelerator problems. This is the UCLA Plasma Simulation Group's official open-source repository for QuickPIC. - -*homepage*: - -version | toolchain ---------|---------- -``20210224`` | ``gompi/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/q/Qwt.md b/docs/version-specific/supported-software/q/Qwt.md index c0b047e0e7..9b43a4b2af 100644 --- a/docs/version-specific/supported-software/q/Qwt.md +++ b/docs/version-specific/supported-software/q/Qwt.md @@ -10,7 +10,6 @@ The Qwt library contains GUI Components and utility classes which are primarily version | toolchain --------|---------- -``6.2.0`` | ``GCCcore/11.2.0`` ``6.2.0`` | ``GCCcore/12.2.0`` ``6.3.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/q/index.md b/docs/version-specific/supported-software/q/index.md index eba407e47a..20b38c1e79 100644 --- a/docs/version-specific/supported-software/q/index.md +++ b/docs/version-specific/supported-software/q/index.md @@ -19,6 +19,8 @@ search: * [qforce](qforce.md) * [QGIS](QGIS.md) * [Qhull](Qhull.md) + * [qibo](qibo.md) + * [qibojit](qibojit.md) * [QIIME2](QIIME2.md) * [Qiskit](Qiskit.md) * [qmflows](qmflows.md) @@ -38,7 +40,6 @@ search: * [quarto](quarto.md) * [QUAST](QUAST.md) * [QuickFF](QuickFF.md) - * [QuickPIC](QuickPIC.md) * [QuickTree](QuickTree.md) * [QuPath](QuPath.md) * [Qutip](Qutip.md) diff --git a/docs/version-specific/supported-software/q/qibo.md b/docs/version-specific/supported-software/q/qibo.md new file mode 100644 index 0000000000..6384faf9db --- /dev/null +++ b/docs/version-specific/supported-software/q/qibo.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# qibo + +Qibo is an open-source full stack API for quantum simulation and quantum hardware control. + +*homepage*: + +version | toolchain +--------|---------- +``0.2.4`` | ``gfbf/2022b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/q/qibojit.md b/docs/version-specific/supported-software/q/qibojit.md new file mode 100644 index 0000000000..c69625beb9 --- /dev/null +++ b/docs/version-specific/supported-software/q/qibojit.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# qibojit + +This package provides acceleration features for Qibo simulations using just-in-time (JIT) custom kernel with numba. + +*homepage*: + +version | toolchain +--------|---------- +``0.1.2`` | ``foss/2022b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/q/qrupdate.md b/docs/version-specific/supported-software/q/qrupdate.md index ba4384a082..45d5bbc54f 100644 --- a/docs/version-specific/supported-software/q/qrupdate.md +++ b/docs/version-specific/supported-software/q/qrupdate.md @@ -10,7 +10,6 @@ qrupdate is a Fortran library for fast updates of QR and Cholesky decompositions version | toolchain --------|---------- -``1.1.2`` | ``GCCcore/11.2.0`` ``1.1.2`` | ``GCCcore/11.3.0`` ``1.1.2`` | ``GCCcore/12.3.0`` ``1.1.2`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/r/R-MXM.md b/docs/version-specific/supported-software/r/R-MXM.md deleted file mode 100644 index b3cfa5f963..0000000000 --- a/docs/version-specific/supported-software/r/R-MXM.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# R-MXM - -MXM: Feature Selection (Including Multiple Solutions) and Bayesian Networks - -*homepage*: - -version | toolchain ---------|---------- -``1.5.5`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/R-bundle-Bioconductor.md b/docs/version-specific/supported-software/r/R-bundle-Bioconductor.md index 44862ac43e..f11cb0bda1 100644 --- a/docs/version-specific/supported-software/r/R-bundle-Bioconductor.md +++ b/docs/version-specific/supported-software/r/R-bundle-Bioconductor.md @@ -10,8 +10,6 @@ Bioconductor provides tools for the analysis and coprehension of high-throughpu version | versionsuffix | toolchain --------|---------------|---------- -``3.14`` | ``-R-4.1.2`` | ``foss/2021b`` -``3.15`` | ``-R-4.2.0`` | ``foss/2021b`` ``3.15`` | ``-R-4.2.1`` | ``foss/2022a`` ``3.16`` | ``-R-4.2.2`` | ``foss/2022b`` ``3.18`` | ``-R-4.3.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/r/R-transport.md b/docs/version-specific/supported-software/r/R-transport.md deleted file mode 100644 index c220dee770..0000000000 --- a/docs/version-specific/supported-software/r/R-transport.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# R-transport - -transport: Computation of Optimal Transport Plans and Wasserstein Distances - -*homepage*: - -version | toolchain ---------|---------- -``0.13-0`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/R.md b/docs/version-specific/supported-software/r/R.md index 4293ffcdf8..e7e0eeeb7a 100644 --- a/docs/version-specific/supported-software/r/R.md +++ b/docs/version-specific/supported-software/r/R.md @@ -10,8 +10,6 @@ R is a free software environment for statistical computing and graphics. version | toolchain --------|---------- -``4.1.2`` | ``foss/2021b`` -``4.2.0`` | ``foss/2021b`` ``4.2.1`` | ``foss/2022a`` ``4.2.2`` | ``foss/2022b`` ``4.3.2`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/r/RASPA2.md b/docs/version-specific/supported-software/r/RASPA2.md index f278f42c41..e59f64ad18 100644 --- a/docs/version-specific/supported-software/r/RASPA2.md +++ b/docs/version-specific/supported-software/r/RASPA2.md @@ -11,6 +11,7 @@ RASPA is a software package for simulating adsorption and diffusion of molecules version | toolchain --------|---------- ``2.0.47`` | ``foss/2022a`` +``2.0.47`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/RAxML-NG.md b/docs/version-specific/supported-software/r/RAxML-NG.md index 5b0b5e77c0..a13ef16ccb 100644 --- a/docs/version-specific/supported-software/r/RAxML-NG.md +++ b/docs/version-specific/supported-software/r/RAxML-NG.md @@ -10,7 +10,6 @@ RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML version | toolchain --------|---------- -``1.1.0`` | ``GCC/11.2.0`` ``1.2.0`` | ``GCC/12.2.0`` ``1.2.0`` | ``GCC/12.3.0`` ``1.2.2`` | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/r/RAxML.md b/docs/version-specific/supported-software/r/RAxML.md index bcb36a42fb..895e6643d1 100644 --- a/docs/version-specific/supported-software/r/RAxML.md +++ b/docs/version-specific/supported-software/r/RAxML.md @@ -10,7 +10,6 @@ RAxML search algorithm for maximum likelihood based inference of phylogenetic tr version | versionsuffix | toolchain --------|---------------|---------- -``8.2.12`` | ``-hybrid-avx2`` | ``gompi/2021b`` ``8.2.12`` | ``-avx2`` | ``gompi/2022b`` ``8.2.12`` | ``-hybrid-avx2`` | ``gompi/2023a`` ``8.2.13`` | | ``gompi/2023a`` diff --git a/docs/version-specific/supported-software/r/RDKit.md b/docs/version-specific/supported-software/r/RDKit.md index 8b6afd9327..c777357cfc 100644 --- a/docs/version-specific/supported-software/r/RDKit.md +++ b/docs/version-specific/supported-software/r/RDKit.md @@ -10,7 +10,6 @@ RDKit is a collection of cheminformatics and machine-learning software written i version | toolchain --------|---------- -``2022.03.5`` | ``foss/2021b`` ``2022.09.4`` | ``foss/2022a`` ``2024.03.3`` | ``foss/2023a`` ``2024.09.6`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/r/RE2.md b/docs/version-specific/supported-software/r/RE2.md index fef90c6b6b..02d7d3eb0f 100644 --- a/docs/version-specific/supported-software/r/RE2.md +++ b/docs/version-specific/supported-software/r/RE2.md @@ -10,7 +10,6 @@ RE2 is a fast, safe, thread-friendly alternative to backtracking regular express version | toolchain --------|---------- -``2022-02-01`` | ``GCCcore/11.2.0`` ``2022-06-01`` | ``GCCcore/11.3.0`` ``2023-03-01`` | ``GCCcore/12.2.0`` ``2023-08-01`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/r/RGI.md b/docs/version-specific/supported-software/r/RGI.md new file mode 100644 index 0000000000..990892fa10 --- /dev/null +++ b/docs/version-specific/supported-software/r/RGI.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# RGI + +Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models. + +*homepage*: + +version | toolchain +--------|---------- +``6.0.6`` | ``gfbf/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/r/RNA-SeQC.md b/docs/version-specific/supported-software/r/RNA-SeQC.md deleted file mode 100644 index 9fabbf9068..0000000000 --- a/docs/version-specific/supported-software/r/RNA-SeQC.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# RNA-SeQC - -RNA-SeQC is a java program which computes a series of quality control metrics for RNA-seq data. The input can be one or more BAM files. The output consists of HTML reports and tab delimited files of metrics data. This program can be valuable for comparing sequencing quality across different samples or experiments to evaluate different experimental parameters. It can also be run on individual samples as a means of quality control before continuing with downstream analysis. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.8`` | ``-Java-11`` | ``GCCcore/11.2.0`` -``2.4.2`` | | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/ROCR-Runtime.md b/docs/version-specific/supported-software/r/ROCR-Runtime.md deleted file mode 100644 index 5db9438679..0000000000 --- a/docs/version-specific/supported-software/r/ROCR-Runtime.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ROCR-Runtime - -The user-mode API interfaces and libraries necessary for host applications to launch compute kernels to available HSA ROCm kernel agents - -*homepage*: - -version | toolchain ---------|---------- -``4.5.0`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/ROCT-Thunk-Interface.md b/docs/version-specific/supported-software/r/ROCT-Thunk-Interface.md deleted file mode 100644 index b9347ea1e2..0000000000 --- a/docs/version-specific/supported-software/r/ROCT-Thunk-Interface.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ROCT-Thunk-Interface - -The user-mode API interfaces used to interact with the ROCk driver - -*homepage*: - -version | toolchain ---------|---------- -``4.5.0`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/ROCm-CompilerSupport.md b/docs/version-specific/supported-software/r/ROCm-CompilerSupport.md deleted file mode 100644 index ce06dc3cbc..0000000000 --- a/docs/version-specific/supported-software/r/ROCm-CompilerSupport.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ROCm-CompilerSupport - -The compiler support repository provides various Lightning Compiler related services - -*homepage*: - -version | toolchain ---------|---------- -``4.5.0`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/ROCm.md b/docs/version-specific/supported-software/r/ROCm.md deleted file mode 100644 index 7e6dc4438f..0000000000 --- a/docs/version-specific/supported-software/r/ROCm.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# ROCm - -AMD ROCm is the first open-source software development platform for HPC/Hyperscale-class GPU computing. AMD ROCm brings the UNIX philosophy of choice, minimalism and modular software development to GPU computing. - -*homepage*: - -version | toolchain ---------|---------- -``4.5.0`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/ROOT.md b/docs/version-specific/supported-software/r/ROOT.md index 7fe5569f81..4f1de6c8e9 100644 --- a/docs/version-specific/supported-software/r/ROOT.md +++ b/docs/version-specific/supported-software/r/ROOT.md @@ -10,7 +10,6 @@ The ROOT system provides a set of OO frameworks with all the functionality n version | toolchain --------|---------- -``6.24.06`` | ``foss/2021b`` ``6.26.06`` | ``foss/2022a`` ``6.26.10`` | ``foss/2022b`` ``6.30.06`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/r/RSEM.md b/docs/version-specific/supported-software/r/RSEM.md index 26bb16b6a2..9052c9530a 100644 --- a/docs/version-specific/supported-software/r/RSEM.md +++ b/docs/version-specific/supported-software/r/RSEM.md @@ -10,7 +10,6 @@ RNA-Seq by Expectation-Maximization version | toolchain --------|---------- -``1.3.3`` | ``foss/2021b`` ``1.3.3`` | ``foss/2022a`` ``1.3.3`` | ``foss/2023a`` ``1.3.3`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/r/RSeQC.md b/docs/version-specific/supported-software/r/RSeQC.md index 684047020a..55dce2abd8 100644 --- a/docs/version-specific/supported-software/r/RSeQC.md +++ b/docs/version-specific/supported-software/r/RSeQC.md @@ -10,7 +10,6 @@ RSeQC provides a number of useful modules that can comprehensively evaluate hig version | toolchain --------|---------- -``4.0.0`` | ``foss/2021b`` ``5.0.1`` | ``foss/2023a`` ``5.0.4`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/r/Racon.md b/docs/version-specific/supported-software/r/Racon.md index d4bbb8b147..506248ad2d 100644 --- a/docs/version-specific/supported-software/r/Racon.md +++ b/docs/version-specific/supported-software/r/Racon.md @@ -10,7 +10,6 @@ Ultrafast consensus module for raw de novo genome assembly of long uncorrected r version | toolchain --------|---------- -``1.5.0`` | ``GCCcore/11.2.0`` ``1.5.0`` | ``GCCcore/11.3.0`` ``1.5.0`` | ``GCCcore/12.2.0`` ``1.5.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/r/RapidJSON.md b/docs/version-specific/supported-software/r/RapidJSON.md index c567f236b0..6f04b1148a 100644 --- a/docs/version-specific/supported-software/r/RapidJSON.md +++ b/docs/version-specific/supported-software/r/RapidJSON.md @@ -15,7 +15,6 @@ version | toolchain ``1.1.0-20240815`` | ``GCCcore/13.3.0`` ``1.1.0-20250205`` | ``GCCcore/14.2.0`` ``1.1.0-20250205`` | ``GCCcore/14.3.0`` -``1.1.0`` | ``GCCcore/11.2.0`` ``1.1.0`` | ``GCCcore/11.3.0`` ``1.1.0`` | ``GCCcore/12.2.0`` ``1.1.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/r/Raven.md b/docs/version-specific/supported-software/r/Raven.md deleted file mode 100644 index 430a5d08d6..0000000000 --- a/docs/version-specific/supported-software/r/Raven.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Raven - -Raven is a de novo genome assembler for long uncorrected reads. - -*homepage*: - -version | toolchain ---------|---------- -``1.8.1`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/Ray-project.md b/docs/version-specific/supported-software/r/Ray-project.md index 43154209f3..45968d2ce7 100644 --- a/docs/version-specific/supported-software/r/Ray-project.md +++ b/docs/version-specific/supported-software/r/Ray-project.md @@ -10,8 +10,6 @@ Ray is a fast and simple framework for building and running distributed applicat version | toolchain --------|---------- -``1.13.0`` | ``foss/2021b`` -``1.9.2`` | ``foss/2021b`` ``2.2.0`` | ``foss/2022a`` ``2.37.0`` | ``foss/2024a`` ``2.47.1`` | ``foss/2025a`` diff --git a/docs/version-specific/supported-software/r/ReFrame.md b/docs/version-specific/supported-software/r/ReFrame.md index 0369ec97ed..8c2c176dc2 100644 --- a/docs/version-specific/supported-software/r/ReFrame.md +++ b/docs/version-specific/supported-software/r/ReFrame.md @@ -15,10 +15,6 @@ version | versionsuffix | toolchain ``3.11.1`` | | ``system`` ``3.11.2`` | | ``system`` ``3.12.0`` | | ``system`` -``3.4.1`` | | ``system`` -``3.5.0`` | | ``system`` -``3.5.1`` | | ``system`` -``3.5.2`` | | ``system`` ``3.6.2`` | | ``system`` ``3.6.3`` | | ``system`` ``3.7.3`` | | ``system`` @@ -43,6 +39,8 @@ version | versionsuffix | toolchain ``4.8.2`` | | ``GCCcore/14.3.0`` ``4.8.4`` | | ``GCCcore/14.2.0`` ``4.8.4`` | | ``GCCcore/14.3.0`` +``4.9.1`` | | ``GCCcore/14.2.0`` +``4.9.1`` | | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/Redis.md b/docs/version-specific/supported-software/r/Redis.md index ca3b7f9a2c..7a7fb7ec69 100644 --- a/docs/version-specific/supported-software/r/Redis.md +++ b/docs/version-specific/supported-software/r/Redis.md @@ -10,7 +10,6 @@ Redis is an open source (BSD licensed), in-memory data structure store, used as version | toolchain --------|---------- -``6.2.6`` | ``GCC/11.2.0`` ``7.0.8`` | ``GCC/11.3.0`` ``7.2.3`` | ``GCCcore/12.2.0`` ``7.2.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/r/RegTools.md b/docs/version-specific/supported-software/r/RegTools.md index aee393b046..03752505b1 100644 --- a/docs/version-specific/supported-software/r/RegTools.md +++ b/docs/version-specific/supported-software/r/RegTools.md @@ -10,7 +10,6 @@ RegTools is a set of tools that integrate DNA-seq and RNA-seq data to help inter version | toolchain --------|---------- -``0.5.2`` | ``foss/2021b`` ``1.0.0`` | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/r/Regenie.md b/docs/version-specific/supported-software/r/Regenie.md index 795d86a816..070567ee6d 100644 --- a/docs/version-specific/supported-software/r/Regenie.md +++ b/docs/version-specific/supported-software/r/Regenie.md @@ -4,13 +4,12 @@ search: --- # Regenie -Regenie is a C++ program for whole genome regression modelling of large genome-wide association studies. It is developed and supported by a team of scientists at the Regeneron Genetics Center. +Regenie is a C++ program for whole genome regression modelling of large genome-wide association studies. It is developed and supported by a team of scientists at the Regeneron Genetics Center. *homepage*: version | toolchain --------|---------- -``3.1.2`` | ``GCC/11.2.0`` ``4.1`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/r/RevBayes.md b/docs/version-specific/supported-software/r/RevBayes.md index 27a753bddb..c04b3fd3e0 100644 --- a/docs/version-specific/supported-software/r/RevBayes.md +++ b/docs/version-specific/supported-software/r/RevBayes.md @@ -6,11 +6,10 @@ search: RevBayes provides an interactive environment for statistical computation in phylogenetics. It is primarily intended for modeling, simulation, and Bayesian inference in evolutionary biology, particularly phylogenetics. -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.1.1`` | ``GCC/11.2.0`` ``1.2.1`` | ``gompi/2022a`` ``1.3.0`` | ``gompi/2024a`` diff --git a/docs/version-specific/supported-software/r/Roary.md b/docs/version-specific/supported-software/r/Roary.md index 713769f383..6b1bb3ea7d 100644 --- a/docs/version-specific/supported-software/r/Roary.md +++ b/docs/version-specific/supported-software/r/Roary.md @@ -11,6 +11,7 @@ Rapid large-scale prokaryote pan genome analysis version | toolchain --------|---------- ``3.13.0`` | ``foss/2022a`` +``3.13.0`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/Ruby.md b/docs/version-specific/supported-software/r/Ruby.md index 3e39ddf83f..58883c281c 100644 --- a/docs/version-specific/supported-software/r/Ruby.md +++ b/docs/version-specific/supported-software/r/Ruby.md @@ -10,7 +10,6 @@ Ruby is a dynamic, open source programming language with a focus on simplicity version | toolchain --------|---------- -``3.0.1`` | ``GCCcore/11.2.0`` ``3.0.3`` | ``GCCcore/11.3.0`` ``3.0.3`` | ``GCCcore/12.3.0`` ``3.0.5`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/r/Rust.md b/docs/version-specific/supported-software/r/Rust.md index 2a2f5dc0dc..7f58d795d2 100644 --- a/docs/version-specific/supported-software/r/Rust.md +++ b/docs/version-specific/supported-software/r/Rust.md @@ -10,8 +10,6 @@ Rust is a systems programming language that runs blazingly fast, prevents segfau version | versionsuffix | toolchain --------|---------------|---------- -``1.54.0`` | | ``GCCcore/11.2.0`` -``1.56.0`` | | ``GCCcore/11.2.0`` ``1.60.0`` | | ``GCCcore/11.3.0`` ``1.65.0`` | | ``GCCcore/11.3.0`` ``1.65.0`` | | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/r/index.md b/docs/version-specific/supported-software/r/index.md index 537c762c1f..40ea98eeea 100644 --- a/docs/version-specific/supported-software/r/index.md +++ b/docs/version-specific/supported-software/r/index.md @@ -13,9 +13,7 @@ search: * [R-bundle-CRAN](R-bundle-CRAN.md) * [R-crumble](R-crumble.md) * [R-INLA](R-INLA.md) - * [R-MXM](R-MXM.md) * [R-tesseract](R-tesseract.md) - * [R-transport](R-transport.md) * [R2jags](R2jags.md) * [r5py](r5py.md) * [RabbitMQ](RabbitMQ.md) @@ -32,8 +30,8 @@ search: * [Rasqal](Rasqal.md) * [rasterio](rasterio.md) * [rasterstats](rasterstats.md) + * [ratarmount](ratarmount.md) * [rav1e](rav1e.md) - * [Raven](Raven.md) * [RAxML](RAxML.md) * [RAxML-NG](RAxML-NG.md) * [Ray-project](Ray-project.md) @@ -75,6 +73,7 @@ search: * [RFdiffusion-models](RFdiffusion-models.md) * [RFdiffusion-schedules](RFdiffusion-schedules.md) * [rgdal](rgdal.md) + * [RGI](RGI.md) * [Rgurobi](Rgurobi.md) * [RHEIA](RHEIA.md) * [Rhodium](Rhodium.md) @@ -93,20 +92,13 @@ search: * [RMBlast](RMBlast.md) * [RMextract](RMextract.md) * [RNA-Bloom](RNA-Bloom.md) - * [RNA-SeQC](RNA-SeQC.md) * [rnamotif](rnamotif.md) * [rnaQUAST](rnaQUAST.md) * [RnBeads](RnBeads.md) * [Roary](Roary.md) * [robin-map](robin-map.md) - * [ROCm](ROCm.md) - * [rocm-cmake](rocm-cmake.md) - * [ROCm-CompilerSupport](ROCm-CompilerSupport.md) * [ROCm-LLVM](ROCm-LLVM.md) * [rocm-smi](rocm-smi.md) - * [rocminfo](rocminfo.md) - * [ROCR-Runtime](ROCR-Runtime.md) - * [ROCT-Thunk-Interface](ROCT-Thunk-Interface.md) * [ROOT](ROOT.md) * [rpmrebuild](rpmrebuild.md) * [RPostgreSQL](RPostgreSQL.md) diff --git a/docs/version-specific/supported-software/r/rapidcsv.md b/docs/version-specific/supported-software/r/rapidcsv.md index e419abd83e..de01a29108 100644 --- a/docs/version-specific/supported-software/r/rapidcsv.md +++ b/docs/version-specific/supported-software/r/rapidcsv.md @@ -10,7 +10,6 @@ Rapidcsv is a C++ header-only library for CSV parsing. While the name admittedly version | toolchain --------|---------- -``8.62`` | ``GCCcore/11.2.0`` ``8.64`` | ``GCCcore/11.3.0`` ``8.87`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/r/rasterio.md b/docs/version-specific/supported-software/r/rasterio.md index a652d71492..237675168f 100644 --- a/docs/version-specific/supported-software/r/rasterio.md +++ b/docs/version-specific/supported-software/r/rasterio.md @@ -10,7 +10,6 @@ Rasterio reads and writes geospatial raster data. version | toolchain --------|---------- -``1.2.10`` | ``foss/2021b`` ``1.3.4`` | ``foss/2022a`` ``1.3.8`` | ``foss/2022b`` ``1.3.9`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/r/ratarmount.md b/docs/version-specific/supported-software/r/ratarmount.md new file mode 100644 index 0000000000..ae4d3edeee --- /dev/null +++ b/docs/version-specific/supported-software/r/ratarmount.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# ratarmount + +Ratarmount collects all file positions inside a TAR so that it can easily jump to and read from any file without extracting it. It, then, mounts the TAR using mfusepy, a fork of fusepy, for read access just like archivemount. In contrast to libarchive, on which archivemount is based, random access and true seeking is supported. And in contrast to tarindexer, which also collects file positions for random access, ratarmount offers easy access via FUSE and support for compressed TARs. + +*homepage*: + +version | toolchain +--------|---------- +``1.2.1`` | ``GCCcore/14.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/r/rclone.md b/docs/version-specific/supported-software/r/rclone.md index 95744a01df..8c0c4b1303 100644 --- a/docs/version-specific/supported-software/r/rclone.md +++ b/docs/version-specific/supported-software/r/rclone.md @@ -10,7 +10,6 @@ Rclone is a command line program to sync files and directories to and from a va version | versionsuffix | toolchain --------|---------------|---------- -``1.54.1`` | ``-amd64`` | ``system`` ``1.56.0`` | ``-amd64`` | ``system`` ``1.57.0`` | | ``system`` ``1.63.1`` | ``-amd64`` | ``system`` diff --git a/docs/version-specific/supported-software/r/re2c.md b/docs/version-specific/supported-software/r/re2c.md index 691571e7b1..99acc89945 100644 --- a/docs/version-specific/supported-software/r/re2c.md +++ b/docs/version-specific/supported-software/r/re2c.md @@ -10,7 +10,6 @@ re2c is a free and open-source lexer generator for C and C++. Its main goal is g version | toolchain --------|---------- -``2.2`` | ``GCCcore/11.2.0`` ``2.2`` | ``GCCcore/11.3.0`` ``3.0`` | ``GCCcore/12.2.0`` ``3.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/r/redis-py.md b/docs/version-specific/supported-software/r/redis-py.md index 63c201f871..1ac83b379e 100644 --- a/docs/version-specific/supported-software/r/redis-py.md +++ b/docs/version-specific/supported-software/r/redis-py.md @@ -10,7 +10,6 @@ The Python interface to the Redis key-value store. version | toolchain --------|---------- -``4.3.3`` | ``foss/2021b`` ``4.5.1`` | ``foss/2022a`` ``5.0.1`` | ``GCCcore/12.2.0`` ``5.0.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/r/regionmask.md b/docs/version-specific/supported-software/r/regionmask.md index 29d6d3ae87..8974359321 100644 --- a/docs/version-specific/supported-software/r/regionmask.md +++ b/docs/version-specific/supported-software/r/regionmask.md @@ -13,7 +13,6 @@ version | toolchain ``0.10.0`` | ``foss/2022b`` ``0.12.1`` | ``foss/2023a`` ``0.13.0`` | ``foss/2024a`` -``0.9.0`` | ``foss/2021b`` ``0.9.0`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/r/rioxarray.md b/docs/version-specific/supported-software/r/rioxarray.md index 34d5b6a99d..ede67aedf1 100644 --- a/docs/version-specific/supported-software/r/rioxarray.md +++ b/docs/version-specific/supported-software/r/rioxarray.md @@ -10,10 +10,10 @@ geospatial xarray extension powered by rasterio version | toolchain --------|---------- -``0.11.1`` | ``foss/2021b`` ``0.14.0`` | ``foss/2022a`` ``0.15.0`` | ``foss/2023a`` ``0.19.0`` | ``foss/2024a`` +``0.21.0`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/rjags.md b/docs/version-specific/supported-software/r/rjags.md index 3c1624feac..f369dd3553 100644 --- a/docs/version-specific/supported-software/r/rjags.md +++ b/docs/version-specific/supported-software/r/rjags.md @@ -10,7 +10,6 @@ The rjags package is an interface to the JAGS library. version | versionsuffix | toolchain --------|---------------|---------- -``4-12`` | ``-R-4.1.2`` | ``foss/2021b`` ``4-13`` | ``-R-4.2.1`` | ``foss/2022a`` ``4-13`` | ``-R-4.2.2`` | ``foss/2022b`` ``4-15`` | ``-R-4.3.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/r/rnaQUAST.md b/docs/version-specific/supported-software/r/rnaQUAST.md index e48cd8a314..4543530c3e 100644 --- a/docs/version-specific/supported-software/r/rnaQUAST.md +++ b/docs/version-specific/supported-software/r/rnaQUAST.md @@ -10,7 +10,6 @@ rnaQUAST is a tool for evaluating RNA-Seq assemblies using reference genome and version | toolchain --------|---------- -``2.2.2`` | ``foss/2021b`` ``2.3.1`` | ``foss/2025a`` diff --git a/docs/version-specific/supported-software/r/robin-map.md b/docs/version-specific/supported-software/r/robin-map.md index a4b7a5d2d3..7cb00425af 100644 --- a/docs/version-specific/supported-software/r/robin-map.md +++ b/docs/version-specific/supported-software/r/robin-map.md @@ -14,6 +14,7 @@ version | toolchain ``1.4.0`` | ``GCCcore/13.3.0`` ``1.4.0`` | ``GCCcore/14.2.0`` ``1.4.0`` | ``GCCcore/14.3.0`` +``1.4.1`` | ``GCCcore/15.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/r/rocm-cmake.md b/docs/version-specific/supported-software/r/rocm-cmake.md deleted file mode 100644 index e673203ea9..0000000000 --- a/docs/version-specific/supported-software/r/rocm-cmake.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# rocm-cmake - -ROCM cmake modules provides cmake modules for common build tasks needed for the ROCM software stack - -*homepage*: - -version | toolchain ---------|---------- -``4.5.0`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/rocm-smi.md b/docs/version-specific/supported-software/r/rocm-smi.md index 31ee4a281c..6312fde1da 100644 --- a/docs/version-specific/supported-software/r/rocm-smi.md +++ b/docs/version-specific/supported-software/r/rocm-smi.md @@ -10,7 +10,6 @@ The ROCm System Management Interface Library, or ROCm SMI library, is part of th version | versionsuffix | toolchain --------|---------------|---------- -``4.5.0`` | | ``GCCcore/11.2.0`` ``5.4.4`` | | ``GCCcore/11.3.0`` ``5.6.0`` | | ``GCCcore/11.3.0`` ``7.6.0`` | ``-ROCm-6.4.1`` | ``GCCcore/14.2.0`` diff --git a/docs/version-specific/supported-software/r/rocminfo.md b/docs/version-specific/supported-software/r/rocminfo.md deleted file mode 100644 index 4d0902c628..0000000000 --- a/docs/version-specific/supported-software/r/rocminfo.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# rocminfo - -ROCm Application for Reporting System Info - -*homepage*: - -version | toolchain ---------|---------- -``4.5.0`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/r/rpy2.md b/docs/version-specific/supported-software/r/rpy2.md index 799398edca..fcff523f4a 100644 --- a/docs/version-specific/supported-software/r/rpy2.md +++ b/docs/version-specific/supported-software/r/rpy2.md @@ -6,13 +6,13 @@ search: rpy2 is an interface to R running embedded in a Python process. -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.4.5`` | ``foss/2021b`` ``3.5.15`` | ``foss/2022a`` ``3.5.15`` | ``foss/2023a`` +``3.6.4`` | ``foss/2024a`` ``3.6.4`` | ``foss/2025a`` diff --git a/docs/version-specific/supported-software/r/ruamel.yaml.md b/docs/version-specific/supported-software/r/ruamel.yaml.md index 45de8848ae..8c7c56b4ef 100644 --- a/docs/version-specific/supported-software/r/ruamel.yaml.md +++ b/docs/version-specific/supported-software/r/ruamel.yaml.md @@ -10,7 +10,6 @@ ruamel.yaml is a YAML 1.2 loader/dumper package for Python. version | toolchain --------|---------- -``0.17.21`` | ``GCCcore/11.2.0`` ``0.17.21`` | ``GCCcore/11.3.0`` ``0.17.21`` | ``GCCcore/12.2.0`` ``0.17.32`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/r/ruffus.md b/docs/version-specific/supported-software/r/ruffus.md index 3a76cea9d2..cbd00c29a4 100644 --- a/docs/version-specific/supported-software/r/ruffus.md +++ b/docs/version-specific/supported-software/r/ruffus.md @@ -11,7 +11,6 @@ Ruffus is a Computation Pipeline library for python. It is open-sourced, powerfu version | toolchain --------|---------- ``2.8.4`` | ``GCCcore/11.3.0`` -``2.8.4`` | ``foss/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SAMtools.md b/docs/version-specific/supported-software/s/SAMtools.md index 31e0123a16..254706f937 100644 --- a/docs/version-specific/supported-software/s/SAMtools.md +++ b/docs/version-specific/supported-software/s/SAMtools.md @@ -13,11 +13,7 @@ version | toolchain ``0.1.20`` | ``GCC/12.3.0`` ``1.13`` | ``GCC/11.3.0`` ``1.13`` | ``GCC/12.3.0`` -``1.14`` | ``GCC/11.2.0`` -``1.15`` | ``GCC/11.2.0`` -``1.15.1`` | ``GCC/11.2.0`` ``1.15.1`` | ``GCC/11.3.0`` -``1.16.1`` | ``GCC/11.2.0`` ``1.16.1`` | ``GCC/11.3.0`` ``1.17`` | ``GCC/12.2.0`` ``1.18`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/s/SCGid.md b/docs/version-specific/supported-software/s/SCGid.md deleted file mode 100644 index 86f5e3744a..0000000000 --- a/docs/version-specific/supported-software/s/SCGid.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SCGid - -A consensus approach to contig filtering and genome prediction from single-cell sequencing libraries - -*homepage*: - -version | toolchain ---------|---------- -``0.9b0`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SCONE.md b/docs/version-specific/supported-software/s/SCONE.md new file mode 100644 index 0000000000..744c3bf595 --- /dev/null +++ b/docs/version-specific/supported-software/s/SCONE.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# SCONE + +SCONE is open source software for predictive simulation of biological motion. + +*homepage*: + +version | toolchain +--------|---------- +``2.4.2`` | ``foss/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SCOTCH.md b/docs/version-specific/supported-software/s/SCOTCH.md index 76e8b3ae2b..985638a78b 100644 --- a/docs/version-specific/supported-software/s/SCOTCH.md +++ b/docs/version-specific/supported-software/s/SCOTCH.md @@ -10,8 +10,6 @@ Software package and libraries for sequential and parallel graph partitioning, s version | versionsuffix | toolchain --------|---------------|---------- -``6.1.2`` | | ``gompi/2021b`` -``6.1.2`` | | ``iimpi/2021b`` ``7.0.1`` | ``-int64`` | ``gompi/2022a`` ``7.0.1`` | | ``gompi/2022a`` ``7.0.1`` | | ``iimpi/2022a`` diff --git a/docs/version-specific/supported-software/s/SCons.md b/docs/version-specific/supported-software/s/SCons.md index 7d5be81a48..21cb6d50a1 100644 --- a/docs/version-specific/supported-software/s/SCons.md +++ b/docs/version-specific/supported-software/s/SCons.md @@ -10,7 +10,6 @@ SCons is a software construction tool. version | toolchain --------|---------- -``4.2.0`` | ``GCCcore/11.2.0`` ``4.4.0`` | ``GCCcore/11.3.0`` ``4.5.2`` | ``GCCcore/12.2.0`` ``4.5.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/s/SCopeLoomR.md b/docs/version-specific/supported-software/s/SCopeLoomR.md index 6dd0db947d..772359a16a 100644 --- a/docs/version-specific/supported-software/s/SCopeLoomR.md +++ b/docs/version-specific/supported-software/s/SCopeLoomR.md @@ -10,7 +10,6 @@ An R package (compatible with SCope) to create generic .loom files and extend th version | versionsuffix | toolchain --------|---------------|---------- -``0.13.0`` | ``-R-4.1.2`` | ``foss/2021b`` ``0.13.0_20220408`` | ``-R-4.2.1`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/s/SDL2.md b/docs/version-specific/supported-software/s/SDL2.md index 34921d0325..880301566c 100644 --- a/docs/version-specific/supported-software/s/SDL2.md +++ b/docs/version-specific/supported-software/s/SDL2.md @@ -10,7 +10,6 @@ SDL: Simple DirectMedia Layer, a cross-platform multimedia library version | toolchain --------|---------- -``2.0.20`` | ``GCCcore/11.2.0`` ``2.0.22`` | ``GCCcore/11.3.0`` ``2.26.3`` | ``GCCcore/12.2.0`` ``2.28.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/s/SELFIES.md b/docs/version-specific/supported-software/s/SELFIES.md deleted file mode 100644 index 709f83b6d6..0000000000 --- a/docs/version-specific/supported-software/s/SELFIES.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SELFIES - -Robust representation of semantically constrained graphs, in particular for molecules in chemistry - -*homepage*: - -version | toolchain ---------|---------- -``2.1.1`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SEPP.md b/docs/version-specific/supported-software/s/SEPP.md index 1b864cc9e5..e79677e5ee 100644 --- a/docs/version-specific/supported-software/s/SEPP.md +++ b/docs/version-specific/supported-software/s/SEPP.md @@ -10,7 +10,6 @@ SATe-enabled Phylogenetic Placement - addresses the problem of phylogenetic plac version | toolchain --------|---------- -``4.5.1`` | ``foss/2021b`` ``4.5.1`` | ``foss/2022a`` ``4.5.1`` | ``foss/2022b`` ``4.5.5`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/b/BLT.md b/docs/version-specific/supported-software/s/SHAPEIT5.md similarity index 77% rename from docs/version-specific/supported-software/b/BLT.md rename to docs/version-specific/supported-software/s/SHAPEIT5.md index 44b7248c1c..8630aa1e84 100644 --- a/docs/version-specific/supported-software/b/BLT.md +++ b/docs/version-specific/supported-software/s/SHAPEIT5.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# BLT +# SHAPEIT5 -BLT is an extension to the Tk toolkit, adding new widgets, geometry managers, and miscellaneous commands. +SHAPEIT5 is a software package to estimate haplotypes in large genotype datasets (WGS and SNP array). -*homepage*: +*homepage*: version | toolchain --------|---------- -``20181223`` | ``GCCcore/11.2.0`` +``5.1.1`` | ``GCC/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SHTns.md b/docs/version-specific/supported-software/s/SHTns.md deleted file mode 100644 index a752d9ee1b..0000000000 --- a/docs/version-specific/supported-software/s/SHTns.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SHTns - -Spherical Harmonic Transform library aimed at high performance numerical simulations in spherical geometries. - -*homepage*: - -version | toolchain ---------|---------- -``2.7`` | ``foss/2021b`` -``3.5.1`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SIONlib.md b/docs/version-specific/supported-software/s/SIONlib.md index 16558ede9e..8168b0524b 100644 --- a/docs/version-specific/supported-software/s/SIONlib.md +++ b/docs/version-specific/supported-software/s/SIONlib.md @@ -10,7 +10,6 @@ SIONlib is a scalable I/O library for parallel access to task-local files. The version | versionsuffix | toolchain --------|---------------|---------- -``1.7.7`` | ``-tools`` | ``GCCcore/11.2.0`` ``1.7.7`` | ``-tools`` | ``GCCcore/11.3.0`` ``1.7.7`` | ``-tools`` | ``GCCcore/12.2.0`` ``1.7.7`` | ``-tools`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/s/SISSO++.md b/docs/version-specific/supported-software/s/SISSO++.md deleted file mode 100644 index 8ae730c024..0000000000 --- a/docs/version-specific/supported-software/s/SISSO++.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SISSO++ - -C++ implementation of SISSO with built in Python bindings for an efficient python interface - -*homepage*: - -version | toolchain ---------|---------- -``1.1`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SISSO.md b/docs/version-specific/supported-software/s/SISSO.md deleted file mode 100644 index 4c88a6a46f..0000000000 --- a/docs/version-specific/supported-software/s/SISSO.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SISSO - -A data-driven method combining symbolic regression and compressed sensing toward accurate & interpretable models. - -*homepage*: - -version | toolchain ---------|---------- -``3.0.2`` | ``iimpi/2021b`` -``3.1-20220324`` | ``iimpi/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SKESA.md b/docs/version-specific/supported-software/s/SKESA.md index e4b8d02319..265aa8063c 100644 --- a/docs/version-specific/supported-software/s/SKESA.md +++ b/docs/version-specific/supported-software/s/SKESA.md @@ -10,7 +10,6 @@ SKESA is a de-novo sequence read assembler for cultured single isolate genomes b version | versionsuffix | toolchain --------|---------------|---------- -``2.4.0`` | ``_saute.1.3.0_1`` | ``gompi/2021b`` ``2.4.0`` | ``_saute.1.3.0_2`` | ``gompi/2023b`` ``2.4.0`` | ``_saute.1.3.0_2`` | ``gompi/2024a`` diff --git a/docs/version-specific/supported-software/s/SLEPc.md b/docs/version-specific/supported-software/s/SLEPc.md index c541c39ebb..1c5dd4c282 100644 --- a/docs/version-specific/supported-software/s/SLEPc.md +++ b/docs/version-specific/supported-software/s/SLEPc.md @@ -11,7 +11,6 @@ SLEPc (Scalable Library for Eigenvalue Problem Computations) is a software libra version | toolchain --------|---------- ``3.17.2`` | ``foss/2022a`` -``3.18.2`` | ``intel/2021b`` ``3.20.1`` | ``foss/2023a`` ``3.22.2`` | ``foss/2023b`` ``3.23.2`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/s/SLiM.md b/docs/version-specific/supported-software/s/SLiM.md index 6ec532b073..a61ad14cc9 100644 --- a/docs/version-specific/supported-software/s/SLiM.md +++ b/docs/version-specific/supported-software/s/SLiM.md @@ -10,7 +10,6 @@ SLiM is an evolutionary simulation framework that combines a powerful engine for version | toolchain --------|---------- -``4.0`` | ``GCC/11.2.0`` ``4.0.1`` | ``GCC/11.3.0`` ``5.0`` | ``gfbf/2023a`` ``5.0`` | ``gfbf/2024a`` diff --git a/docs/version-specific/supported-software/s/SMC++.md b/docs/version-specific/supported-software/s/SMC++.md index cd345310e5..cbfd3ff4e5 100644 --- a/docs/version-specific/supported-software/s/SMC++.md +++ b/docs/version-specific/supported-software/s/SMC++.md @@ -11,6 +11,7 @@ SMC++ is a program for estimating the size history of populations from whole gen version | toolchain --------|---------- ``1.15.4`` | ``foss/2022a`` +``1.15.4`` | ``gfbf/2025a`` ``1.15.4`` | ``gfbf/2025b`` diff --git a/docs/version-specific/supported-software/s/SNAP-ESA-python.md b/docs/version-specific/supported-software/s/SNAP-ESA-python.md deleted file mode 100644 index 9108dc0551..0000000000 --- a/docs/version-specific/supported-software/s/SNAP-ESA-python.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SNAP-ESA-python - -Python interface to the Sentinel Application Platform (SNAP) API - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``9.0.0`` | ``-Java-11-Python-2.7.18`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SNAP-HMM.md b/docs/version-specific/supported-software/s/SNAP-HMM.md index cfa56b0a7d..743c135386 100644 --- a/docs/version-specific/supported-software/s/SNAP-HMM.md +++ b/docs/version-specific/supported-software/s/SNAP-HMM.md @@ -13,6 +13,7 @@ version | toolchain ``20221022`` | ``GCC/11.3.0`` ``20221022`` | ``GCC/12.3.0`` ``20221022`` | ``GCC/13.3.0`` +``20221022`` | ``GCC/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SNAP.md b/docs/version-specific/supported-software/s/SNAP.md index e892f28456..55900a0740 100644 --- a/docs/version-specific/supported-software/s/SNAP.md +++ b/docs/version-specific/supported-software/s/SNAP.md @@ -10,7 +10,6 @@ Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for h version | toolchain --------|---------- -``2.0.1`` | ``GCC/11.2.0`` ``2.0.1`` | ``GCC/11.3.0`` ``2.0.1`` | ``GCC/12.2.0`` diff --git a/docs/version-specific/supported-software/s/SOCI.md b/docs/version-specific/supported-software/s/SOCI.md index a11a54281c..2550275d95 100644 --- a/docs/version-specific/supported-software/s/SOCI.md +++ b/docs/version-specific/supported-software/s/SOCI.md @@ -10,7 +10,6 @@ SOCI is a database access library for C++ that makes the illusion of embedding S version | toolchain --------|---------- -``4.0.3`` | ``GCC/11.2.0`` ``4.0.3`` | ``GCC/11.3.0`` ``4.0.3`` | ``GCC/12.2.0`` ``4.0.3`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/s/SOD.md b/docs/version-specific/supported-software/s/SOD.md new file mode 100644 index 0000000000..560e918379 --- /dev/null +++ b/docs/version-specific/supported-software/s/SOD.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# SOD + +SOD (standing for Site-Occupancy Disorder) is a package of tools for the computer modelling of periodic systems with site disorder, using the supercell ensemble method. + +*homepage*: + +version | toolchain +--------|---------- +``0.52`` | ``GCC/14.2.0`` +``0.62`` | ``GCC/14.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SPAM.md b/docs/version-specific/supported-software/s/SPAM.md new file mode 100644 index 0000000000..c07307b162 --- /dev/null +++ b/docs/version-specific/supported-software/s/SPAM.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# SPAM + +spam is an open-source python tool for quantitative data analysis for 2D images and 3D volumes for mechanics applications that has developed around x-ray and neutron tomography. + +*homepage*: + +version | toolchain +--------|---------- +``0.8.1.4`` | ``foss/2025a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SPAdes.md b/docs/version-specific/supported-software/s/SPAdes.md index b8b5674656..2afba13e78 100644 --- a/docs/version-specific/supported-software/s/SPAdes.md +++ b/docs/version-specific/supported-software/s/SPAdes.md @@ -10,7 +10,6 @@ Genome assembler for single-cell and isolates data sets version | versionsuffix | toolchain --------|---------------|---------- -``3.15.3`` | | ``GCC/11.2.0`` ``3.15.4`` | | ``GCC/12.2.0`` ``3.15.4`` | | ``GCC/12.3.0`` ``3.15.5`` | | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/s/SPH-EXA.md b/docs/version-specific/supported-software/s/SPH-EXA.md new file mode 100644 index 0000000000..8b2728566a --- /dev/null +++ b/docs/version-specific/supported-software/s/SPH-EXA.md @@ -0,0 +1,18 @@ +--- +search: + boost: 0.5 +--- +# SPH-EXA + +SPH-EXA is a C++20 simulation code for hydrodynamics simulations (with gravity and other physics), parallelized with MPI, OpenMP, CUDA, and HIP. + +*homepage*: + +version | versionsuffix | toolchain +--------|---------------|---------- +``0.96.2`` | ``-CUDA-12.4.0`` | ``foss/2023b`` +``0.96.2`` | ``-CUDA-12.9.1`` | ``foss/2025b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SPOTPY.md b/docs/version-specific/supported-software/s/SPOTPY.md deleted file mode 100644 index 11a19fdf81..0000000000 --- a/docs/version-specific/supported-software/s/SPOTPY.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SPOTPY - -SPOTPY is a Python framework that enables the use of Computational optimization techniques for calibration, uncertainty and sensitivity analysis techniques of almost every (environmental-) model. - -*homepage*: - -version | toolchain ---------|---------- -``1.5.14`` | ``intel/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SQLite.md b/docs/version-specific/supported-software/s/SQLite.md index 0dbc957097..bb3c1449c4 100644 --- a/docs/version-specific/supported-software/s/SQLite.md +++ b/docs/version-specific/supported-software/s/SQLite.md @@ -10,7 +10,6 @@ SQLite: SQL Database Engine in a C Library version | toolchain --------|---------- -``3.36`` | ``GCCcore/11.2.0`` ``3.38.3`` | ``GCCcore/11.3.0`` ``3.39.4`` | ``GCCcore/12.2.0`` ``3.41.2`` | ``GCCcore/13.1.0`` diff --git a/docs/version-specific/supported-software/s/SRA-Toolkit.md b/docs/version-specific/supported-software/s/SRA-Toolkit.md index 8689023b45..bd280aa825 100644 --- a/docs/version-specific/supported-software/s/SRA-Toolkit.md +++ b/docs/version-specific/supported-software/s/SRA-Toolkit.md @@ -11,13 +11,13 @@ The SRA Toolkit, and the source-code SRA System Development Kit (SDK), will all version | versionsuffix | toolchain --------|---------------|---------- ``3.0.0`` | ``-centos_linux64`` | ``system`` -``3.0.0`` | | ``gompi/2021b`` ``3.0.10`` | | ``gompi/2023a`` ``3.0.3`` | | ``gompi/2022a`` ``3.0.5`` | | ``gompi/2022b`` ``3.1.1`` | | ``gompi/2023b`` ``3.2.0`` | | ``gompi/2024a`` ``3.2.1`` | | ``gompi/2025a`` +``3.2.1`` | | ``gompi/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SRPRISM.md b/docs/version-specific/supported-software/s/SRPRISM.md index 077ac42eee..c02e57d5a0 100644 --- a/docs/version-specific/supported-software/s/SRPRISM.md +++ b/docs/version-specific/supported-software/s/SRPRISM.md @@ -11,6 +11,7 @@ Single Read Paired Read Indel Substitution Minimizer version | versionsuffix | toolchain --------|---------------|---------- ``3.3.2`` | ``-Java-11`` | ``GCCcore/12.3.0`` +``3.3.2`` | ``-Java-17`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SSW.md b/docs/version-specific/supported-software/s/SSW.md index 12895f2af5..32c4223ab7 100644 --- a/docs/version-specific/supported-software/s/SSW.md +++ b/docs/version-specific/supported-software/s/SSW.md @@ -10,9 +10,9 @@ SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Si version | toolchain --------|---------- -``1.1`` | ``GCCcore/11.2.0`` ``1.1`` | ``GCCcore/12.3.0`` ``1.1`` | ``GCCcore/13.2.0`` +``1.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/STAR-CCM+.md b/docs/version-specific/supported-software/s/STAR-CCM+.md index 6c92b226d8..ef0e6cbf2d 100644 --- a/docs/version-specific/supported-software/s/STAR-CCM+.md +++ b/docs/version-specific/supported-software/s/STAR-CCM+.md @@ -25,6 +25,10 @@ version | versionsuffix | toolchain ``19.02.009`` | | ``system`` ``19.06.008`` | ``-r8`` | ``system`` ``19.06.008`` | | ``system`` +``20.02.007`` | ``-r8`` | ``system`` +``20.04.008`` | | ``system`` +``21.02.007`` | ``-r8`` | ``system`` +``21.02.007`` | | ``system`` ``2302`` | ``-r8`` | ``system`` ``2302`` | | ``system`` ``2310`` | ``-r8`` | ``system`` @@ -33,6 +37,8 @@ version | versionsuffix | toolchain ``2410`` | | ``system`` ``24xx`` | ``-r8`` | ``system`` ``24xx`` | | ``system`` +``2602`` | ``-r8`` | ``system`` +``2602`` | | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/STAR.md b/docs/version-specific/supported-software/s/STAR.md index 4b5d5f5d78..323db4f644 100644 --- a/docs/version-specific/supported-software/s/STAR.md +++ b/docs/version-specific/supported-software/s/STAR.md @@ -20,7 +20,6 @@ version | toolchain ``2.7.11b`` | ``GCC/13.3.0`` ``2.7.11b`` | ``GCC/14.3.0`` ``2.7.11b_alpha_2024-02-09`` | ``GCC/12.3.0`` -``2.7.9a`` | ``GCC/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/STEAK.md b/docs/version-specific/supported-software/s/STEAK.md deleted file mode 100644 index 210aeca074..0000000000 --- a/docs/version-specific/supported-software/s/STEAK.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# STEAK - -Detects integrations of any sort in high-throughput sequencing (HTS) data. STEAK was built for validating and discovering transposable element (TE) and retroviral integrations in a variety of HTS data. The software performs on both single-end (SE) and paired-end ( PE) libraries and on a variety of HTS sequencing strategies. It can be applied to a broad range of research interests and clinical uses such as population genetic studies and detecting polymorphic integrations. - -*homepage*: - -version | toolchain ---------|---------- -``2019.09.12`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/STREAmS.md b/docs/version-specific/supported-software/s/STREAmS.md new file mode 100644 index 0000000000..d1ad0c6122 --- /dev/null +++ b/docs/version-specific/supported-software/s/STREAmS.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# STREAmS + +High-order solver for compressible turbulent flows + +*homepage*: + +version | toolchain +--------|---------- +``2.1.0`` | ``foss/2025b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/STRique.md b/docs/version-specific/supported-software/s/STRique.md deleted file mode 100644 index e019a19a05..0000000000 --- a/docs/version-specific/supported-software/s/STRique.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# STRique - -STRique is a python package to analyze repeat expansion and methylation states of short tandem repeats (STR) in Oxford Nanopore Technology (ONT) long read sequencing data. - -*homepage*: - -version | toolchain ---------|---------- -``0.4.2`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SUMO.md b/docs/version-specific/supported-software/s/SUMO.md index 349e795aa2..83fa71aa14 100644 --- a/docs/version-specific/supported-software/s/SUMO.md +++ b/docs/version-specific/supported-software/s/SUMO.md @@ -10,8 +10,6 @@ Simulation of Urban MObility" (SUMO) is an open source, highly portable, microsc version | toolchain --------|---------- -``1.12.0`` | ``foss/2021b`` -``1.14.1`` | ``foss/2021b`` ``1.20.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/s/SUNDIALS.md b/docs/version-specific/supported-software/s/SUNDIALS.md index 2bcaab8fb0..bca7912d21 100644 --- a/docs/version-specific/supported-software/s/SUNDIALS.md +++ b/docs/version-specific/supported-software/s/SUNDIALS.md @@ -10,7 +10,6 @@ SUNDIALS: SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers version | versionsuffix | toolchain --------|---------------|---------- -``6.3.0`` | | ``foss/2021b`` ``6.3.0`` | | ``foss/2022a`` ``6.5.1`` | | ``foss/2022a`` ``6.6.0`` | | ``foss/2022b`` @@ -20,6 +19,7 @@ version | versionsuffix | toolchain ``7.0.0`` | | ``intel/2023b`` ``7.3.0`` | | ``foss/2024a`` ``7.3.0`` | | ``foss/2025a`` +``7.6.0`` | | ``foss/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SURVIVOR.md b/docs/version-specific/supported-software/s/SURVIVOR.md index 2bd7e9b4c7..4d4e2a1d27 100644 --- a/docs/version-specific/supported-software/s/SURVIVOR.md +++ b/docs/version-specific/supported-software/s/SURVIVOR.md @@ -10,7 +10,6 @@ Toolset for SV simulation, comparison and filtering version | toolchain --------|---------- -``1.0.7-19-ged1ca51`` | ``GCC/11.2.0`` ``1.0.7-19-ged1ca51`` | ``GCC/12.2.0`` ``1.0.7-20231201`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/s/SVG.md b/docs/version-specific/supported-software/s/SVG.md index e50c2fe3d9..4ebce947ac 100644 --- a/docs/version-specific/supported-software/s/SVG.md +++ b/docs/version-specific/supported-software/s/SVG.md @@ -10,7 +10,6 @@ Perl binding for SVG version | toolchain --------|---------- -``2.87`` | ``GCC/11.2.0`` ``2.87`` | ``GCC/11.3.0`` ``2.87`` | ``GCC/12.2.0`` diff --git a/docs/version-specific/supported-software/s/SWASH.md b/docs/version-specific/supported-software/s/SWASH.md new file mode 100644 index 0000000000..8eae6f2826 --- /dev/null +++ b/docs/version-specific/supported-software/s/SWASH.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# SWASH + +SWASH is a general-purpose numerical tool for simulating unsteady, non-hydrostatic, free-surface, rotational flow and transport phenomena in coastal waters as driven by waves, tides, buoyancy and wind forces. + +*homepage*: + +version | toolchain +--------|---------- +``20260309`` | ``intel/2025a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SWIG.md b/docs/version-specific/supported-software/s/SWIG.md index 059e87eef6..4e4f3e0f4b 100644 --- a/docs/version-specific/supported-software/s/SWIG.md +++ b/docs/version-specific/supported-software/s/SWIG.md @@ -11,7 +11,6 @@ Fork of SWIG with support for MATLAB. SWIG is a software development tool that c version | versionsuffix | toolchain --------|---------------|---------- ``20180415`` | ``-MATLAB`` | ``GCCcore/13.3.0`` -``4.0.2`` | | ``GCCcore/11.2.0`` ``4.0.2`` | | ``GCCcore/11.3.0`` ``4.1.1`` | | ``GCCcore/12.2.0`` ``4.1.1`` | | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/s/SYSMOIC.md b/docs/version-specific/supported-software/s/SYSMOIC.md new file mode 100644 index 0000000000..f302f88ea8 --- /dev/null +++ b/docs/version-specific/supported-software/s/SYSMOIC.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# SYSMOIC + +SYSMOIC is a research, non-commercial, program package for the calculation and graphical visualization of a number of time-independent (static) and time-dependent (dynamic) magnetic and electric molecular property densities, which are invariant with respect to the choice of the reference origin. + +*homepage*: + +version | toolchain +--------|---------- +``2024.2`` | ``GCCcore/14.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/Salmon.md b/docs/version-specific/supported-software/s/Salmon.md index 9b29fb4961..9ed0b0cb02 100644 --- a/docs/version-specific/supported-software/s/Salmon.md +++ b/docs/version-specific/supported-software/s/Salmon.md @@ -13,7 +13,6 @@ version | toolchain ``1.10.1`` | ``GCC/12.2.0`` ``1.10.3`` | ``GCC/12.3.0`` ``1.10.3`` | ``GCC/13.3.0`` -``1.4.0`` | ``GCC/11.2.0`` ``1.9.0`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/s/ScaFaCoS.md b/docs/version-specific/supported-software/s/ScaFaCoS.md index 9c69b08f86..8d151967e2 100644 --- a/docs/version-specific/supported-software/s/ScaFaCoS.md +++ b/docs/version-specific/supported-software/s/ScaFaCoS.md @@ -10,7 +10,6 @@ ScaFaCoS is a library of scalable fast coulomb solvers. version | toolchain --------|---------- -``1.0.1`` | ``foss/2021b`` ``1.0.4`` | ``foss/2022a`` ``1.0.4`` | ``foss/2022b`` ``1.0.4`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/s/ScaLAPACK.md b/docs/version-specific/supported-software/s/ScaLAPACK.md index 4429b0b963..af1ff3c94f 100644 --- a/docs/version-specific/supported-software/s/ScaLAPACK.md +++ b/docs/version-specific/supported-software/s/ScaLAPACK.md @@ -10,7 +10,6 @@ The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines version | versionsuffix | toolchain --------|---------------|---------- -``2.1.0`` | ``-fb`` | ``gompi/2021b`` ``2.2.0`` | ``-fb`` | ``gmpich/2024.06`` ``2.2.0`` | ``-fb`` | ``gompi/2022.05`` ``2.2.0`` | ``-fb`` | ``gompi/2022.10`` @@ -24,8 +23,10 @@ version | versionsuffix | toolchain ``2.2.0`` | ``-fb`` | ``nvompi/2022.07`` ``2.2.2`` | ``-fb`` | ``gompi/2025a`` ``2.2.2`` | ``-fb`` | ``gompi/2025b`` +``2.2.2`` | ``-fb`` | ``gompi/2026.1`` ``2.2.2`` | ``-fb`` | ``lmpich/2025b`` ``2.2.2`` | ``-fb`` | ``lompi/2025b`` +``2.2.2`` | ``-fb`` | ``lompi/2026.1`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Scalene.md b/docs/version-specific/supported-software/s/Scalene.md index c07c13c971..8367267acc 100644 --- a/docs/version-specific/supported-software/s/Scalene.md +++ b/docs/version-specific/supported-software/s/Scalene.md @@ -10,7 +10,6 @@ Scalene is a high-performance CPU, GPU and memory profiler for Python that does version | toolchain --------|---------- -``1.5.13`` | ``GCCcore/11.2.0`` ``1.5.20`` | ``GCCcore/11.3.0`` ``1.5.26`` | ``GCCcore/12.2.0`` ``1.5.26`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/s/SciPy-bundle.md b/docs/version-specific/supported-software/s/SciPy-bundle.md index 7191e712e5..a782e20a65 100644 --- a/docs/version-specific/supported-software/s/SciPy-bundle.md +++ b/docs/version-specific/supported-software/s/SciPy-bundle.md @@ -10,9 +10,6 @@ Bundle of Python packages for scientific software version | versionsuffix | toolchain --------|---------------|---------- -``2021.10`` | ``-Python-2.7.18`` | ``foss/2021b`` -``2021.10`` | | ``foss/2021b`` -``2021.10`` | | ``intel/2021b`` ``2022.05`` | | ``foss/2022.05`` ``2022.05`` | | ``foss/2022a`` ``2022.05`` | | ``intel/2022.05`` diff --git a/docs/version-specific/supported-software/s/Score-P.md b/docs/version-specific/supported-software/s/Score-P.md index cff88e2488..7a40dd660b 100644 --- a/docs/version-specific/supported-software/s/Score-P.md +++ b/docs/version-specific/supported-software/s/Score-P.md @@ -10,8 +10,6 @@ The Score-P measurement infrastructure is a highly scalable and easy-to-use too version | versionsuffix | toolchain --------|---------------|---------- -``8.0`` | ``-CUDA-11.4.1`` | ``gompi/2021b`` -``8.0`` | | ``gompi/2021b`` ``8.0`` | ``-CUDA-11.7.0`` | ``gompi/2022a`` ``8.0`` | | ``gompi/2022a`` ``8.1`` | ``-CUDA-12.0.0`` | ``gompi/2022b`` diff --git a/docs/version-specific/supported-software/s/SeaView.md b/docs/version-specific/supported-software/s/SeaView.md deleted file mode 100644 index cfc4f69333..0000000000 --- a/docs/version-specific/supported-software/s/SeaView.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SeaView - -SeaView is a multiplatform, graphical user interface for multiple sequence alignment and molecular phylogeny. - -*homepage*: - -version | toolchain ---------|---------- -``5.0.5`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Seaborn.md b/docs/version-specific/supported-software/s/Seaborn.md index c15932d7cc..5685a72ab9 100644 --- a/docs/version-specific/supported-software/s/Seaborn.md +++ b/docs/version-specific/supported-software/s/Seaborn.md @@ -10,8 +10,6 @@ Seaborn is a Python visualization library based on matplotlib. It provides a hi version | versionsuffix | toolchain --------|---------------|---------- -``0.11.2`` | | ``foss/2021b`` -``0.11.2`` | | ``intel/2021b`` ``0.12.1`` | | ``foss/2022a`` ``0.12.2`` | | ``foss/2022b`` ``0.13.2`` | | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/s/Sentaurus.md b/docs/version-specific/supported-software/s/Sentaurus.md new file mode 100644 index 0000000000..a2ff615426 --- /dev/null +++ b/docs/version-specific/supported-software/s/Sentaurus.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Sentaurus + +Sentaurus Workbench is a complete graphical environment for creating, managing, executing and analyzing TCAD simulations. + +*homepage*: + +version | toolchain +--------|---------- +``W-2024.09`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SeqAn.md b/docs/version-specific/supported-software/s/SeqAn.md index 87476d7a59..4ec32287d0 100644 --- a/docs/version-specific/supported-software/s/SeqAn.md +++ b/docs/version-specific/supported-software/s/SeqAn.md @@ -10,8 +10,8 @@ SeqAn is an open source C++ library of efficient algorithms and data structures version | versionsuffix | toolchain --------|---------------|---------- -``2.4.0`` | | ``GCCcore/11.2.0`` ``2.4.0`` | ``-Python-%(pyver)s`` | ``GCCcore/12.3.0`` +``2.5.2`` | | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SeqLib.md b/docs/version-specific/supported-software/s/SeqLib.md index 1b5ccbf5ed..e46705c20e 100644 --- a/docs/version-specific/supported-software/s/SeqLib.md +++ b/docs/version-specific/supported-software/s/SeqLib.md @@ -10,9 +10,9 @@ C++ interface to HTSlib, BWA-MEM and Fermi. version | toolchain --------|---------- -``1.2.0`` | ``GCC/11.2.0`` ``1.2.0`` | ``GCC/12.3.0`` ``1.2.0`` | ``GCC/13.2.0`` +``1.2.0`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Serf.md b/docs/version-specific/supported-software/s/Serf.md index 98b28f4ea3..c9ef5a5f6e 100644 --- a/docs/version-specific/supported-software/s/Serf.md +++ b/docs/version-specific/supported-software/s/Serf.md @@ -10,7 +10,6 @@ The serf library is a high performance C-based HTTP client library built upon t version | toolchain --------|---------- -``1.3.9`` | ``GCCcore/11.2.0`` ``1.3.9`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/s/Seurat.md b/docs/version-specific/supported-software/s/Seurat.md index 5406ab100d..6bcc221d87 100644 --- a/docs/version-specific/supported-software/s/Seurat.md +++ b/docs/version-specific/supported-software/s/Seurat.md @@ -11,11 +11,11 @@ Seurat is an R package designed for QC, analysis, and exploration of single cell version | versionsuffix | toolchain --------|---------------|---------- ``4.2.0`` | ``-R-4.2.1`` | ``foss/2022a`` -``4.3.0`` | ``-R-4.1.2`` | ``foss/2021b`` ``4.3.0`` | ``-R-4.2.1`` | ``foss/2022a`` ``4.4.0`` | ``-R-4.2.2`` | ``foss/2022b`` ``5.0.1`` | ``-R-4.2.2`` | ``foss/2022b`` ``5.1.0`` | ``-R-4.3.2`` | ``foss/2023a`` +``5.4.0`` | ``-R-4.4.2`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Shapely.md b/docs/version-specific/supported-software/s/Shapely.md index fac28730a8..2df838aaa9 100644 --- a/docs/version-specific/supported-software/s/Shapely.md +++ b/docs/version-specific/supported-software/s/Shapely.md @@ -10,8 +10,6 @@ Shapely is a BSD-licensed Python package for manipulation and analysis of planar version | toolchain --------|---------- -``1.8.1.post1`` | ``GCC/11.2.0`` -``1.8.2`` | ``foss/2021b`` ``1.8.2`` | ``foss/2022a`` ``2.0.1`` | ``foss/2022b`` ``2.0.1`` | ``gfbf/2023a`` diff --git a/docs/version-specific/supported-software/s/Siesta.md b/docs/version-specific/supported-software/s/Siesta.md index 79091de8e1..c70141570d 100644 --- a/docs/version-specific/supported-software/s/Siesta.md +++ b/docs/version-specific/supported-software/s/Siesta.md @@ -10,7 +10,6 @@ SIESTA is both a method and its computer program implementation, to perform effi version | versionsuffix | toolchain --------|---------------|---------- -``4.1.5`` | | ``foss/2021b`` ``4.1.5`` | | ``foss/2022a`` ``4.1.5`` | | ``intel/2022a`` ``5.2.2`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/s/SignalP.md b/docs/version-specific/supported-software/s/SignalP.md index 46fed3aba5..c5c32106f4 100644 --- a/docs/version-specific/supported-software/s/SignalP.md +++ b/docs/version-specific/supported-software/s/SignalP.md @@ -10,7 +10,6 @@ SignalP predicts the presence and location of signal peptide cleavage sites i version | versionsuffix | toolchain --------|---------------|---------- -``6.0g`` | ``-fast`` | ``foss/2021b`` ``6.0g`` | ``-fast-CUDA-11.7.0`` | ``foss/2022a`` ``6.0g`` | ``-fast`` | ``foss/2022a`` ``6.0h`` | ``-fast`` | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/s/SimPEG.md b/docs/version-specific/supported-software/s/SimPEG.md deleted file mode 100644 index 3cd15e5018..0000000000 --- a/docs/version-specific/supported-software/s/SimPEG.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SimPEG - -An open source Python package for simulation and gradient based parameter estimation in geophysical applications. - -*homepage*: - -version | toolchain ---------|---------- -``0.18.1`` | ``foss/2021b`` -``0.18.1`` | ``intel/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Simbody.md b/docs/version-specific/supported-software/s/Simbody.md new file mode 100644 index 0000000000..3772a21b11 --- /dev/null +++ b/docs/version-specific/supported-software/s/Simbody.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Simbody + +Simbody is a high-performance, open-source toolkit for science- and engineering-quality simulation of articulated mechanisms, including biomechanical structures such as human and animal skeletons, mechanical systems like robots, vehicles, and machines, and anything else that can be described as a set of rigid bodies interconnected by joints, influenced by forces and motions, and restricted by constraints. Simbody includes a multibody dynamics library for modeling motion in generalized/internal coordinates in O(n) time. This is sometimes called a Featherstone-style physics engine. Simbody provides a C++ API that is used to build domain-specific applications; it is not a standalone application itself. For example, it is used by biomechanists in OpenSim, by roboticists in Gazebo, and for biomolecular research in MacroMoleculeBuilder (MMB). + +*homepage*: + +version | toolchain +--------|---------- +``3.8`` | ``gfbf/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SimpleITK.md b/docs/version-specific/supported-software/s/SimpleITK.md index 1205a62887..2a78456fb9 100644 --- a/docs/version-specific/supported-software/s/SimpleITK.md +++ b/docs/version-specific/supported-software/s/SimpleITK.md @@ -10,7 +10,6 @@ SimpleITK is a simplified programming interface to the algorithms and data struc version | toolchain --------|---------- -``2.1.1.2`` | ``foss/2021b`` ``2.1.1.2`` | ``foss/2022a`` ``2.3.1`` | ``foss/2023a`` ``2.5.2`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/s/SlamDunk.md b/docs/version-specific/supported-software/s/SlamDunk.md deleted file mode 100644 index 64148e7de6..0000000000 --- a/docs/version-specific/supported-software/s/SlamDunk.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SlamDunk - -SlamDunk is a novel, fully automated software tool for automated, robust, scalable and reproducible SLAMseq data analysis. - -*homepage*: - -version | toolchain ---------|---------- -``0.4.3`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SoQt.md b/docs/version-specific/supported-software/s/SoQt.md deleted file mode 100644 index 3392ebddfb..0000000000 --- a/docs/version-specific/supported-software/s/SoQt.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SoQt - -SoQt is a library which provides the glue between Systems in Motion's Coin high-level 3D visualization library and the Qt 2D user interface library. - -*homepage*: - -version | toolchain ---------|---------- -``1.6.0`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SoXt.md b/docs/version-specific/supported-software/s/SoXt.md deleted file mode 100644 index 2fcd272ce2..0000000000 --- a/docs/version-specific/supported-software/s/SoXt.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SoXt - -SoXt is an Xt/Motif glue library for Coin. It can also be used on top of the SGI or TGS implementation of Open Inventor, and is designed to be source code compatible with SGI's InventorXt library. - -*homepage*: - -version | toolchain ---------|---------- -``1.4.0`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/SpaceRanger.md b/docs/version-specific/supported-software/s/SpaceRanger.md index 57fa85e113..c8beb02969 100644 --- a/docs/version-specific/supported-software/s/SpaceRanger.md +++ b/docs/version-specific/supported-software/s/SpaceRanger.md @@ -10,8 +10,6 @@ Space Ranger is a set of analysis pipelines that process Visium spatial RNA-seq version | toolchain --------|---------- -``1.3.1`` | ``GCC/11.2.0`` -``2.0.0`` | ``GCC/11.2.0`` ``2.0.1`` | ``GCC/11.3.0`` ``2.1.0`` | ``GCC/11.3.0`` ``2.1.0`` | ``GCC/12.2.0`` diff --git a/docs/version-specific/supported-software/s/Spack.md b/docs/version-specific/supported-software/s/Spack.md index 36175b6004..50e07cf3fc 100644 --- a/docs/version-specific/supported-software/s/Spack.md +++ b/docs/version-specific/supported-software/s/Spack.md @@ -15,6 +15,7 @@ version | toolchain ``0.17.2`` | ``system`` ``0.21.2`` | ``system`` ``1.0.2`` | ``system`` +``1.1.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Spark.md b/docs/version-specific/supported-software/s/Spark.md index cb905d2d88..3edb5d2dd9 100644 --- a/docs/version-specific/supported-software/s/Spark.md +++ b/docs/version-specific/supported-software/s/Spark.md @@ -10,7 +10,6 @@ Spark is Hadoop MapReduce done in memory version | versionsuffix | toolchain --------|---------------|---------- -``3.2.1`` | | ``foss/2021b`` ``3.3.1`` | | ``foss/2022a`` ``3.5.0`` | | ``foss/2023a`` ``3.5.1`` | ``-Java-17`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/s/SpectrA.md b/docs/version-specific/supported-software/s/SpectrA.md index 7d91939444..c872a71680 100644 --- a/docs/version-specific/supported-software/s/SpectrA.md +++ b/docs/version-specific/supported-software/s/SpectrA.md @@ -10,9 +10,9 @@ Spectra stands for Sparse Eigenvalue Computation Toolkit as a Redesigned ARPACK. version | toolchain --------|---------- -``1.0.1`` | ``GCCcore/11.2.0`` ``1.0.1`` | ``GCCcore/11.3.0`` ``1.0.1`` | ``GCCcore/12.3.0`` +``1.2.0`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Sphinx-RTD-Theme.md b/docs/version-specific/supported-software/s/Sphinx-RTD-Theme.md index f9b5f54f56..2c2f422ca1 100644 --- a/docs/version-specific/supported-software/s/Sphinx-RTD-Theme.md +++ b/docs/version-specific/supported-software/s/Sphinx-RTD-Theme.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2.0.0`` | ``GCCcore/12.3.0`` ``2.0.0`` | ``GCCcore/13.2.0`` +``3.1.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/SqueezeMeta.md b/docs/version-specific/supported-software/s/SqueezeMeta.md deleted file mode 100644 index bb7e0f6692..0000000000 --- a/docs/version-specific/supported-software/s/SqueezeMeta.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# SqueezeMeta - -SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. - -*homepage*: - -version | toolchain ---------|---------- -``1.5.0`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/Squidpy.md b/docs/version-specific/supported-software/s/Squidpy.md index 1846a31e7a..2725391d74 100644 --- a/docs/version-specific/supported-software/s/Squidpy.md +++ b/docs/version-specific/supported-software/s/Squidpy.md @@ -10,8 +10,8 @@ Squidpy is a tool for the analysis and visualization of spatial molecular data. version | toolchain --------|---------- -``1.2.2`` | ``foss/2021b`` ``1.4.1`` | ``foss/2023a`` +``1.6.6`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/StringTie.md b/docs/version-specific/supported-software/s/StringTie.md index 3a202684ae..89bd8d147c 100644 --- a/docs/version-specific/supported-software/s/StringTie.md +++ b/docs/version-specific/supported-software/s/StringTie.md @@ -8,12 +8,10 @@ StringTie is a fast and highly efficient assembler of RNA-Seq alignments into po *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``2.2.1`` | ``-Python-2.7.18`` | ``GCC/11.2.0`` -``2.2.1`` | | ``GCC/11.2.0`` -``2.2.3`` | | ``GCC/12.3.0`` -``3.0.0`` | | ``GCC/13.3.0`` +version | toolchain +--------|---------- +``2.2.3`` | ``GCC/12.3.0`` +``3.0.0`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Subread.md b/docs/version-specific/supported-software/s/Subread.md index 3bf32f91cc..12a5b26f26 100644 --- a/docs/version-specific/supported-software/s/Subread.md +++ b/docs/version-specific/supported-software/s/Subread.md @@ -6,14 +6,14 @@ search: High performance read alignment, quantification and mutation discovery -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.0.3`` | ``GCC/11.2.0`` ``2.0.4`` | ``GCC/11.3.0`` ``2.0.6`` | ``GCC/12.3.0`` ``2.1.1`` | ``GCC/13.2.0`` +``2.1.1`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/Subversion.md b/docs/version-specific/supported-software/s/Subversion.md index c79e826bdf..67d9218fbc 100644 --- a/docs/version-specific/supported-software/s/Subversion.md +++ b/docs/version-specific/supported-software/s/Subversion.md @@ -10,7 +10,6 @@ Subversion is an open source version control system. version | toolchain --------|---------- -``1.14.1`` | ``GCCcore/11.2.0`` ``1.14.2`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/s/SuiteSparse.md b/docs/version-specific/supported-software/s/SuiteSparse.md index 6221c689e8..25fdd56c1a 100644 --- a/docs/version-specific/supported-software/s/SuiteSparse.md +++ b/docs/version-specific/supported-software/s/SuiteSparse.md @@ -10,13 +10,12 @@ SuiteSparse is a collection of libraries manipulate sparse matrices. version | versionsuffix | toolchain --------|---------------|---------- -``5.10.1`` | ``-METIS-5.1.0`` | ``foss/2021b`` -``5.10.1`` | ``-METIS-5.1.0`` | ``intel/2021b`` ``5.13.0`` | ``-METIS-5.1.0`` | ``foss/2022a`` ``5.13.0`` | ``-METIS-5.1.0`` | ``foss/2022b`` ``7.1.0`` | | ``foss/2023a`` ``7.10.1`` | | ``foss/2024a`` ``7.10.3`` | | ``foss/2025a`` +``7.11.0`` | ``-METIS-5.1.0`` | ``foss/2025b`` ``7.11.0`` | | ``gfbf/2025b`` ``7.7.0`` | | ``foss/2023b`` ``7.7.0`` | | ``gfbf/2023b`` diff --git a/docs/version-specific/supported-software/s/SvABA.md b/docs/version-specific/supported-software/s/SvABA.md new file mode 100644 index 0000000000..8808945acc --- /dev/null +++ b/docs/version-specific/supported-software/s/SvABA.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# SvABA + +SvABA - Structural variation and indel analysis by assembly + +*homepage*: + +version | toolchain +--------|---------- +``1.3.0`` | ``GCC/14.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/SymFPU.md b/docs/version-specific/supported-software/s/SymFPU.md new file mode 100644 index 0000000000..fdb96a4af0 --- /dev/null +++ b/docs/version-specific/supported-software/s/SymFPU.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# SymFPU + +A (concrete or symbolic) implementation of IEEE-754 / SMT-LIB floating-point. + +*homepage*: + +version | toolchain +--------|---------- +``20190518`` | ``GCCcore/14.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/Szip.md b/docs/version-specific/supported-software/s/Szip.md index 2123d05118..2abfdad66b 100644 --- a/docs/version-specific/supported-software/s/Szip.md +++ b/docs/version-specific/supported-software/s/Szip.md @@ -10,7 +10,6 @@ Szip compression software, providing lossless compression of scientific data version | toolchain --------|---------- -``2.1.1`` | ``GCCcore/11.2.0`` ``2.1.1`` | ``GCCcore/11.3.0`` ``2.1.1`` | ``GCCcore/12.2.0`` ``2.1.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/s/index.md b/docs/version-specific/supported-software/s/index.md index a7f9d2d5f6..c2ba179eb5 100644 --- a/docs/version-specific/supported-software/s/index.md +++ b/docs/version-specific/supported-software/s/index.md @@ -9,6 +9,7 @@ search: * [s3fs](s3fs.md) + * [s9s](s9s.md) * [Sabre](Sabre.md) * [safestringlib](safestringlib.md) * [Safetensors](Safetensors.md) @@ -18,7 +19,6 @@ search: * [Sambamba](Sambamba.md) * [samblaster](samblaster.md) * [samclip](samclip.md) - * [samplot](samplot.md) * [SAMtools](SAMtools.md) * [SAP](SAP.md) * [Satsuma2](Satsuma2.md) @@ -41,7 +41,6 @@ search: * [SCENIC](SCENIC.md) * [SCENICplus](SCENICplus.md) * [scFEA](scFEA.md) - * [SCGid](SCGid.md) * [scGSVA](scGSVA.md) * [schemdraw](schemdraw.md) * [scHiCExplorer](scHiCExplorer.md) @@ -58,17 +57,18 @@ search: * [scikit-learn](scikit-learn.md) * [scikit-lego](scikit-lego.md) * [scikit-misc](scikit-misc.md) + * [scikit-multimodallearn](scikit-multimodallearn.md) * [scikit-optimize](scikit-optimize.md) * [scikit-plot](scikit-plot.md) * [SCIP](SCIP.md) * [SciPy-bundle](SciPy-bundle.md) * [SciTools-Iris](SciTools-Iris.md) * [scNanoGPS](scNanoGPS.md) + * [SCONE](SCONE.md) * [SCons](SCons.md) * [SCopeLoomR](SCopeLoomR.md) * [Score-P](Score-P.md) * [SCOTCH](SCOTCH.md) - * [scPred](scPred.md) * [SCReadCounts](SCReadCounts.md) * [screen](screen.md) * [SCRIPro](SCRIPro.md) @@ -87,17 +87,18 @@ search: * [Seaborn](Seaborn.md) * [SEACR](SEACR.md) * [SearchGUI](SearchGUI.md) - * [SeaView](SeaView.md) + * [seatd](seatd.md) * [segemehl](segemehl.md) * [segment-anything](segment-anything.md) * [segmentation-models-pytorch](segmentation-models-pytorch.md) * [SeisSol](SeisSol.md) - * [SELFIES](SELFIES.md) * [SemiBin](SemiBin.md) * [semla](semla.md) * [sensormotion](sensormotion.md) + * [Sentaurus](Sentaurus.md) * [Sentence-Transformers](Sentence-Transformers.md) * [SentencePiece](SentencePiece.md) + * [sentieon-genomics](sentieon-genomics.md) * [sentinelsat](sentinelsat.md) * [SEPP](SEPP.md) * [SeqAn](SeqAn.md) @@ -112,24 +113,21 @@ search: * [SeuratDisk](SeuratDisk.md) * [SeuratWrappers](SeuratWrappers.md) * [SHAP](SHAP.md) + * [SHAPEIT5](SHAPEIT5.md) * [Shapely](Shapely.md) * [ShapeMapper2](ShapeMapper2.md) * [shared-mime-info](shared-mime-info.md) * [SharedMeatAxe](SharedMeatAxe.md) * [ShengBTE](ShengBTE.md) - * [Short-Pair](Short-Pair.md) * [shovill](shovill.md) * [shrinkwrap](shrinkwrap.md) - * [SHTns](SHTns.md) * [Siesta](Siesta.md) * [SignalP](SignalP.md) * [silhouetteRank](silhouetteRank.md) - * [silx](silx.md) * [simanneal](simanneal.md) + * [Simbody](Simbody.md) * [simde](simde.md) - * [simint](simint.md) * [SimNIBS](SimNIBS.md) - * [SimPEG](SimPEG.md) * [Simple-DFTD3](Simple-DFTD3.md) * [SimpleITK](SimpleITK.md) * [simplification](simplification.md) @@ -144,16 +142,12 @@ search: * [sirocco](sirocco.md) * [siscone](siscone.md) * [sisl](sisl.md) - * [SISSO](SISSO.md) - * [SISSO++](SISSO++.md) * [SKA](SKA.md) * [SKA2](SKA2.md) * [skani](skani.md) * [SKESA](SKESA.md) - * [sklearn-pandas](sklearn-pandas.md) * [skorch](skorch.md) * [sktime](sktime.md) - * [SlamDunk](SlamDunk.md) * [SLEPc](SLEPc.md) * [slepc4py](slepc4py.md) * [sleuth](sleuth.md) @@ -161,7 +155,6 @@ search: * [Slideflow](Slideflow.md) * [SLiM](SLiM.md) * [slirp4netns](slirp4netns.md) - * [slow5tools](slow5tools.md) * [slurm-drmaa](slurm-drmaa.md) * [SlurmViewer](SlurmViewer.md) * [smafa](smafa.md) @@ -174,14 +167,12 @@ search: * [snakemake](snakemake.md) * [SNAP](SNAP.md) * [SNAP-ESA](SNAP-ESA.md) - * [SNAP-ESA-python](SNAP-ESA-python.md) * [SNAP-HMM](SNAP-HMM.md) * [SnapATAC2](SnapATAC2.md) * [SNAPE-pooled](SNAPE-pooled.md) * [snappy](snappy.md) * [Sniffles](Sniffles.md) * [snipit](snipit.md) - * [snippy](snippy.md) * [snp-dists](snp-dists.md) * [snp-sites](snp-sites.md) * [snpEff](snpEff.md) @@ -189,15 +180,14 @@ search: * [soapcheckr](soapcheckr.md) * [SOAPdenovo-Trans](SOAPdenovo-Trans.md) * [SOCI](SOCI.md) + * [SOD](SOD.md) * [Solids4foam](Solids4foam.md) * [solo](solo.md) * [sonic](sonic.md) * [SONIC-bio](SONIC-bio.md) * [SoPlex](SoPlex.md) - * [SoQt](SoQt.md) * [SoupX](SoupX.md) * [SoX](SoX.md) - * [SoXt](SoXt.md) * [SpaceBF](SpaceBF.md) * [SpaceRanger](SpaceRanger.md) * [spacexr](spacexr.md) @@ -207,6 +197,7 @@ search: * [SPAdes](SPAdes.md) * [SpaGene](SpaGene.md) * [spaln](spaln.md) + * [SPAM](SPAM.md) * [span-lite](span-lite.md) * [Spark](Spark.md) * [sparse-neighbors-search](sparse-neighbors-search.md) @@ -221,6 +212,7 @@ search: * [SpFFT](SpFFT.md) * [spglib](spglib.md) * [spglib-python](spglib-python.md) + * [SPH-EXA](SPH-EXA.md) * [Sphinx-RTD-Theme](Sphinx-RTD-Theme.md) * [SpiecEasi](SpiecEasi.md) * [spin](spin.md) @@ -228,14 +220,12 @@ search: * [SPM](SPM.md) * [spoa](spoa.md) * [SPOOLES](SPOOLES.md) - * [SPOTPY](SPOTPY.md) * [SPRNG](SPRNG.md) * [Spyder](Spyder.md) * [sPyRMSD](sPyRMSD.md) * [SQLAlchemy](SQLAlchemy.md) * [SQLite](SQLite.md) * [squashfs-tools](squashfs-tools.md) - * [SqueezeMeta](SqueezeMeta.md) * [SQUID](SQUID.md) * [Squidpy](Squidpy.md) * [SQuIRE](SQuIRE.md) @@ -255,15 +245,14 @@ search: * [Stata](Stata.md) * [Statistics-R](Statistics-R.md) * [statsmodels](statsmodels.md) - * [STEAK](STEAK.md) * [Stellarscope](Stellarscope.md) * [STITCH](STITCH.md) * [stpipeline](stpipeline.md) * [strace](strace.md) * [Strainberry](Strainberry.md) * [STREAM](STREAM.md) + * [STREAmS](STREAmS.md) * [StringTie](StringTie.md) - * [STRique](STRique.md) * [Structure](Structure.md) * [Structure_threader](Structure_threader.md) * [STRUMPACK](STRUMPACK.md) @@ -281,22 +270,27 @@ search: * [SUPPA](SUPPA.md) * [Suppressor](Suppressor.md) * [SURVIVOR](SURVIVOR.md) + * [SvABA](SvABA.md) * [SVclone](SVclone.md) * [SVDSS2](SVDSS2.md) * [SVG](SVG.md) * [SVIM](SVIM.md) * [svist4get](svist4get.md) * [SVT-AV1](SVT-AV1.md) + * [SWASH](SWASH.md) + * [sway](sway.md) * [SWI-Prolog](SWI-Prolog.md) * [SWIG](SWIG.md) * [SymEngine](SymEngine.md) * [SymEngine-python](SymEngine-python.md) + * [SymFPU](SymFPU.md) * [SYMMETRICA](SYMMETRICA.md) * [SYMPHONY](SYMPHONY.md) * [sympy](sympy.md) * [synapseclient](synapseclient.md) * [synthcity](synthcity.md) * [sysbench](sysbench.md) + * [SYSMOIC](SYSMOIC.md) * [Szip](Szip.md) diff --git a/docs/version-specific/supported-software/f/FastQTL.md b/docs/version-specific/supported-software/s/s9s.md similarity index 86% rename from docs/version-specific/supported-software/f/FastQTL.md rename to docs/version-specific/supported-software/s/s9s.md index 9af4a0a6a3..87beaa8de6 100644 --- a/docs/version-specific/supported-software/f/FastQTL.md +++ b/docs/version-specific/supported-software/s/s9s.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# FastQTL +# s9s -FastQTL is a QTL mapper +s9s - Terminal UI for SLURM -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.184`` | ``GCC/11.2.0`` +``0.6.2`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/safestringlib.md b/docs/version-specific/supported-software/s/safestringlib.md index bbb13b8103..30d4bce663 100644 --- a/docs/version-specific/supported-software/s/safestringlib.md +++ b/docs/version-specific/supported-software/s/safestringlib.md @@ -10,7 +10,6 @@ The Secure Development Lifecycle (SDL) recommends banning certain C Library func version | toolchain --------|---------- -``20240228`` | ``GCC/11.2.0`` ``20240228`` | ``GCC/13.3.0`` ``20240228`` | ``intel-compilers/2023.1.0`` ``20241021`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/s/samclip.md b/docs/version-specific/supported-software/s/samclip.md index 2d7b08e8bc..dce7540d5c 100644 --- a/docs/version-specific/supported-software/s/samclip.md +++ b/docs/version-specific/supported-software/s/samclip.md @@ -10,7 +10,6 @@ Filter SAM file for soft and hard clipped alignments. version | toolchain --------|---------- -``0.4.0`` | ``GCCcore/11.2.0`` ``0.4.0`` | ``GCCcore/12.3.0`` ``0.4.0`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/s/samplot.md b/docs/version-specific/supported-software/s/samplot.md deleted file mode 100644 index 807203bb8c..0000000000 --- a/docs/version-specific/supported-software/s/samplot.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# samplot - -Plot structural variant signals from many BAMs and CRAMs. - -*homepage*: - -version | toolchain ---------|---------- -``1.3.0`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/savvy.md b/docs/version-specific/supported-software/s/savvy.md index 1ea48e7ae6..3ac8bb45b7 100644 --- a/docs/version-specific/supported-software/s/savvy.md +++ b/docs/version-specific/supported-software/s/savvy.md @@ -11,6 +11,7 @@ Interface to various variant calling formats. version | toolchain --------|---------- ``2.1.0`` | ``GCC/12.3.0`` +``2.1.0`` | ``GCC/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scArches.md b/docs/version-specific/supported-software/s/scArches.md index a04123253c..a97d56c146 100644 --- a/docs/version-specific/supported-software/s/scArches.md +++ b/docs/version-specific/supported-software/s/scArches.md @@ -12,6 +12,8 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.6.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``0.6.1`` | | ``foss/2023a`` +``0.6.1`` | ``-CUDA-12.6.0`` | ``foss/2024a`` +``0.6.1`` | | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scCODA.md b/docs/version-specific/supported-software/s/scCODA.md index aaf3f9d960..a1ba43b4a0 100644 --- a/docs/version-specific/supported-software/s/scCODA.md +++ b/docs/version-specific/supported-software/s/scCODA.md @@ -11,6 +11,7 @@ scCODA allows for identification of compositional changes in high-throughput seq version | toolchain --------|---------- ``0.1.9`` | ``foss/2023a`` +``0.1.9`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scPred.md b/docs/version-specific/supported-software/s/scPred.md deleted file mode 100644 index 8519059ae2..0000000000 --- a/docs/version-specific/supported-software/s/scPred.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# scPred - -scPred package for cell type prediction from scRNA-seq data - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.9.2`` | ``-R-4.1.2`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/scVelo.md b/docs/version-specific/supported-software/s/scVelo.md index 5f9287eff3..5ae4be0ebc 100644 --- a/docs/version-specific/supported-software/s/scVelo.md +++ b/docs/version-specific/supported-software/s/scVelo.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.2.5`` | ``foss/2022a`` ``0.3.1`` | ``foss/2023a`` +``0.3.4`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scanpy.md b/docs/version-specific/supported-software/s/scanpy.md index 3c9a80eaf2..f48a8afd8f 100644 --- a/docs/version-specific/supported-software/s/scanpy.md +++ b/docs/version-specific/supported-software/s/scanpy.md @@ -12,8 +12,6 @@ version | toolchain --------|---------- ``1.10.4`` | ``foss/2024a`` ``1.11.4`` | ``foss/2025a`` -``1.8.2`` | ``foss/2021b`` -``1.9.1`` | ``foss/2021b`` ``1.9.1`` | ``foss/2022a`` ``1.9.8`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/s/scib-metrics.md b/docs/version-specific/supported-software/s/scib-metrics.md index 32bdca69cc..bc0639ac18 100644 --- a/docs/version-specific/supported-software/s/scib-metrics.md +++ b/docs/version-specific/supported-software/s/scib-metrics.md @@ -12,6 +12,8 @@ version | versionsuffix | toolchain --------|---------------|---------- ``0.5.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``0.5.1`` | | ``foss/2023a`` +``0.5.9`` | ``-CUDA-12.6.0`` | ``foss/2024a`` +``0.5.9`` | | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scib.md b/docs/version-specific/supported-software/s/scib.md index 5aa9925a1e..2ccdafd66f 100644 --- a/docs/version-specific/supported-software/s/scib.md +++ b/docs/version-specific/supported-software/s/scib.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``1.1.1`` | ``foss/2022a`` ``1.1.4`` | ``foss/2023a`` +``1.1.7`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scikit-bio.md b/docs/version-specific/supported-software/s/scikit-bio.md index d02b5d2f77..9013a81df6 100644 --- a/docs/version-specific/supported-software/s/scikit-bio.md +++ b/docs/version-specific/supported-software/s/scikit-bio.md @@ -10,10 +10,11 @@ scikit-bio is an open-source, BSD-licensed Python 3 package providing data struc version | toolchain --------|---------- -``0.5.7`` | ``foss/2021b`` ``0.5.7`` | ``foss/2022a`` ``0.6.0`` | ``foss/2023a`` ``0.6.2`` | ``foss/2023b`` +``0.6.3`` | ``foss/2024a`` +``0.7.1.post1`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scikit-build.md b/docs/version-specific/supported-software/s/scikit-build.md index 8527b67af8..9f21d70526 100644 --- a/docs/version-specific/supported-software/s/scikit-build.md +++ b/docs/version-specific/supported-software/s/scikit-build.md @@ -10,8 +10,6 @@ Scikit-Build, or skbuild, is an improved build system generator for CPython C/C+ version | toolchain --------|---------- -``0.11.1`` | ``GCCcore/11.2.0`` -``0.15.0`` | ``GCCcore/11.2.0`` ``0.15.0`` | ``GCCcore/11.3.0`` ``0.17.2`` | ``GCCcore/12.2.0`` ``0.17.6`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/s/scikit-image.md b/docs/version-specific/supported-software/s/scikit-image.md index f3cd342a53..a1377bc466 100644 --- a/docs/version-specific/supported-software/s/scikit-image.md +++ b/docs/version-specific/supported-software/s/scikit-image.md @@ -10,7 +10,6 @@ scikit-image is a collection of algorithms for image processing. version | toolchain --------|---------- -``0.19.1`` | ``foss/2021b`` ``0.19.3`` | ``foss/2022a`` ``0.21.0`` | ``foss/2022b`` ``0.22.0`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/s/scikit-learn.md b/docs/version-specific/supported-software/s/scikit-learn.md index 7d6d22013b..f13971c9a5 100644 --- a/docs/version-specific/supported-software/s/scikit-learn.md +++ b/docs/version-specific/supported-software/s/scikit-learn.md @@ -10,11 +10,7 @@ Scikit-learn integrates machine learning algorithms in the tightly-knit scientif version | versionsuffix | toolchain --------|---------------|---------- -``0.20.4`` | ``-Python-2.7.18`` | ``foss/2021b`` ``0.20.4`` | ``-Python-2.7.18`` | ``foss/2023a`` -``1.0.1`` | | ``foss/2021b`` -``1.0.1`` | | ``intel/2021b`` -``1.0.2`` | | ``foss/2021b`` ``1.1.2`` | | ``foss/2022a`` ``1.1.2`` | | ``intel/2022a`` ``1.2.1`` | | ``gfbf/2022b`` diff --git a/docs/version-specific/supported-software/s/scikit-misc.md b/docs/version-specific/supported-software/s/scikit-misc.md index 0573850b6e..111a0c5bd1 100644 --- a/docs/version-specific/supported-software/s/scikit-misc.md +++ b/docs/version-specific/supported-software/s/scikit-misc.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.1.4`` | ``foss/2022a`` ``0.3.1`` | ``foss/2023a`` +``0.5.1`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/scikit-multimodallearn.md b/docs/version-specific/supported-software/s/scikit-multimodallearn.md new file mode 100644 index 0000000000..5094d9bdf9 --- /dev/null +++ b/docs/version-specific/supported-software/s/scikit-multimodallearn.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# scikit-multimodallearn + +scikit-multimodallearn is a Python package implementing algorithms multimodal data. + +*homepage*: + +version | toolchain +--------|---------- +``0.1.0`` | ``foss/2025a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/scrublet.md b/docs/version-specific/supported-software/s/scrublet.md index 8f69e1c88d..c20a3a2a87 100644 --- a/docs/version-specific/supported-software/s/scrublet.md +++ b/docs/version-specific/supported-software/s/scrublet.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``0.2.3`` | ``foss/2022a`` ``0.2.3`` | ``foss/2023a`` +``0.2.3`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/seatd.md b/docs/version-specific/supported-software/s/seatd.md new file mode 100644 index 0000000000..3118aba5bf --- /dev/null +++ b/docs/version-specific/supported-software/s/seatd.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# seatd + +A minimal seat management daemon, and a universal seat management library. + +*homepage*: + +version | toolchain +--------|---------- +``0.9.2`` | ``GCCcore/14.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/segemehl.md b/docs/version-specific/supported-software/s/segemehl.md index 6986fb13f6..16ea6c6987 100644 --- a/docs/version-specific/supported-software/s/segemehl.md +++ b/docs/version-specific/supported-software/s/segemehl.md @@ -10,7 +10,6 @@ segemehl is a software to map short sequencer reads to reference genomes. Unlik version | toolchain --------|---------- -``0.3.4`` | ``GCC/11.2.0`` ``0.3.4`` | ``GCC/14.3.0`` diff --git a/docs/version-specific/supported-software/s/sentieon-genomics.md b/docs/version-specific/supported-software/s/sentieon-genomics.md new file mode 100644 index 0000000000..46270d62a6 --- /dev/null +++ b/docs/version-specific/supported-software/s/sentieon-genomics.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# sentieon-genomics + +Sentieon Genomics is a proprietary toolkit for fast and accurate processing of next-generation sequencing data, including variant calling and related analysis workflows. Use of this software requires a valid Sentieon license. + +*homepage*: + +version | toolchain +--------|---------- +``202503.02`` | ``system`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/seqtk.md b/docs/version-specific/supported-software/s/seqtk.md index e739552943..722f1a0db1 100644 --- a/docs/version-specific/supported-software/s/seqtk.md +++ b/docs/version-specific/supported-software/s/seqtk.md @@ -10,7 +10,6 @@ Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FA version | toolchain --------|---------- -``1.3`` | ``GCC/11.2.0`` ``1.3`` | ``GCC/11.3.0`` ``1.4`` | ``GCC/12.2.0`` ``1.4`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/s/shovill.md b/docs/version-specific/supported-software/s/shovill.md index c1d0cbfcb5..9963f9712a 100644 --- a/docs/version-specific/supported-software/s/shovill.md +++ b/docs/version-specific/supported-software/s/shovill.md @@ -10,7 +10,6 @@ Faster SPAdes assembly of Illumina reads version | toolchain --------|---------- -``1.1.0`` | ``gompi/2021b`` ``1.1.0`` | ``gompi/2024a`` diff --git a/docs/version-specific/supported-software/s/shrinkwrap.md b/docs/version-specific/supported-software/s/shrinkwrap.md index 16114b2735..73de975a89 100644 --- a/docs/version-specific/supported-software/s/shrinkwrap.md +++ b/docs/version-specific/supported-software/s/shrinkwrap.md @@ -11,6 +11,7 @@ A std::streambuf wrapper for compression formats. version | toolchain --------|---------- ``1.2.0`` | ``GCCcore/12.3.0`` +``1.2.0`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/silx.md b/docs/version-specific/supported-software/s/silx.md deleted file mode 100644 index 24450034f4..0000000000 --- a/docs/version-specific/supported-software/s/silx.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# silx - -The silx project provides a collection of Python packages to support the development of data assessment, reduction and analysis applications at synchrotron radiation facilities. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.0`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/simint.md b/docs/version-specific/supported-software/s/simint.md deleted file mode 100644 index 4c44b9ccdd..0000000000 --- a/docs/version-specific/supported-software/s/simint.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# simint - -Simint is a vectorized implementation of the Obara-Saika (OS) method of calculating electron repulsion integrals. Speedup is gained by vectorizing the primitive loop of the OS algorithm, with additional vectorization and optimizations left to the compiler. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``0.7`` | ``-lmax-5-vec-avx-psi4`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/sklearn-pandas.md b/docs/version-specific/supported-software/s/sklearn-pandas.md deleted file mode 100644 index a458f15cc6..0000000000 --- a/docs/version-specific/supported-software/s/sklearn-pandas.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# sklearn-pandas - -This module provides a bridge between Scikit-Learn's machine learning methods and pandas-style Data Frames. In particular, it provides a way to map DataFrame columns to transformations, which are later recombined into features. - -*homepage*: - -version | toolchain ---------|---------- -``2.2.0`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/smithwaterman.md b/docs/version-specific/supported-software/s/smithwaterman.md index 19915e067e..9cbbaa454b 100644 --- a/docs/version-specific/supported-software/s/smithwaterman.md +++ b/docs/version-specific/supported-software/s/smithwaterman.md @@ -10,7 +10,6 @@ smith-waterman-gotoh alignment algorithm. version | toolchain --------|---------- -``20160702`` | ``GCCcore/11.2.0`` ``20160702`` | ``GCCcore/11.3.0`` ``20160702`` | ``GCCcore/12.2.0`` ``20160702`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/s/snakemake.md b/docs/version-specific/supported-software/s/snakemake.md index 7239d06c86..1dcf93535c 100644 --- a/docs/version-specific/supported-software/s/snakemake.md +++ b/docs/version-specific/supported-software/s/snakemake.md @@ -10,8 +10,6 @@ The Snakemake workflow management system is a tool to create reproducible and sc version | toolchain --------|---------- -``6.10.0`` | ``foss/2021b`` -``7.18.2`` | ``foss/2021b`` ``7.22.0`` | ``foss/2022a`` ``7.32.3`` | ``foss/2022b`` ``8.27.0`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/s/snappy.md b/docs/version-specific/supported-software/s/snappy.md index d8f2921019..da5964e34e 100644 --- a/docs/version-specific/supported-software/s/snappy.md +++ b/docs/version-specific/supported-software/s/snappy.md @@ -13,7 +13,6 @@ version | toolchain ``1.1.10`` | ``GCCcore/12.3.0`` ``1.1.10`` | ``GCCcore/13.2.0`` ``1.1.10`` | ``GCCcore/13.3.0`` -``1.1.9`` | ``GCCcore/11.2.0`` ``1.1.9`` | ``GCCcore/11.3.0`` ``1.1.9`` | ``GCCcore/12.2.0`` ``1.2.1`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/s/snipit.md b/docs/version-specific/supported-software/s/snipit.md index 82aa4e7c39..dd28014755 100644 --- a/docs/version-specific/supported-software/s/snipit.md +++ b/docs/version-specific/supported-software/s/snipit.md @@ -11,6 +11,7 @@ snipit: summarise snps relative to your reference sequence version | toolchain --------|---------- ``1.6`` | ``foss/2023a`` +``1.6`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/snippy.md b/docs/version-specific/supported-software/s/snippy.md deleted file mode 100644 index af8dd33605..0000000000 --- a/docs/version-specific/supported-software/s/snippy.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# snippy - -Rapid haploid variant calling and core genome alignment - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.6.0`` | ``-R-4.1.2`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/s/snp-sites.md b/docs/version-specific/supported-software/s/snp-sites.md index e10bd35f4d..ae9da354df 100644 --- a/docs/version-specific/supported-software/s/snp-sites.md +++ b/docs/version-specific/supported-software/s/snp-sites.md @@ -10,8 +10,8 @@ Finds SNP sites from a multi-FASTA alignment file. version | toolchain --------|---------- -``2.5.1`` | ``GCCcore/11.2.0`` ``2.5.1`` | ``GCCcore/12.3.0`` +``2.5.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/snpEff.md b/docs/version-specific/supported-software/s/snpEff.md index 762ef5a82c..6b35b7d6c4 100644 --- a/docs/version-specific/supported-software/s/snpEff.md +++ b/docs/version-specific/supported-software/s/snpEff.md @@ -10,9 +10,9 @@ SnpEff is a variant annotation and effect prediction tool. It annotates and pre version | versionsuffix | toolchain --------|---------------|---------- -``5.0e`` | ``-Java-11`` | ``GCCcore/11.2.0`` ``5.2c`` | ``-Java-11`` | ``GCCcore/12.2.0`` ``5.2c`` | ``-Java-11`` | ``GCCcore/12.3.0`` +``5.4c`` | ``-Java-21`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/spaln.md b/docs/version-specific/supported-software/s/spaln.md index ae7874bf0c..dfefb09e13 100644 --- a/docs/version-specific/supported-software/s/spaln.md +++ b/docs/version-specific/supported-software/s/spaln.md @@ -10,7 +10,6 @@ Spaln (space-efficient spliced alignment) is a stand-alone program that maps an version | toolchain --------|---------- -``2.4.12`` | ``GCC/11.2.0`` ``2.4.13f`` | ``GCC/11.3.0`` ``3.0.6b`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/s/sparsehash.md b/docs/version-specific/supported-software/s/sparsehash.md index 2f6fe7ac02..e90f7146a5 100644 --- a/docs/version-specific/supported-software/s/sparsehash.md +++ b/docs/version-specific/supported-software/s/sparsehash.md @@ -13,6 +13,7 @@ version | toolchain ``2.0.4`` | ``GCCcore/11.3.0`` ``2.0.4`` | ``GCCcore/12.3.0`` ``2.0.4`` | ``GCCcore/13.3.0`` +``2.0.4`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/spdlog.md b/docs/version-specific/supported-software/s/spdlog.md index 3a54f93405..4f9734fa5e 100644 --- a/docs/version-specific/supported-software/s/spdlog.md +++ b/docs/version-specific/supported-software/s/spdlog.md @@ -10,7 +10,6 @@ Very fast, header-only/compiled, C++ logging library. version | toolchain --------|---------- -``1.10.0`` | ``GCCcore/11.2.0`` ``1.11.0`` | ``GCCcore/12.2.0`` ``1.11.0`` | ``GCCcore/12.3.0`` ``1.12.0`` | ``GCCcore/13.2.0`` @@ -18,6 +17,7 @@ version | toolchain ``1.15.3`` | ``GCCcore/13.3.0`` ``1.15.3`` | ``GCCcore/14.2.0`` ``1.15.3`` | ``GCCcore/14.3.0`` +``1.4.1`` | ``GCCcore/13.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/spektral.md b/docs/version-specific/supported-software/s/spektral.md index 54cebd1abf..bcfa6c3cd7 100644 --- a/docs/version-specific/supported-software/s/spektral.md +++ b/docs/version-specific/supported-software/s/spektral.md @@ -4,13 +4,12 @@ search: --- # spektral -Spektral is a Python library for graph deep learning. The main goal of this project is to provide a simple but flexible framework for creating graph neural networks (GNNs). +Spektral is a Python library for graph deep learning, based on the Keras API and TensorFlow 2 -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.1.0`` | ``-CUDA-11.4.1`` | ``foss/2021b`` ``1.3.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``1.3.1`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/s/spglib-python.md b/docs/version-specific/supported-software/s/spglib-python.md index b1d87d2268..b9367634a7 100644 --- a/docs/version-specific/supported-software/s/spglib-python.md +++ b/docs/version-specific/supported-software/s/spglib-python.md @@ -10,8 +10,6 @@ Spglib for Python. Spglib is a library for finding and handling crystal symmetri version | toolchain --------|---------- -``1.16.3`` | ``foss/2021b`` -``1.16.3`` | ``intel/2021b`` ``2.0.0`` | ``foss/2022a`` ``2.0.0`` | ``intel/2022a`` ``2.0.2`` | ``gfbf/2022b`` diff --git a/docs/version-specific/supported-software/s/spoa.md b/docs/version-specific/supported-software/s/spoa.md index 715862294e..1b1edb8850 100644 --- a/docs/version-specific/supported-software/s/spoa.md +++ b/docs/version-specific/supported-software/s/spoa.md @@ -10,7 +10,6 @@ Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) alg version | toolchain --------|---------- -``4.0.7`` | ``GCC/11.2.0`` ``4.0.7`` | ``GCC/11.3.0`` ``4.0.7`` | ``GCC/12.2.0`` ``4.1.0`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/s/stardist.md b/docs/version-specific/supported-software/s/stardist.md index dfb3f8307b..f1d50f09a1 100644 --- a/docs/version-specific/supported-software/s/stardist.md +++ b/docs/version-specific/supported-software/s/stardist.md @@ -8,11 +8,10 @@ Object Detection with Star-convex Shapes. *homepage*: -version | versionsuffix | toolchain ---------|---------------|---------- -``0.8.3`` | ``-CUDA-11.4.1`` | ``foss/2021b`` -``0.8.3`` | | ``foss/2021b`` -``0.8.5`` | | ``foss/2023a`` +version | toolchain +--------|---------- +``0.8.5`` | ``foss/2023a`` +``0.9.1`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/s/statsmodels.md b/docs/version-specific/supported-software/s/statsmodels.md index 9e2595c213..a68742cc10 100644 --- a/docs/version-specific/supported-software/s/statsmodels.md +++ b/docs/version-specific/supported-software/s/statsmodels.md @@ -10,9 +10,7 @@ Statsmodels is a Python module that allows users to explore data, estimate stati version | toolchain --------|---------- -``0.13.1`` | ``foss/2021b`` ``0.13.1`` | ``foss/2022a`` -``0.13.1`` | ``intel/2021b`` ``0.14.0`` | ``gfbf/2022b`` ``0.14.1`` | ``gfbf/2023a`` ``0.14.1`` | ``gfbf/2023b`` diff --git a/docs/version-specific/supported-software/s/strace.md b/docs/version-specific/supported-software/s/strace.md index 5bd5259818..8c3c5d011a 100644 --- a/docs/version-specific/supported-software/s/strace.md +++ b/docs/version-specific/supported-software/s/strace.md @@ -10,7 +10,6 @@ strace is a diagnostic, debugging and instructional userspace utility for Linux. version | toolchain --------|---------- -``5.14`` | ``GCCcore/11.2.0`` ``6.14`` | ``GCCcore/14.2.0`` ``6.14`` | ``GCCcore/14.3.0`` ``6.6`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/s/sway.md b/docs/version-specific/supported-software/s/sway.md new file mode 100644 index 0000000000..5472678500 --- /dev/null +++ b/docs/version-specific/supported-software/s/sway.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# sway + +The Sway i3-compatible Wayland compositor and related projects + +*homepage*: + +version | toolchain +--------|---------- +``1.11`` | ``GCCcore/14.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/s/sympy.md b/docs/version-specific/supported-software/s/sympy.md index b042cc2854..9303640244 100644 --- a/docs/version-specific/supported-software/s/sympy.md +++ b/docs/version-specific/supported-software/s/sympy.md @@ -21,8 +21,6 @@ version | toolchain ``1.13.3`` | ``gfbf/2024a`` ``1.14.0`` | ``gfbf/2025a`` ``1.14.0`` | ``gfbf/2025b`` -``1.9`` | ``foss/2021b`` -``1.9`` | ``intel/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TAMkin.md b/docs/version-specific/supported-software/t/TAMkin.md index 899273a279..2beda77c92 100644 --- a/docs/version-specific/supported-software/t/TAMkin.md +++ b/docs/version-specific/supported-software/t/TAMkin.md @@ -10,7 +10,6 @@ TAMkin is a post-processing toolkit for normal mode analysis, thermochemistry a version | toolchain --------|---------- -``1.2.6`` | ``foss/2021b`` ``1.2.6`` | ``foss/2022a`` ``1.2.6`` | ``foss/2022b`` ``1.2.6`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/t/TCLAP.md b/docs/version-specific/supported-software/t/TCLAP.md index d89a73addb..77952eb71b 100644 --- a/docs/version-specific/supported-software/t/TCLAP.md +++ b/docs/version-specific/supported-software/t/TCLAP.md @@ -10,7 +10,6 @@ TCLAP is a small, flexible library that provides a simple interface for defining version | toolchain --------|---------- -``1.2.5`` | ``GCCcore/11.2.0`` ``1.4.0-rc2`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/t/TELEMAC-MASCARET.md b/docs/version-specific/supported-software/t/TELEMAC-MASCARET.md index fcfab785f2..9c08940aad 100644 --- a/docs/version-specific/supported-software/t/TELEMAC-MASCARET.md +++ b/docs/version-specific/supported-software/t/TELEMAC-MASCARET.md @@ -10,7 +10,6 @@ TELEMAC-MASCARET is an integrated suite of solvers for use in the field of free- version | toolchain --------|---------- -``8p3r1`` | ``foss/2021b`` ``8p5r0`` | ``foss/2023a`` ``9.0.0`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/t/TIDDIT.md b/docs/version-specific/supported-software/t/TIDDIT.md new file mode 100644 index 0000000000..980b54898b --- /dev/null +++ b/docs/version-specific/supported-software/t/TIDDIT.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# TIDDIT + +Tool for identifying chromosomal rearrangements using Mate Pair or Paired End sequencing data. + +*homepage*: + +version | toolchain +--------|---------- +``3.9.3`` | ``foss/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/t/TOBIAS.md b/docs/version-specific/supported-software/t/TOBIAS.md index 3f00d97aac..814bdc12e1 100644 --- a/docs/version-specific/supported-software/t/TOBIAS.md +++ b/docs/version-specific/supported-software/t/TOBIAS.md @@ -4,13 +4,12 @@ search: --- # TOBIAS -TOBIAS is a collection of command-line bioinformatics tools for performing footprinting analysis on ATAC-seq data, and includes: Correction of Tn5 insertion bias; Calculation of footprint scores within regulatory regions; Estimation of bound/unbound transcription factor binding sites; and Visualization of footprints within and across different conditions +TOBIAS is a collection of command-line bioinformatics tools for performing footprinting analysis on ATAC-seq data. *homepage*: version | toolchain --------|---------- -``0.12.12`` | ``foss/2021b`` ``0.16.1`` | ``foss/2022b`` ``0.16.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/t/TOML-Fortran.md b/docs/version-specific/supported-software/t/TOML-Fortran.md index 39b9c6740c..70ebe98c45 100644 --- a/docs/version-specific/supported-software/t/TOML-Fortran.md +++ b/docs/version-specific/supported-software/t/TOML-Fortran.md @@ -10,7 +10,6 @@ TOML parser for Fortran projects version | toolchain --------|---------- -``0.3.1`` | ``GCC/11.2.0`` ``0.3.1`` | ``GCC/11.3.0`` ``0.4.1`` | ``GCC/12.2.0`` ``0.4.1`` | ``intel-compilers/2022.2.1`` diff --git a/docs/version-specific/supported-software/t/TRF.md b/docs/version-specific/supported-software/t/TRF.md index 81a0c60c53..0ec068c8c9 100644 --- a/docs/version-specific/supported-software/t/TRF.md +++ b/docs/version-specific/supported-software/t/TRF.md @@ -10,10 +10,10 @@ Tandem Repeats Finder: a program to analyze DNA sequences. version | toolchain --------|---------- -``4.09.1`` | ``GCCcore/11.2.0`` ``4.09.1`` | ``GCCcore/11.3.0`` ``4.09.1`` | ``GCCcore/12.3.0`` ``4.09.1`` | ``GCCcore/13.3.0`` +``4.09.1`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TRUST4.md b/docs/version-specific/supported-software/t/TRUST4.md index 4044344b1c..a2bfa1773b 100644 --- a/docs/version-specific/supported-software/t/TRUST4.md +++ b/docs/version-specific/supported-software/t/TRUST4.md @@ -11,7 +11,6 @@ Tcr Receptor Utilities for Solid Tissue (TRUST) is a computational tool to analy version | toolchain --------|---------- ``1.0.5.1`` | ``system`` -``1.0.6`` | ``GCC/11.2.0`` ``1.0.7`` | ``GCC/11.3.0`` diff --git a/docs/version-specific/supported-software/t/Tcl.md b/docs/version-specific/supported-software/t/Tcl.md index 235374cef6..dfbb685163 100644 --- a/docs/version-specific/supported-software/t/Tcl.md +++ b/docs/version-specific/supported-software/t/Tcl.md @@ -10,7 +10,6 @@ Tcl (Tool Command Language) is a very powerful but easy to learn dynamic progra version | toolchain --------|---------- -``8.6.11`` | ``GCCcore/11.2.0`` ``8.6.12`` | ``GCCcore/11.3.0`` ``8.6.12`` | ``GCCcore/12.2.0`` ``8.6.13`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/t/TensorFlow-Datasets.md b/docs/version-specific/supported-software/t/TensorFlow-Datasets.md deleted file mode 100644 index ee2630add3..0000000000 --- a/docs/version-specific/supported-software/t/TensorFlow-Datasets.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# TensorFlow-Datasets - -TensorFlow Datasets is a collection of datasets ready to use, with TensorFlow or other Python ML frameworks, such as Jax. All datasets are exposed as tf.data.Datasets , enabling easy-to-use and high-performance input pipelines. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``4.8.3`` | ``-CUDA-11.4.1`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/TensorFlow-Graphics.md b/docs/version-specific/supported-software/t/TensorFlow-Graphics.md deleted file mode 100644 index ce0b5e8baf..0000000000 --- a/docs/version-specific/supported-software/t/TensorFlow-Graphics.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# TensorFlow-Graphics - -Tensorflow Graphics provides a set of differentiable graphics and geometry layers (e.g. cameras, reflectance models, spatial transformations, mesh convolutions) and 3D viewer functionalities (e.g. 3D TensorBoard) that can be used to train and debug your machine learning models of choice. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``2021.12.3`` | ``-CUDA-11.4.1`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/TensorFlow.md b/docs/version-specific/supported-software/t/TensorFlow.md index 097f5928c7..1e4912c3ac 100644 --- a/docs/version-specific/supported-software/t/TensorFlow.md +++ b/docs/version-specific/supported-software/t/TensorFlow.md @@ -19,10 +19,6 @@ version | versionsuffix | toolchain ``2.15.1`` | | ``foss/2023b`` ``2.18.1`` | ``-CUDA-12.6.0`` | ``foss/2024a`` ``2.18.1`` | | ``foss/2024a`` -``2.7.1`` | ``-CUDA-11.4.1`` | ``foss/2021b`` -``2.7.1`` | | ``foss/2021b`` -``2.8.4`` | ``-CUDA-11.4.1`` | ``foss/2021b`` -``2.8.4`` | | ``foss/2021b`` ``2.9.1`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``2.9.1`` | | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/t/Theano.md b/docs/version-specific/supported-software/t/Theano.md deleted file mode 100644 index 19c59697fe..0000000000 --- a/docs/version-specific/supported-software/t/Theano.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Theano - -Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.1.2`` | ``-PyMC`` | ``foss/2021b`` -``1.1.2`` | ``-PyMC`` | ``intel/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/TinyXML.md b/docs/version-specific/supported-software/t/TinyXML.md index c95305e92d..b1f4a3d337 100644 --- a/docs/version-specific/supported-software/t/TinyXML.md +++ b/docs/version-specific/supported-software/t/TinyXML.md @@ -10,7 +10,6 @@ TinyXML is a simple, small, minimal, C++ XML parser that can be easily integrati version | toolchain --------|---------- -``2.6.2`` | ``GCCcore/11.2.0`` ``2.6.2`` | ``GCCcore/11.3.0`` ``2.6.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/t/Tk.md b/docs/version-specific/supported-software/t/Tk.md index c17b446351..1df415e5e3 100644 --- a/docs/version-specific/supported-software/t/Tk.md +++ b/docs/version-specific/supported-software/t/Tk.md @@ -10,7 +10,6 @@ Tk is an open source, cross-platform widget toolchain that provides a library of version | toolchain --------|---------- -``8.6.11`` | ``GCCcore/11.2.0`` ``8.6.12`` | ``GCCcore/11.3.0`` ``8.6.12`` | ``GCCcore/12.2.0`` ``8.6.13`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/t/Tkinter.md b/docs/version-specific/supported-software/t/Tkinter.md index dc6c138f73..c945105ad5 100644 --- a/docs/version-specific/supported-software/t/Tkinter.md +++ b/docs/version-specific/supported-software/t/Tkinter.md @@ -10,7 +10,6 @@ Tkinter module, built with the Python buildsystem version | versionsuffix | toolchain --------|---------------|---------- -``2.7.18`` | | ``GCCcore/11.2.0`` ``2.7.18`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` ``3.10.4`` | | ``GCCcore/11.3.0`` ``3.10.8`` | | ``GCCcore/12.2.0`` @@ -19,7 +18,6 @@ version | versionsuffix | toolchain ``3.12.3`` | | ``GCCcore/13.3.0`` ``3.13.1`` | | ``GCCcore/14.2.0`` ``3.13.5`` | | ``GCCcore/14.3.0`` -``3.9.6`` | | ``GCCcore/11.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/Togl.md b/docs/version-specific/supported-software/t/Togl.md index 97a0d099ed..39ef151e95 100644 --- a/docs/version-specific/supported-software/t/Togl.md +++ b/docs/version-specific/supported-software/t/Togl.md @@ -10,7 +10,6 @@ A Tcl/Tk widget for OpenGL rendering. version | toolchain --------|---------- -``2.0`` | ``GCCcore/11.2.0`` ``2.0`` | ``GCCcore/11.3.0`` ``2.0`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/t/TopHat.md b/docs/version-specific/supported-software/t/TopHat.md index 12b0e876c8..8140fcdbdb 100644 --- a/docs/version-specific/supported-software/t/TopHat.md +++ b/docs/version-specific/supported-software/t/TopHat.md @@ -10,7 +10,6 @@ TopHat is a fast splice junction mapper for RNA-Seq reads. version | versionsuffix | toolchain --------|---------------|---------- -``2.1.2`` | ``-Python-2.7.18`` | ``GCC/11.2.0`` ``2.1.2`` | ``-Python-2.7.18`` | ``GCC/11.3.0`` ``2.1.2`` | ``-Python-2.7.18`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/t/Transformers.md b/docs/version-specific/supported-software/t/Transformers.md index 532508889b..9cfb175c7d 100644 --- a/docs/version-specific/supported-software/t/Transformers.md +++ b/docs/version-specific/supported-software/t/Transformers.md @@ -10,7 +10,6 @@ State-of-the-art Natural Language Processing for PyTorch and TensorFlow 2.0 version | versionsuffix | toolchain --------|---------------|---------- -``4.21.1`` | | ``foss/2021b`` ``4.24.0`` | | ``foss/2022a`` ``4.29.2`` | | ``foss/2022a`` ``4.30.2`` | | ``gfbf/2022b`` @@ -19,6 +18,7 @@ version | versionsuffix | toolchain ``4.55.0`` | ``-tokenizers-0.21.0`` | ``gfbf/2024a`` ``4.55.0`` | | ``gfbf/2024a`` ``4.57.1`` | | ``gfbf/2024a`` +``5.0.0`` | | ``gfbf/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/TreeMix.md b/docs/version-specific/supported-software/t/TreeMix.md index c73e2edd45..50a5e1ab60 100644 --- a/docs/version-specific/supported-software/t/TreeMix.md +++ b/docs/version-specific/supported-software/t/TreeMix.md @@ -10,7 +10,6 @@ TreeMix is a method for inferring the patterns of population splits and mixtures version | toolchain --------|---------- -``1.13`` | ``GCC/11.2.0`` ``1.13`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/t/Trim_Galore.md b/docs/version-specific/supported-software/t/Trim_Galore.md index e0902b0a95..d260ebc1fc 100644 --- a/docs/version-specific/supported-software/t/Trim_Galore.md +++ b/docs/version-specific/supported-software/t/Trim_Galore.md @@ -10,7 +10,6 @@ Trim Galore! is a wrapper script to automate quality and adapter trimming as wel version | versionsuffix | toolchain --------|---------------|---------- -``0.6.10`` | | ``GCCcore/11.2.0`` ``0.6.10`` | | ``GCCcore/11.3.0`` ``0.6.10`` | ``-Python-2.7.18`` | ``GCCcore/12.3.0`` ``0.6.10`` | | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/t/Trinity.md b/docs/version-specific/supported-software/t/Trinity.md index c143fe40aa..d9b785f16b 100644 --- a/docs/version-specific/supported-software/t/Trinity.md +++ b/docs/version-specific/supported-software/t/Trinity.md @@ -10,7 +10,6 @@ Trinity represents a novel method for the efficient and robust de novo reconstru version | versionsuffix | toolchain --------|---------------|---------- -``2.15.1`` | | ``foss/2021b`` ``2.15.1`` | | ``foss/2022a`` ``2.15.2`` | | ``foss/2023a`` ``2.15.2`` | ``-Java-17`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/t/Triplexator.md b/docs/version-specific/supported-software/t/Triplexator.md deleted file mode 100644 index 424c023af0..0000000000 --- a/docs/version-specific/supported-software/t/Triplexator.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Triplexator - -Triplexator is a tool for detecting nucleic acid triple helices and triplex features in nucleotide sequences using the canonical triplex-formation rules. - -*homepage*: - -version | toolchain ---------|---------- -``1.3.3`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/Trycycler.md b/docs/version-specific/supported-software/t/Trycycler.md index 6b26d47b6e..6496932e92 100644 --- a/docs/version-specific/supported-software/t/Trycycler.md +++ b/docs/version-specific/supported-software/t/Trycycler.md @@ -4,13 +4,12 @@ search: --- # Trycycler -Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes. +A tool for generating consensus long-read assemblies for bacterial genomes. *homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``0.5.3`` | | ``foss/2021b`` ``0.5.5`` | ``-R-4.3.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/t/TurboVNC.md b/docs/version-specific/supported-software/t/TurboVNC.md index d11e46e53e..888adac57e 100644 --- a/docs/version-specific/supported-software/t/TurboVNC.md +++ b/docs/version-specific/supported-software/t/TurboVNC.md @@ -13,6 +13,7 @@ version | toolchain ``3.0.1`` | ``GCCcore/11.3.0`` ``3.1.2`` | ``GCCcore/13.3.0`` ``3.2`` | ``GCCcore/14.2.0`` +``3.3`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/Twisted.md b/docs/version-specific/supported-software/t/Twisted.md index 7322be4ed3..566d981949 100644 --- a/docs/version-specific/supported-software/t/Twisted.md +++ b/docs/version-specific/supported-software/t/Twisted.md @@ -11,6 +11,7 @@ Event-driven networking engine written in Python version | toolchain --------|---------- ``25.5.0`` | ``GCCcore/13.3.0`` +``25.5.0`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/index.md b/docs/version-specific/supported-software/t/index.md index b7b4f9d99a..3689092a09 100644 --- a/docs/version-specific/supported-software/t/index.md +++ b/docs/version-specific/supported-software/t/index.md @@ -12,7 +12,9 @@ search: * [t-SNE-CUDA](t-SNE-CUDA.md) * [tabix](tabix.md) * [tabixpp](tabixpp.md) + * [table2asn](table2asn.md) * [TAMkin](TAMkin.md) + * [tangram-sc](tangram-sc.md) * [tantan](tantan.md) * [Tapenade](Tapenade.md) * [task-spooler](task-spooler.md) @@ -33,8 +35,6 @@ search: * [tensorboardX](tensorboardX.md) * [TensorFlow](TensorFlow.md) * [tensorflow-compression](tensorflow-compression.md) - * [TensorFlow-Datasets](TensorFlow-Datasets.md) - * [TensorFlow-Graphics](TensorFlow-Graphics.md) * [tensorflow-probability](tensorflow-probability.md) * [TensorRT](TensorRT.md) * [tensorstore](tensorstore.md) @@ -51,9 +51,9 @@ search: * [text-unidecode](text-unidecode.md) * [TF-COMB](TF-COMB.md) * [TGS-GapCloser](TGS-GapCloser.md) - * [Theano](Theano.md) * [thirdorder](thirdorder.md) * [THOP](THOP.md) + * [TIDDIT](TIDDIT.md) * [tidymodels](tidymodels.md) * [tiktoken](tiktoken.md) * [time](time.md) @@ -69,10 +69,9 @@ search: * [tinyxml2](tinyxml2.md) * [Tk](Tk.md) * [Tkinter](Tkinter.md) + * [tllist](tllist.md) * [tlparse](tlparse.md) * [TM-align](TM-align.md) - * [tMAE](tMAE.md) - * [tmap](tmap.md) * [tmpi](tmpi.md) * [tmux](tmux.md) * [TOBIAS](TOBIAS.md) @@ -105,6 +104,7 @@ search: * [TRAVIS-Analyzer](TRAVIS-Analyzer.md) * [tree-sitter](tree-sitter.md) * [TreeMix](TreeMix.md) + * [treePL](treePL.md) * [treeseg](treeseg.md) * [TRF](TRF.md) * [Triangle](Triangle.md) @@ -115,7 +115,6 @@ search: * [Trimmomatic](Trimmomatic.md) * [Trinity](Trinity.md) * [Trinotate](Trinotate.md) - * [Triplexator](Triplexator.md) * [TRIQS](TRIQS.md) * [TRIQS-cthyb](TRIQS-cthyb.md) * [TRIQS-dft_tools](TRIQS-dft_tools.md) @@ -124,6 +123,7 @@ search: * [Triton](Triton.md) * [TRL](TRL.md) * [tRNAscan-SE](tRNAscan-SE.md) + * [trove-classifiers](trove-classifiers.md) * [TRUST4](TRUST4.md) * [trusTEr](trusTEr.md) * [Trycycler](Trycycler.md) diff --git a/docs/version-specific/supported-software/t/tMAE.md b/docs/version-specific/supported-software/t/tMAE.md deleted file mode 100644 index fc7c3111df..0000000000 --- a/docs/version-specific/supported-software/t/tMAE.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# tMAE - -Package containing functions to: perform a negative binomial test on allele-specific counts add gnomAD minor allele frequencies MAplot (FC vs total counts) of allele-specific counts and results allelic counts (ALT vs REF) - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.0.1`` | ``-R-4.1.2`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/tRNAscan-SE.md b/docs/version-specific/supported-software/t/tRNAscan-SE.md index 16a2dc742b..071055fff9 100644 --- a/docs/version-specific/supported-software/t/tRNAscan-SE.md +++ b/docs/version-specific/supported-software/t/tRNAscan-SE.md @@ -4,16 +4,16 @@ search: --- # tRNAscan-SE -A program for detection of tRNA genes +tRNAscan-SE is the most widely employed tool for identifying and annotating tRNA genes in genomes. -*homepage*: +*homepage*: version | toolchain --------|---------- -``2.0.12`` | ``GCC/11.2.0`` ``2.0.12`` | ``foss/2022b`` ``2.0.12`` | ``foss/2023a`` ``2.0.12`` | ``foss/2024a`` +``2.0.12`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tabix.md b/docs/version-specific/supported-software/t/tabix.md index 3fc5d95498..69e93432c4 100644 --- a/docs/version-specific/supported-software/t/tabix.md +++ b/docs/version-specific/supported-software/t/tabix.md @@ -6,11 +6,10 @@ search: Generic indexer for TAB-delimited genome position files -*homepage*: +*homepage*: version | toolchain --------|---------- -``0.2.6`` | ``GCCcore/11.2.0`` ``0.2.6`` | ``GCCcore/11.3.0`` ``0.2.6`` | ``GCCcore/12.3.0`` ``0.2.6`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/t/tabixpp.md b/docs/version-specific/supported-software/t/tabixpp.md index 8e792a930c..395fea1f02 100644 --- a/docs/version-specific/supported-software/t/tabixpp.md +++ b/docs/version-specific/supported-software/t/tabixpp.md @@ -10,7 +10,6 @@ C++ wrapper to tabix indexer version | toolchain --------|---------- -``1.1.0`` | ``GCC/11.2.0`` ``1.1.2`` | ``GCC/11.3.0`` ``1.1.2`` | ``GCC/12.2.0`` ``1.1.2`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/t/table2asn.md b/docs/version-specific/supported-software/t/table2asn.md new file mode 100644 index 0000000000..d4efa29663 --- /dev/null +++ b/docs/version-specific/supported-software/t/table2asn.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# table2asn + +table2asn is a command-line program that creates sequence records for submission to GenBank. This is the successor to tbl2asn. + +*homepage*: + +version | toolchain +--------|---------- +``20250916`` | ``GCCcore/14.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/c/CIRIquant.md b/docs/version-specific/supported-software/t/tangram-sc.md similarity index 74% rename from docs/version-specific/supported-software/c/CIRIquant.md rename to docs/version-specific/supported-software/t/tangram-sc.md index b8b64d0a52..907d061e7c 100644 --- a/docs/version-specific/supported-software/c/CIRIquant.md +++ b/docs/version-specific/supported-software/t/tangram-sc.md @@ -2,15 +2,16 @@ search: boost: 0.5 --- -# CIRIquant +# tangram-sc -CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data +Mapping single-cell (or single-nucleus) gene expression data onto spatial gene expression data. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``1.1.2-20221201`` | ``-Python-2.7.18`` | ``foss/2021b`` +``1.0.4`` | ``-CUDA-12.6.0`` | ``foss/2024a`` +``1.0.4`` | | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tantan.md b/docs/version-specific/supported-software/t/tantan.md index ec744e78bf..b29ba62ce1 100644 --- a/docs/version-specific/supported-software/t/tantan.md +++ b/docs/version-specific/supported-software/t/tantan.md @@ -10,7 +10,6 @@ tantan identifies simple regions / low complexity / tandem repeats in DNA or pro version | toolchain --------|---------- -``40`` | ``GCC/11.2.0`` ``50`` | ``GCC/12.3.0`` ``51`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/t/tbb.md b/docs/version-specific/supported-software/t/tbb.md index f99d5e720b..6f1ceb377b 100644 --- a/docs/version-specific/supported-software/t/tbb.md +++ b/docs/version-specific/supported-software/t/tbb.md @@ -11,13 +11,11 @@ Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel version | toolchain --------|---------- ``2020.1`` | ``GCCcore/12.3.0`` -``2020.3`` | ``GCCcore/11.2.0`` ``2020.3`` | ``GCCcore/12.3.0`` ``2021.10.0`` | ``GCCcore/12.2.0`` ``2021.11.0`` | ``GCCcore/12.3.0`` ``2021.13.0`` | ``GCCcore/13.2.0`` ``2021.13.0`` | ``GCCcore/13.3.0`` -``2021.4.0`` | ``GCCcore/11.2.0`` ``2021.5.0`` | ``GCCcore/11.3.0`` ``2021.9.0`` | ``GCCcore/12.2.0`` ``2022.2.0`` | ``GCCcore/14.2.0`` diff --git a/docs/version-specific/supported-software/t/tcsh.md b/docs/version-specific/supported-software/t/tcsh.md index d5cd1c862d..446c884b54 100644 --- a/docs/version-specific/supported-software/t/tcsh.md +++ b/docs/version-specific/supported-software/t/tcsh.md @@ -10,7 +10,6 @@ Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C sh version | toolchain --------|---------- -``6.24.01`` | ``GCCcore/11.2.0`` ``6.24.01`` | ``GCCcore/11.3.0`` ``6.24.07`` | ``GCCcore/12.2.0`` ``6.24.10`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/t/tensorboardX.md b/docs/version-specific/supported-software/t/tensorboardX.md index 34cae0066e..4f88c8c037 100644 --- a/docs/version-specific/supported-software/t/tensorboardX.md +++ b/docs/version-specific/supported-software/t/tensorboardX.md @@ -15,6 +15,7 @@ version | toolchain ``2.6.2.2`` | ``foss/2023a`` ``2.6.2.2`` | ``foss/2023b`` ``2.6.4`` | ``foss/2024a`` +``2.6.4`` | ``foss/2025a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/t/tensorflow-probability.md b/docs/version-specific/supported-software/t/tensorflow-probability.md index 090370c83a..5bd044056d 100644 --- a/docs/version-specific/supported-software/t/tensorflow-probability.md +++ b/docs/version-specific/supported-software/t/tensorflow-probability.md @@ -10,7 +10,6 @@ TensorFlow Probability (TFP) is a library for probabilistic reasoning and statis version | versionsuffix | toolchain --------|---------------|---------- -``0.16.0`` | | ``foss/2021b`` ``0.19.0`` | ``-CUDA-11.7.0`` | ``foss/2022a`` ``0.19.0`` | | ``foss/2022a`` ``0.20.0`` | | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/t/texinfo.md b/docs/version-specific/supported-software/t/texinfo.md index 5dbaccab43..89cf469c95 100644 --- a/docs/version-specific/supported-software/t/texinfo.md +++ b/docs/version-specific/supported-software/t/texinfo.md @@ -10,7 +10,6 @@ Texinfo is the official documentation format of the GNU project. version | toolchain --------|---------- -``6.8`` | ``GCCcore/11.2.0`` ``7.0.2`` | ``GCCcore/11.3.0`` ``7.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/t/texlive.md b/docs/version-specific/supported-software/t/texlive.md index 2ea867194d..ae54d703f6 100644 --- a/docs/version-specific/supported-software/t/texlive.md +++ b/docs/version-specific/supported-software/t/texlive.md @@ -10,8 +10,6 @@ TeX is a typesetting language. Instead of visually formatting your text, you ent version | toolchain --------|---------- -``20210324`` | ``GCC/11.2.0`` -``20220321`` | ``GCC/11.2.0`` ``20230313`` | ``GCC/11.3.0`` ``20230313`` | ``GCC/12.3.0`` ``20230313`` | ``GCC/13.2.0`` diff --git a/docs/version-specific/supported-software/t/time.md b/docs/version-specific/supported-software/t/time.md index eff3f691ac..a609698e56 100644 --- a/docs/version-specific/supported-software/t/time.md +++ b/docs/version-specific/supported-software/t/time.md @@ -10,7 +10,6 @@ The `time' command runs another program, then displays information about the res version | toolchain --------|---------- -``1.9`` | ``GCCcore/11.2.0`` ``1.9`` | ``GCCcore/11.3.0`` ``1.9`` | ``GCCcore/12.2.0`` ``1.9`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/t/tinyxml2.md b/docs/version-specific/supported-software/t/tinyxml2.md index 37894689ab..c8f58e9b21 100644 --- a/docs/version-specific/supported-software/t/tinyxml2.md +++ b/docs/version-specific/supported-software/t/tinyxml2.md @@ -10,6 +10,7 @@ TinyXML-2 is a simple, small, efficient, C++ XML parser that can be easily integ version | toolchain --------|---------- +``10.0.0`` | ``GCCcore/13.2.0`` ``10.0.0`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/t/tllist.md b/docs/version-specific/supported-software/t/tllist.md new file mode 100644 index 0000000000..d6cff1fb76 --- /dev/null +++ b/docs/version-specific/supported-software/t/tllist.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# tllist + +tllist is a Typed Linked List C header file only library implemented using pre-processor macros. + +*homepage*: + +version | toolchain +--------|---------- +``1.1.0`` | ``GCCcore/14.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/t/tmap.md b/docs/version-specific/supported-software/t/tmap.md deleted file mode 100644 index f8a74f375b..0000000000 --- a/docs/version-specific/supported-software/t/tmap.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# tmap - -tmap is a very fast visualization library for large, high-dimensional data sets. Currently, tmap is available for Python. tmap's graph layouts are based on the OGDF library. - -*homepage*: - -version | toolchain ---------|---------- -``20220502`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/t/tmux.md b/docs/version-specific/supported-software/t/tmux.md index 5b4f2e36c4..ac690523d9 100644 --- a/docs/version-specific/supported-software/t/tmux.md +++ b/docs/version-specific/supported-software/t/tmux.md @@ -10,7 +10,6 @@ tmux is a terminal multiplexer: it enables a number of terminals to be created, version | toolchain --------|---------- -``3.2a`` | ``GCCcore/11.2.0`` ``3.2a`` | ``system`` ``3.3a`` | ``GCCcore/11.3.0`` ``3.3a`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/t/tqdm.md b/docs/version-specific/supported-software/t/tqdm.md index d2425be303..701e77688f 100644 --- a/docs/version-specific/supported-software/t/tqdm.md +++ b/docs/version-specific/supported-software/t/tqdm.md @@ -10,7 +10,6 @@ A fast, extensible progress bar for Python and CLI version | toolchain --------|---------- -``4.62.3`` | ``GCCcore/11.2.0`` ``4.64.0`` | ``GCCcore/11.3.0`` ``4.64.1`` | ``GCCcore/12.2.0`` ``4.66.1`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/t/treePL.md b/docs/version-specific/supported-software/t/treePL.md new file mode 100644 index 0000000000..3882715542 --- /dev/null +++ b/docs/version-specific/supported-software/t/treePL.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# treePL + +treePL is a phylogenetic penalized likelihood program. + +*homepage*: + +version | toolchain +--------|---------- +``1.0-20250627`` | ``gompi/2024a`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/t/trimAl.md b/docs/version-specific/supported-software/t/trimAl.md index 9ad0216e03..560d03cbd8 100644 --- a/docs/version-specific/supported-software/t/trimAl.md +++ b/docs/version-specific/supported-software/t/trimAl.md @@ -10,7 +10,6 @@ EVB, FEP and LIE simulator. version | toolchain --------|---------- -``1.4.1`` | ``GCCcore/11.2.0`` ``1.4.1`` | ``GCCcore/11.3.0`` ``1.4.1`` | ``GCCcore/12.3.0`` ``1.5.0`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/t/trimesh.md b/docs/version-specific/supported-software/t/trimesh.md index 710912cce4..aa537dbd9e 100644 --- a/docs/version-specific/supported-software/t/trimesh.md +++ b/docs/version-specific/supported-software/t/trimesh.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``3.17.1`` | ``foss/2022a`` ``3.21.5`` | ``gfbf/2022b`` +``4.10.0`` | ``gfbf/2025a`` ``4.10.0`` | ``gfbf/2025b`` ``4.4.9`` | ``gfbf/2024a`` ``4.5.3`` | ``gfbf/2023b`` diff --git a/docs/version-specific/supported-software/t/trove-classifiers.md b/docs/version-specific/supported-software/t/trove-classifiers.md new file mode 100644 index 0000000000..f299f980a0 --- /dev/null +++ b/docs/version-specific/supported-software/t/trove-classifiers.md @@ -0,0 +1,21 @@ +--- +search: + boost: 0.5 +--- +# trove-classifiers + +Classifiers categorize projects per PEP 301. Use this package to validate classifiers in packages for PyPI upload or download. + +*homepage*: + +version | toolchain +--------|---------- +``2026.1.14.14`` | ``GCCcore/13.2.0`` +``2026.1.14.14`` | ``GCCcore/13.3.0`` +``2026.1.14.14`` | ``GCCcore/14.2.0`` +``2026.1.14.14`` | ``GCCcore/14.3.0`` +``2026.1.14.14`` | ``GCCcore/15.2.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/t/typing-extensions.md b/docs/version-specific/supported-software/t/typing-extensions.md index 87760f2637..785f75fa1e 100644 --- a/docs/version-specific/supported-software/t/typing-extensions.md +++ b/docs/version-specific/supported-software/t/typing-extensions.md @@ -4,13 +4,12 @@ search: --- # typing-extensions -Typing Extensions – Backported and Experimental Type Hints for Python +Typing Extensions - Backported and Experimental Type Hints for Python -*homepage*: +*homepage*: version | toolchain --------|---------- -``3.10.0.2`` | ``GCCcore/11.2.0`` ``4.10.0`` | ``GCCcore/13.2.0`` ``4.11.0`` | ``GCCcore/13.3.0`` ``4.14.0`` | ``GCCcore/14.2.0`` diff --git a/docs/version-specific/supported-software/u/UCC.md b/docs/version-specific/supported-software/u/UCC.md index a8c41c0120..db82c53921 100644 --- a/docs/version-specific/supported-software/u/UCC.md +++ b/docs/version-specific/supported-software/u/UCC.md @@ -17,6 +17,7 @@ version | toolchain ``1.3.0`` | ``GCCcore/13.3.0`` ``1.3.0`` | ``GCCcore/14.2.0`` ``1.4.4`` | ``GCCcore/14.3.0`` +``1.7.0`` | ``GCCcore/15.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/UCX-CUDA.md b/docs/version-specific/supported-software/u/UCX-CUDA.md index afd9f4e812..51ba5ff241 100644 --- a/docs/version-specific/supported-software/u/UCX-CUDA.md +++ b/docs/version-specific/supported-software/u/UCX-CUDA.md @@ -10,9 +10,6 @@ Unified Communication X An open-source production grade communication framework version | versionsuffix | toolchain --------|---------------|---------- -``1.11.0`` | ``-CUDA-11.4.1`` | ``GCCcore/11.2.0`` -``1.11.2`` | ``-CUDA-11.4.1`` | ``GCCcore/11.2.0`` -``1.11.2`` | ``-CUDA-11.5.2`` | ``GCCcore/11.2.0`` ``1.12.1`` | ``-CUDA-11.7.0`` | ``GCCcore/11.3.0`` ``1.13.1`` | ``-CUDA-11.7.0`` | ``GCCcore/12.2.0`` ``1.13.1`` | ``-CUDA-12.0.0`` | ``GCCcore/12.2.0`` diff --git a/docs/version-specific/supported-software/u/UCX-ROCm.md b/docs/version-specific/supported-software/u/UCX-ROCm.md deleted file mode 100644 index 192495967b..0000000000 --- a/docs/version-specific/supported-software/u/UCX-ROCm.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# UCX-ROCm - -Unified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX ROCm support. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``1.11.2`` | ``-ROCm-4.5.0`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/u/UCX.md b/docs/version-specific/supported-software/u/UCX.md index 7127240dc7..fddc667f43 100644 --- a/docs/version-specific/supported-software/u/UCX.md +++ b/docs/version-specific/supported-software/u/UCX.md @@ -10,8 +10,6 @@ Unified Communication X An open-source production grade communication framework version | toolchain --------|---------- -``1.11.0`` | ``GCCcore/11.2.0`` -``1.11.2`` | ``GCCcore/11.2.0`` ``1.12.1`` | ``GCCcore/11.3.0`` ``1.13.1`` | ``GCCcore/12.2.0`` ``1.14.0`` | ``GCCcore/12.2.0`` @@ -19,13 +17,13 @@ version | toolchain ``1.15.0`` | ``GCCcore/13.2.0`` ``1.16.0`` | ``GCCcore/13.2.0`` ``1.16.0`` | ``GCCcore/13.3.0`` -``1.16.0-rc4`` | ``GCCcore/11.2.0`` ``1.16.0-rc4`` | ``GCCcore/11.3.0`` ``1.16.0-rc4`` | ``GCCcore/12.2.0`` ``1.16.0-rc4`` | ``GCCcore/12.3.0`` ``1.16.0-rc4`` | ``GCCcore/13.2.0`` ``1.18.0`` | ``GCCcore/14.2.0`` ``1.19.0`` | ``GCCcore/14.3.0`` +``1.20.0`` | ``GCCcore/15.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/UDUNITS.md b/docs/version-specific/supported-software/u/UDUNITS.md index 04e197979e..21bc54f4ef 100644 --- a/docs/version-specific/supported-software/u/UDUNITS.md +++ b/docs/version-specific/supported-software/u/UDUNITS.md @@ -10,7 +10,6 @@ UDUNITS supports conversion of unit specifications between formatted and binary version | toolchain --------|---------- -``2.2.28`` | ``GCCcore/11.2.0`` ``2.2.28`` | ``GCCcore/11.3.0`` ``2.2.28`` | ``GCCcore/12.2.0`` ``2.2.28`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/u/UShER.md b/docs/version-specific/supported-software/u/UShER.md deleted file mode 100644 index 4ec4d5fba6..0000000000 --- a/docs/version-specific/supported-software/u/UShER.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# UShER - -UShER is now a package consisting of a family of programs for rapid phylogenetic analyses, particularly suitable for the SARS-CoV-2 genomes. - -*homepage*: - -version | toolchain ---------|---------- -``0.5.0`` | ``gompi/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/u/Umpire.md b/docs/version-specific/supported-software/u/Umpire.md index c3fcf9541f..0e37e0aa5d 100644 --- a/docs/version-specific/supported-software/u/Umpire.md +++ b/docs/version-specific/supported-software/u/Umpire.md @@ -8,9 +8,10 @@ Umpire is a resource management library that allows the discovery, provision, an *homepage*: -version | toolchain ---------|---------- -``2024.02.1`` | ``foss/2023a`` +version | versionsuffix | toolchain +--------|---------------|---------- +``2024.02.1`` | | ``foss/2023a`` +``2025.12.0`` | ``-CUDA-12.9.1`` | ``gompi/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/UnZip.md b/docs/version-specific/supported-software/u/UnZip.md index 76b0a9736c..a83eeb9e09 100644 --- a/docs/version-specific/supported-software/u/UnZip.md +++ b/docs/version-specific/supported-software/u/UnZip.md @@ -10,7 +10,6 @@ UnZip is an extraction utility for archives compressed in .zip format (also call version | toolchain --------|---------- -``6.0`` | ``GCCcore/11.2.0`` ``6.0`` | ``GCCcore/11.3.0`` ``6.0`` | ``GCCcore/12.2.0`` ``6.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/u/Underworld.md b/docs/version-specific/supported-software/u/Underworld.md index 4894a6ed0c..b425465aa1 100644 --- a/docs/version-specific/supported-software/u/Underworld.md +++ b/docs/version-specific/supported-software/u/Underworld.md @@ -6,7 +6,7 @@ search: Underworld is a Python API (Application Programming Interface) which provides functionality for the modelling of geodynamics processes, and is designed to work (almost) seamlessly across PC, cloud and HPC infrastructure. Primarily the API consists of a set of Python classes from which numerical geodynamics models may be constructed. The API also provides the tools required for inline analysis and data management. For scalability across multiprocessor platforms, MPI (Message Passing Interface) is leveraged, and for performant operation all heavy computations are executed within a statically typed layer. Note: This version does not come with badlands. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- diff --git a/docs/version-specific/supported-software/u/Unicycler.md b/docs/version-specific/supported-software/u/Unicycler.md index 19127dfdeb..16969c029f 100644 --- a/docs/version-specific/supported-software/u/Unicycler.md +++ b/docs/version-specific/supported-software/u/Unicycler.md @@ -10,7 +10,6 @@ Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumin version | toolchain --------|---------- -``0.5.0`` | ``gompi/2021b`` ``0.5.0`` | ``gompi/2023a`` ``0.5.1`` | ``gompi/2024a`` diff --git a/docs/version-specific/supported-software/u/index.md b/docs/version-specific/supported-software/u/index.md index 291969911c..9114759fa6 100644 --- a/docs/version-specific/supported-software/u/index.md +++ b/docs/version-specific/supported-software/u/index.md @@ -13,7 +13,6 @@ search: * [UCX](UCX.md) * [UCX-CUDA](UCX-CUDA.md) * [ucx-py](ucx-py.md) - * [UCX-ROCm](UCX-ROCm.md) * [UDA](UDA.md) * [UDUNITS](UDUNITS.md) * [UFCG](UFCG.md) @@ -22,7 +21,6 @@ search: * [UMI-tools](UMI-tools.md) * [Umpire](Umpire.md) * [uncertainties](uncertainties.md) - * [uncertainty-calibration](uncertainty-calibration.md) * [uncrustify](uncrustify.md) * [Underworld](Underworld.md) * [Uni-Core](Uni-Core.md) @@ -37,7 +35,6 @@ search: * [UnZip](UnZip.md) * [USalign](USalign.md) * [USEARCH](USEARCH.md) - * [UShER](UShER.md) * [utf8proc](utf8proc.md) * [uthash](uthash.md) * [util-linux](util-linux.md) diff --git a/docs/version-specific/supported-software/u/umap-learn.md b/docs/version-specific/supported-software/u/umap-learn.md index 8140edc788..1bcdeae852 100644 --- a/docs/version-specific/supported-software/u/umap-learn.md +++ b/docs/version-specific/supported-software/u/umap-learn.md @@ -10,7 +10,6 @@ Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction te version | toolchain --------|---------- -``0.5.3`` | ``foss/2021b`` ``0.5.3`` | ``foss/2022a`` ``0.5.5`` | ``foss/2023a`` ``0.5.7`` | ``foss/2023b`` diff --git a/docs/version-specific/supported-software/u/uncertainties.md b/docs/version-specific/supported-software/u/uncertainties.md index 3c5d55b3e7..047382fbcd 100644 --- a/docs/version-specific/supported-software/u/uncertainties.md +++ b/docs/version-specific/supported-software/u/uncertainties.md @@ -10,7 +10,6 @@ Transparent calculations with uncertainties on the quantities involved (aka erro version | toolchain --------|---------- -``3.1.7`` | ``foss/2021b`` ``3.1.7`` | ``foss/2023a`` ``3.2.2`` | ``foss/2023b`` ``3.2.3`` | ``foss/2024a`` diff --git a/docs/version-specific/supported-software/u/uncertainty-calibration.md b/docs/version-specific/supported-software/u/uncertainty-calibration.md deleted file mode 100644 index c5345f830c..0000000000 --- a/docs/version-specific/supported-software/u/uncertainty-calibration.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# uncertainty-calibration - -Python library to measure the calibration error of models, including confidence intervals computed by Bootstrap resampling, and code to recalibrate models. - -*homepage*: - -version | toolchain ---------|---------- -``0.0.9`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/u/unifdef.md b/docs/version-specific/supported-software/u/unifdef.md index 62a8e9ae92..cb010baa0f 100644 --- a/docs/version-specific/supported-software/u/unifdef.md +++ b/docs/version-specific/supported-software/u/unifdef.md @@ -13,6 +13,7 @@ version | toolchain ``2.12`` | ``GCCcore/11.3.0`` ``2.12`` | ``GCCcore/12.3.0`` ``2.12`` | ``GCCcore/14.2.0`` +``2.12`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/unimap.md b/docs/version-specific/supported-software/u/unimap.md index 8c93a9c5cf..31beb363d7 100644 --- a/docs/version-specific/supported-software/u/unimap.md +++ b/docs/version-specific/supported-software/u/unimap.md @@ -11,6 +11,7 @@ Unimap is a fork of minimap2 optimized for assembly-to-reference alignment. It i version | toolchain --------|---------- ``0.1`` | ``GCCcore/11.3.0`` +``0.1`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/unittest-xml-reporting.md b/docs/version-specific/supported-software/u/unittest-xml-reporting.md index 3dd2ac6a21..ba381ef576 100644 --- a/docs/version-specific/supported-software/u/unittest-xml-reporting.md +++ b/docs/version-specific/supported-software/u/unittest-xml-reporting.md @@ -10,7 +10,6 @@ A unittest test runner that can save test results to XML files in xUnit format. version | toolchain --------|---------- -``3.1.0`` | ``GCCcore/11.2.0`` ``3.1.0`` | ``GCCcore/11.3.0`` ``3.1.0`` | ``GCCcore/12.2.0`` ``3.1.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/u/unixODBC.md b/docs/version-specific/supported-software/u/unixODBC.md index 00f84daf0f..0cd3040f3b 100644 --- a/docs/version-specific/supported-software/u/unixODBC.md +++ b/docs/version-specific/supported-software/u/unixODBC.md @@ -12,6 +12,7 @@ version | toolchain --------|---------- ``2.3.11`` | ``foss/2022b`` ``2.3.12`` | ``GCCcore/12.3.0`` +``2.3.14`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/u/utf8proc.md b/docs/version-specific/supported-software/u/utf8proc.md index e6bb8661d7..913bb9edc6 100644 --- a/docs/version-specific/supported-software/u/utf8proc.md +++ b/docs/version-specific/supported-software/u/utf8proc.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``2.10.0`` | ``GCCcore/14.2.0`` ``2.10.0`` | ``GCCcore/14.3.0`` -``2.6.1`` | ``GCCcore/11.2.0`` ``2.7.0`` | ``GCCcore/11.3.0`` ``2.8.0`` | ``GCCcore/12.2.0`` ``2.8.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/u/util-linux.md b/docs/version-specific/supported-software/u/util-linux.md index fb91c6fe67..f59c7b1a5f 100644 --- a/docs/version-specific/supported-software/u/util-linux.md +++ b/docs/version-specific/supported-software/u/util-linux.md @@ -10,7 +10,6 @@ Set of Linux utilities version | toolchain --------|---------- -``2.37`` | ``GCCcore/11.2.0`` ``2.38`` | ``GCCcore/11.3.0`` ``2.38.1`` | ``GCCcore/12.2.0`` ``2.39`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/c/CLEAR.md b/docs/version-specific/supported-software/v/VCF2Dis.md similarity index 75% rename from docs/version-specific/supported-software/c/CLEAR.md rename to docs/version-specific/supported-software/v/VCF2Dis.md index 28480f1aa1..8effe16882 100644 --- a/docs/version-specific/supported-software/c/CLEAR.md +++ b/docs/version-specific/supported-software/v/VCF2Dis.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# CLEAR +# VCF2Dis -Direct comparison of circular and linear RNA expression +An an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files. -*homepage*: +*homepage*: version | versionsuffix | toolchain --------|---------------|---------- -``20210117`` | ``-Python-2.7.18`` | ``foss/2021b`` +``1.55`` | ``-R-4.4.2`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/VCFtools.md b/docs/version-specific/supported-software/v/VCFtools.md index 3ac6660f40..fbb8542e47 100644 --- a/docs/version-specific/supported-software/v/VCFtools.md +++ b/docs/version-specific/supported-software/v/VCFtools.md @@ -10,7 +10,6 @@ The aim of VCFtools is to provide easily accessible methods for working with co version | toolchain --------|---------- -``0.1.16`` | ``GCC/11.2.0`` ``0.1.16`` | ``GCC/11.3.0`` ``0.1.16`` | ``GCC/12.2.0`` ``0.1.16`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/v/VEP.md b/docs/version-specific/supported-software/v/VEP.md index 73645c8c0f..69dc98598a 100644 --- a/docs/version-specific/supported-software/v/VEP.md +++ b/docs/version-specific/supported-software/v/VEP.md @@ -10,7 +10,6 @@ Variant Effect Predictor (VEP) determines the effect of your variants (SNPs, in version | toolchain --------|---------- -``105`` | ``GCC/11.2.0`` ``107`` | ``GCC/11.3.0`` ``111`` | ``GCC/12.2.0`` ``113.0`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/v/VTK.md b/docs/version-specific/supported-software/v/VTK.md index a8f3f0fbde..906e436c20 100644 --- a/docs/version-specific/supported-software/v/VTK.md +++ b/docs/version-specific/supported-software/v/VTK.md @@ -10,7 +10,6 @@ The Visualization Toolkit (VTK) is an open-source, freely available software sys version | toolchain --------|---------- -``9.1.0`` | ``foss/2021b`` ``9.2.0.rc2`` | ``foss/2022a`` ``9.2.2`` | ``foss/2022a`` ``9.2.6`` | ``foss/2022b`` diff --git a/docs/version-specific/supported-software/v/VTune.md b/docs/version-specific/supported-software/v/VTune.md index 74d814574b..09a68418cb 100644 --- a/docs/version-specific/supported-software/v/VTune.md +++ b/docs/version-specific/supported-software/v/VTune.md @@ -10,7 +10,6 @@ Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, For version | toolchain --------|---------- -``2020_update3`` | ``system`` ``2021.6.0`` | ``system`` ``2021.9.0`` | ``system`` ``2022.0.0`` | ``system`` @@ -20,6 +19,7 @@ version | toolchain ``2024.3.0`` | ``system`` ``2025.0.0`` | ``system`` ``2025.4.0`` | ``system`` +``2025.9.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/Valgrind.md b/docs/version-specific/supported-software/v/Valgrind.md index 30bccb3e96..c255c94223 100644 --- a/docs/version-specific/supported-software/v/Valgrind.md +++ b/docs/version-specific/supported-software/v/Valgrind.md @@ -10,8 +10,6 @@ Valgrind: Debugging and profiling tools version | toolchain --------|---------- -``3.18.1`` | ``gompi/2021b`` -``3.18.1`` | ``iimpi/2021b`` ``3.19.0`` | ``gompi/2022a`` ``3.20.0`` | ``gompi/2022a`` ``3.21.0`` | ``gompi/2022b`` diff --git a/docs/version-specific/supported-software/v/Vamb.md b/docs/version-specific/supported-software/v/Vamb.md deleted file mode 100644 index 56812d652a..0000000000 --- a/docs/version-specific/supported-software/v/Vamb.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Vamb - -Vamb is a metagenomic binner which feeds sequence composition information from a contig catalogue and co-abundance information from BAM files into a variational autoencoder and clusters the latent representation. - -*homepage*: - -version | versionsuffix | toolchain ---------|---------------|---------- -``3.0.9`` | ``-CUDA-11.5.2`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/Velvet.md b/docs/version-specific/supported-software/v/Velvet.md index 77fb98ca5a..111c4da80c 100644 --- a/docs/version-specific/supported-software/v/Velvet.md +++ b/docs/version-specific/supported-software/v/Velvet.md @@ -10,7 +10,6 @@ Sequence assembler for very short reads version | versionsuffix | toolchain --------|---------------|---------- -``1.2.10`` | ``-mt-kmer_191`` | ``GCC/11.2.0`` ``1.2.10`` | ``-mt-kmer_191`` | ``GCC/13.3.0`` ``1.2.10`` | ``-mt-kmer_191`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/v/ViennaRNA.md b/docs/version-specific/supported-software/v/ViennaRNA.md index 2e03fe6ba5..9446eada9f 100644 --- a/docs/version-specific/supported-software/v/ViennaRNA.md +++ b/docs/version-specific/supported-software/v/ViennaRNA.md @@ -10,8 +10,6 @@ The Vienna RNA Package consists of a C code library and several stand-alone prog version | toolchain --------|---------- -``2.5.0`` | ``foss/2021b`` -``2.5.1`` | ``foss/2021b`` ``2.7.0`` | ``foss/2023a`` ``2.7.0`` | ``gfbf/2024a`` ``2.7.2`` | ``gfbf/2025b`` diff --git a/docs/version-specific/supported-software/v/VirSorter.md b/docs/version-specific/supported-software/v/VirSorter.md deleted file mode 100644 index 9ea419c80e..0000000000 --- a/docs/version-specific/supported-software/v/VirSorter.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# VirSorter - -VirSorter: mining viral signal from microbial genomic data. - -*homepage*: - -version | toolchain ---------|---------- -``1.0.6`` | ``foss/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/VirSorter2.md b/docs/version-specific/supported-software/v/VirSorter2.md index c33f6d53f4..a86a4f5271 100644 --- a/docs/version-specific/supported-software/v/VirSorter2.md +++ b/docs/version-specific/supported-software/v/VirSorter2.md @@ -10,7 +10,6 @@ VirSorter2 applies a multi-classifier, expert-guided approach to detect diverse version | toolchain --------|---------- -``2.2.4`` | ``foss/2021b`` ``2.2.4`` | ``foss/2022a`` diff --git a/docs/version-specific/supported-software/v/VirtualGL.md b/docs/version-specific/supported-software/v/VirtualGL.md index 4baa90e4cb..b3d3b9121d 100644 --- a/docs/version-specific/supported-software/v/VirtualGL.md +++ b/docs/version-specific/supported-software/v/VirtualGL.md @@ -10,7 +10,6 @@ VirtualGL is an open source toolkit that gives any Linux or Unix remote display version | toolchain --------|---------- -``3.0`` | ``GCC/11.2.0`` ``3.1`` | ``GCC/12.3.0`` ``3.1.1`` | ``GCC/13.3.0`` ``3.1.3`` | ``GCC/14.2.0`` diff --git a/docs/version-specific/supported-software/v/VisCello.md b/docs/version-specific/supported-software/v/VisCello.md index ea3ed0af43..67d64e3847 100644 --- a/docs/version-specific/supported-software/v/VisCello.md +++ b/docs/version-specific/supported-software/v/VisCello.md @@ -11,6 +11,7 @@ Viscello for Visualization of Single Cell Data. version | versionsuffix | toolchain --------|---------------|---------- ``1.0.0`` | ``-R-4.3.2`` | ``foss/2023a`` +``1.0.0`` | ``-R-4.4.2`` | ``foss/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/Voro++.md b/docs/version-specific/supported-software/v/Voro++.md index ad15012c69..abd5dbd04a 100644 --- a/docs/version-specific/supported-software/v/Voro++.md +++ b/docs/version-specific/supported-software/v/Voro++.md @@ -10,7 +10,6 @@ Voro++ is a software library for carrying out three-dimensional computations of version | toolchain --------|---------- -``0.4.6`` | ``GCCcore/11.2.0`` ``0.4.6`` | ``GCCcore/11.3.0`` ``0.4.6`` | ``GCCcore/12.2.0`` ``0.4.6`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/v/Vulkan.md b/docs/version-specific/supported-software/v/Vulkan.md index 11a65c5aad..897daa7f28 100644 --- a/docs/version-specific/supported-software/v/Vulkan.md +++ b/docs/version-specific/supported-software/v/Vulkan.md @@ -10,6 +10,8 @@ Vulkan headers, ICDs, and tools version | toolchain --------|---------- +``1.4.328`` | ``GCCcore/12.3.0`` +``1.4.328`` | ``GCCcore/13.3.0`` ``1.4.328`` | ``GCCcore/14.2.0`` ``1.4.328`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/v/index.md b/docs/version-specific/supported-software/v/index.md index 32e7f4402b..95b044eb2b 100644 --- a/docs/version-specific/supported-software/v/index.md +++ b/docs/version-specific/supported-software/v/index.md @@ -11,12 +11,12 @@ search: * [vaeda](vaeda.md) * [Vala](Vala.md) * [Valgrind](Valgrind.md) - * [Vamb](Vamb.md) * [VAMPIRE-ASM](VAMPIRE-ASM.md) * [VarScan](VarScan.md) * [VASP](VASP.md) * [VASPKIT](VASPKIT.md) * [VBZ-Compression](VBZ-Compression.md) + * [VCF2Dis](VCF2Dis.md) * [vcflib](vcflib.md) * [VCFtools](VCFtools.md) * [vConTACT2](vConTACT2.md) @@ -24,6 +24,7 @@ search: * [VeloxChem](VeloxChem.md) * [Velvet](Velvet.md) * [VEP](VEP.md) + * [verifyBamID](verifyBamID.md) * [Verkko](Verkko.md) * [versioningit](versioningit.md) * [VESTA](VESTA.md) @@ -31,7 +32,6 @@ search: * [vigra](vigra.md) * [Vim](Vim.md) * [vireoSNP](vireoSNP.md) - * [VirSorter](VirSorter.md) * [VirSorter2](VirSorter2.md) * [virtualenv](virtualenv.md) * [VirtualGL](VirtualGL.md) @@ -46,13 +46,11 @@ search: * [vitessceR](vitessceR.md) * [vLLM](vLLM.md) * [VMD](VMD.md) - * [vorbis-tools](vorbis-tools.md) * [Voro++](Voro++.md) * [vRhyme](vRhyme.md) * [vsc-mympirun](vsc-mympirun.md) * [VSCode](VSCode.md) * [VSEARCH](VSEARCH.md) - * [vt](vt.md) * [VTE](VTE.md) * [VTK](VTK.md) * [VTune](VTune.md) diff --git a/docs/version-specific/supported-software/v/vcflib.md b/docs/version-specific/supported-software/v/vcflib.md index 98d318bb3d..dd4ebdc5fb 100644 --- a/docs/version-specific/supported-software/v/vcflib.md +++ b/docs/version-specific/supported-software/v/vcflib.md @@ -10,10 +10,10 @@ vcflib provides methods to manipulate and interpret sequence variation as it can version | versionsuffix | toolchain --------|---------------|---------- -``1.0.3`` | ``-R-4.1.2`` | ``foss/2021b`` ``1.0.9`` | ``-R-4.2.1`` | ``foss/2022a`` ``1.0.9`` | ``-R-4.2.2`` | ``foss/2022b`` ``1.0.9`` | ``-R-4.3.2`` | ``gfbf/2023a`` +``1.0.9`` | ``-R-4.4.2`` | ``gfbf/2024a`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/verifyBamID.md b/docs/version-specific/supported-software/v/verifyBamID.md new file mode 100644 index 0000000000..b253df2154 --- /dev/null +++ b/docs/version-specific/supported-software/v/verifyBamID.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# verifyBamID + +verifyBamID is a software that verifies whether the reads in particular file match previously known genotypes for an individual (or group of individuals), and checks whether the reads are contaminated as a mixture of two samples. verifyBamID can detect sample contamination and swaps when external genotypes are available. When external genotypes are not available, verifyBamID still robustly detects sample swaps. + +*homepage*: + +version | toolchain +--------|---------- +``1.1.3`` | ``foss/2023b`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/v/vorbis-tools.md b/docs/version-specific/supported-software/v/vorbis-tools.md deleted file mode 100644 index bdbe877a15..0000000000 --- a/docs/version-specific/supported-software/v/vorbis-tools.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# vorbis-tools - -Command-line tools for creating and playing Ogg Vorbis files. - -*homepage*: - -version | toolchain ---------|---------- -``1.4.2`` | ``GCCcore/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/v/vsc-mympirun.md b/docs/version-specific/supported-software/v/vsc-mympirun.md index 983879fb92..d158971451 100644 --- a/docs/version-specific/supported-software/v/vsc-mympirun.md +++ b/docs/version-specific/supported-software/v/vsc-mympirun.md @@ -19,6 +19,7 @@ version | toolchain ``5.3.1`` | ``system`` ``5.4.0`` | ``system`` ``5.5.0`` | ``system`` +``5.5.1`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/v/vt.md b/docs/version-specific/supported-software/v/vt.md deleted file mode 100644 index 44f5bc43e9..0000000000 --- a/docs/version-specific/supported-software/v/vt.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# vt - -A tool set for short variant discovery in genetic sequence data. - -*homepage*: - -version | toolchain ---------|---------- -``0.57721`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/w/WCSLIB.md b/docs/version-specific/supported-software/w/WCSLIB.md index 4ef4e6fe40..80434ec7e4 100644 --- a/docs/version-specific/supported-software/w/WCSLIB.md +++ b/docs/version-specific/supported-software/w/WCSLIB.md @@ -10,7 +10,6 @@ The FITS "World Coordinate System" (WCS) standard defines keywords and usage tha version | toolchain --------|---------- -``7.11`` | ``GCC/11.2.0`` ``7.11`` | ``GCC/11.3.0`` ``7.11`` | ``GCC/13.2.0`` ``8.4`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/w/WIEN2k.md b/docs/version-specific/supported-software/w/WIEN2k.md index 39463450fc..0d59594ab8 100644 --- a/docs/version-specific/supported-software/w/WIEN2k.md +++ b/docs/version-specific/supported-software/w/WIEN2k.md @@ -10,8 +10,6 @@ The program package WIEN2k allows to perform electronic structure calculations o version | toolchain --------|---------- -``21.1`` | ``intel/2021b`` -``23.2`` | ``intel/2021b`` ``24.1`` | ``foss/2025b`` ``24.1`` | ``intel/2023a`` ``24.1`` | ``intel/2025b`` diff --git a/docs/version-specific/supported-software/w/Wannier90.md b/docs/version-specific/supported-software/w/Wannier90.md index 298d48441e..97a83c350c 100644 --- a/docs/version-specific/supported-software/w/Wannier90.md +++ b/docs/version-specific/supported-software/w/Wannier90.md @@ -11,7 +11,7 @@ A tool for obtaining maximally-localised Wannier functions version | toolchain --------|---------- ``3.1.0`` | ``NVHPC/25.1`` -``3.1.0`` | ``foss/2021b`` +``3.1.0`` | ``NVHPC/25.9-CUDA-12.9.1`` ``3.1.0`` | ``foss/2022a`` ``3.1.0`` | ``foss/2023a`` ``3.1.0`` | ``foss/2024a`` @@ -20,7 +20,6 @@ version | toolchain ``3.1.0`` | ``gomkl/2022a`` ``3.1.0`` | ``gomkl/2023a`` ``3.1.0`` | ``gomkl/2023b`` -``3.1.0`` | ``intel/2021b`` ``3.1.0`` | ``intel/2022a`` ``3.1.0`` | ``intel/2022b`` ``3.1.0`` | ``intel/2023a`` diff --git a/docs/version-specific/supported-software/w/Wayland.md b/docs/version-specific/supported-software/w/Wayland.md index 29ac784e7a..38c15e0169 100644 --- a/docs/version-specific/supported-software/w/Wayland.md +++ b/docs/version-specific/supported-software/w/Wayland.md @@ -11,7 +11,6 @@ Wayland is a project to define a protocol for a compositor to talk to its clien version | toolchain --------|---------- ``1.20.0`` | ``GCCcore/11.3.0`` -``1.21.0`` | ``GCCcore/11.2.0`` ``1.21.0`` | ``GCCcore/11.3.0`` ``1.22.0`` | ``GCCcore/12.2.0`` ``1.22.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/w/Waylandpp.md b/docs/version-specific/supported-software/w/Waylandpp.md index 232d008524..c6e9c4fc2e 100644 --- a/docs/version-specific/supported-software/w/Waylandpp.md +++ b/docs/version-specific/supported-software/w/Waylandpp.md @@ -10,7 +10,6 @@ Wayland is an object oriented display protocol, which features request and event version | toolchain --------|---------- -``1.0.0`` | ``GCCcore/11.2.0`` ``1.0.0`` | ``GCCcore/11.3.0`` ``1.0.0`` | ``GCCcore/12.3.0`` ``1.0.1`` | ``GCCcore/14.2.0`` diff --git a/docs/version-specific/supported-software/w/WebKitGTK+.md b/docs/version-specific/supported-software/w/WebKitGTK+.md index 1f2151ac87..a6553853b3 100644 --- a/docs/version-specific/supported-software/w/WebKitGTK+.md +++ b/docs/version-specific/supported-software/w/WebKitGTK+.md @@ -10,7 +10,6 @@ WebKitGTK+ is a full-featured port of the WebKit rendering engine, suitable for version | toolchain --------|---------- -``2.37.1`` | ``GCC/11.2.0`` ``2.40.4`` | ``GCC/11.3.0`` ``2.41.4`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/w/WhatsHap.md b/docs/version-specific/supported-software/w/WhatsHap.md index 03aec30307..6bd5015b92 100644 --- a/docs/version-specific/supported-software/w/WhatsHap.md +++ b/docs/version-specific/supported-software/w/WhatsHap.md @@ -10,7 +10,6 @@ WhatsHap is a software for phasing genomic variants using DNA sequencing reads, version | toolchain --------|---------- -``1.4`` | ``foss/2021b`` ``1.7`` | ``foss/2022a`` ``2.1`` | ``foss/2022b`` ``2.2`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/w/index.md b/docs/version-specific/supported-software/w/index.md index 3fd45573e1..deb697d06d 100644 --- a/docs/version-specific/supported-software/w/index.md +++ b/docs/version-specific/supported-software/w/index.md @@ -26,7 +26,6 @@ search: * [wfdb](wfdb.md) * [WGDgc](WGDgc.md) * [wget](wget.md) - * [wgsim](wgsim.md) * [WhatsHap](WhatsHap.md) * [Whisper](Whisper.md) * [whisper-ctranslate2](whisper-ctranslate2.md) diff --git a/docs/version-specific/supported-software/w/waLBerla.md b/docs/version-specific/supported-software/w/waLBerla.md index ba37c9b22d..10e82efe46 100644 --- a/docs/version-specific/supported-software/w/waLBerla.md +++ b/docs/version-specific/supported-software/w/waLBerla.md @@ -13,6 +13,7 @@ version | versionsuffix | toolchain ``6.1`` | | ``foss/2022b`` ``6.1`` | ``-CUDA-12.1.1`` | ``foss/2023a`` ``6.1`` | | ``foss/2023a`` +``7.2`` | | ``foss/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/wandb.md b/docs/version-specific/supported-software/w/wandb.md index 75e3a72ead..ff6587058a 100644 --- a/docs/version-specific/supported-software/w/wandb.md +++ b/docs/version-specific/supported-software/w/wandb.md @@ -13,7 +13,10 @@ version | toolchain ``0.13.4`` | ``GCCcore/11.3.0`` ``0.13.6`` | ``GCC/11.3.0`` ``0.16.1`` | ``GCC/12.3.0`` +``0.20.1`` | ``GCC/13.2.0`` ``0.20.1`` | ``GCC/13.3.0`` +``0.21.1`` | ``GCC/14.2.0`` +``0.25.1`` | ``GCC/14.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/websockify.md b/docs/version-specific/supported-software/w/websockify.md index b0a55dde63..0e85ff5ea9 100644 --- a/docs/version-specific/supported-software/w/websockify.md +++ b/docs/version-specific/supported-software/w/websockify.md @@ -12,6 +12,8 @@ version | toolchain --------|---------- ``0.13.0`` | ``gfbf/2023a`` ``0.13.0`` | ``gfbf/2024a`` +``0.13.0`` | ``gfbf/2025a`` +``0.13.0`` | ``gfbf/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/w/wget.md b/docs/version-specific/supported-software/w/wget.md index 618e57f900..adea79f93b 100644 --- a/docs/version-specific/supported-software/w/wget.md +++ b/docs/version-specific/supported-software/w/wget.md @@ -10,7 +10,6 @@ GNU Wget is a free software package for retrieving files using HTTP, HTTPS and F version | toolchain --------|---------- -``1.21.2`` | ``GCCcore/11.2.0`` ``1.21.3`` | ``GCCcore/11.3.0`` ``1.21.4`` | ``GCCcore/12.2.0`` ``1.21.4`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/w/wgsim.md b/docs/version-specific/supported-software/w/wgsim.md deleted file mode 100644 index 2ed3c61a21..0000000000 --- a/docs/version-specific/supported-software/w/wgsim.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# wgsim - -Wgsim is a small tool for simulating sequence reads from a reference genome. - -*homepage*: - -version | toolchain ---------|---------- -``20111017`` | ``GCC/11.2.0`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/w/worker.md b/docs/version-specific/supported-software/w/worker.md index 719a11d13f..fd84c915cf 100644 --- a/docs/version-specific/supported-software/w/worker.md +++ b/docs/version-specific/supported-software/w/worker.md @@ -10,8 +10,6 @@ The Worker framework has been developed to help deal with parameter exploration version | toolchain --------|---------- -``1.6.12`` | ``foss/2021b`` -``1.6.13`` | ``iimpi/2021b`` ``1.6.13`` | ``iimpi/2022b`` ``1.6.13`` | ``iimpi/2023a`` diff --git a/docs/version-specific/supported-software/w/wpebackend-fdo.md b/docs/version-specific/supported-software/w/wpebackend-fdo.md index 678499ea1a..6bdbd0772a 100644 --- a/docs/version-specific/supported-software/w/wpebackend-fdo.md +++ b/docs/version-specific/supported-software/w/wpebackend-fdo.md @@ -10,7 +10,6 @@ WPE WebKit allows embedders to create simple and performant systems based on Web version | toolchain --------|---------- -``1.13.1`` | ``GCCcore/11.2.0`` ``1.14.1`` | ``GCCcore/11.3.0`` ``1.15.90`` | ``GCCcore/12.3.0`` ``1.16.1`` | ``GCCcore/14.2.0`` diff --git a/docs/version-specific/supported-software/w/wtdbg2.md b/docs/version-specific/supported-software/w/wtdbg2.md index 52c31a6d97..e41c7a0254 100644 --- a/docs/version-specific/supported-software/w/wtdbg2.md +++ b/docs/version-specific/supported-software/w/wtdbg2.md @@ -10,7 +10,6 @@ Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio version | toolchain --------|---------- -``2.5`` | ``GCCcore/11.2.0`` ``2.5`` | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/w/wxPython.md b/docs/version-specific/supported-software/w/wxPython.md index bf0c9ca123..fb7f7932f9 100644 --- a/docs/version-specific/supported-software/w/wxPython.md +++ b/docs/version-specific/supported-software/w/wxPython.md @@ -10,7 +10,6 @@ Wraps the wxWidgets C++ toolkit and provides access to the user interface portio version | toolchain --------|---------- -``4.2.0`` | ``foss/2021b`` ``4.2.1`` | ``foss/2022a`` ``4.2.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/w/wxWidgets.md b/docs/version-specific/supported-software/w/wxWidgets.md index 4962617e4e..35bf169e92 100644 --- a/docs/version-specific/supported-software/w/wxWidgets.md +++ b/docs/version-specific/supported-software/w/wxWidgets.md @@ -10,8 +10,6 @@ wxWidgets is a C++ library that lets developers create applications for Windows, version | toolchain --------|---------- -``3.1.5`` | ``GCC/11.2.0`` -``3.2.0`` | ``GCC/11.2.0`` ``3.2.1`` | ``GCC/11.3.0`` ``3.2.2.1`` | ``GCC/12.2.0`` ``3.2.2.1`` | ``GCC/12.3.0`` diff --git a/docs/version-specific/supported-software/x/X11.md b/docs/version-specific/supported-software/x/X11.md index dfa32779a5..8b6d5b38cb 100644 --- a/docs/version-specific/supported-software/x/X11.md +++ b/docs/version-specific/supported-software/x/X11.md @@ -10,7 +10,6 @@ The X Window System (X11) is a windowing system for bitmap displays version | toolchain --------|---------- -``20210802`` | ``GCCcore/11.2.0`` ``20220504`` | ``GCCcore/11.3.0`` ``20221110`` | ``GCCcore/12.2.0`` ``20230603`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/x/XCFun.md b/docs/version-specific/supported-software/x/XCFun.md index fa622f5c6b..5ec3cf2957 100644 --- a/docs/version-specific/supported-software/x/XCFun.md +++ b/docs/version-specific/supported-software/x/XCFun.md @@ -14,6 +14,7 @@ version | toolchain ``2.1.1`` | ``GCCcore/12.2.0`` ``2.1.1`` | ``GCCcore/12.3.0`` ``2.1.1`` | ``GCCcore/14.2.0`` +``2.1.1`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/XCrySDen.md b/docs/version-specific/supported-software/x/XCrySDen.md index 11bce4a348..1672c6a1f4 100644 --- a/docs/version-specific/supported-software/x/XCrySDen.md +++ b/docs/version-specific/supported-software/x/XCrySDen.md @@ -12,7 +12,6 @@ version | toolchain --------|---------- ``1.6.2`` | ``foss/2022a`` ``1.6.2`` | ``foss/2024a`` -``1.6.2`` | ``intel/2021b`` ``1.6.2`` | ``intel/2022a`` diff --git a/docs/version-specific/supported-software/x/XML-Compile.md b/docs/version-specific/supported-software/x/XML-Compile.md index 23fee88228..b8ca6ea346 100644 --- a/docs/version-specific/supported-software/x/XML-Compile.md +++ b/docs/version-specific/supported-software/x/XML-Compile.md @@ -10,9 +10,10 @@ Perl module for compilation based XML processing version | toolchain --------|---------- -``1.63`` | ``GCCcore/11.2.0`` ``1.63`` | ``GCCcore/12.2.0`` ``1.63`` | ``GCCcore/13.2.0`` +``1.64`` | ``GCCcore/14.2.0`` +``1.64`` | ``GCCcore/14.3.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/XML-LibXML.md b/docs/version-specific/supported-software/x/XML-LibXML.md index 0800c6eec8..aca6451164 100644 --- a/docs/version-specific/supported-software/x/XML-LibXML.md +++ b/docs/version-specific/supported-software/x/XML-LibXML.md @@ -10,7 +10,6 @@ Perl binding for libxml2 version | toolchain --------|---------- -``2.0207`` | ``GCCcore/11.2.0`` ``2.0207`` | ``GCCcore/11.3.0`` ``2.0208`` | ``GCCcore/12.2.0`` ``2.0209`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/x/XZ.md b/docs/version-specific/supported-software/x/XZ.md index 7de51924d4..3afb1270e5 100644 --- a/docs/version-specific/supported-software/x/XZ.md +++ b/docs/version-specific/supported-software/x/XZ.md @@ -10,7 +10,6 @@ xz: XZ utilities version | toolchain --------|---------- -``5.2.5`` | ``GCCcore/11.2.0`` ``5.2.5`` | ``GCCcore/11.3.0`` ``5.2.7`` | ``GCCcore/12.2.0`` ``5.4.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/x/XeniumRanger.md b/docs/version-specific/supported-software/x/XeniumRanger.md index ec815fdccd..cdb9541c5a 100644 --- a/docs/version-specific/supported-software/x/XeniumRanger.md +++ b/docs/version-specific/supported-software/x/XeniumRanger.md @@ -13,6 +13,7 @@ version | toolchain ``1.7.1`` | ``system`` ``2.0.1`` | ``system`` ``3.0.1`` | ``system`` +``4.0.0`` | ``system`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/Xerces-C++.md b/docs/version-specific/supported-software/x/Xerces-C++.md index 25f3ed82e1..8dcf551dea 100644 --- a/docs/version-specific/supported-software/x/Xerces-C++.md +++ b/docs/version-specific/supported-software/x/Xerces-C++.md @@ -10,7 +10,6 @@ Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerce version | toolchain --------|---------- -``3.2.3`` | ``GCCcore/11.2.0`` ``3.2.4`` | ``GCCcore/11.3.0`` ``3.2.4`` | ``GCCcore/12.2.0`` ``3.2.4`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/x/XlsxWriter.md b/docs/version-specific/supported-software/x/XlsxWriter.md index 40f2416a0a..015166cad4 100644 --- a/docs/version-specific/supported-software/x/XlsxWriter.md +++ b/docs/version-specific/supported-software/x/XlsxWriter.md @@ -10,7 +10,6 @@ A Python module for creating Excel XLSX files version | toolchain --------|---------- -``3.0.2`` | ``GCCcore/11.2.0`` ``3.0.8`` | ``GCCcore/11.3.0`` ``3.1.2`` | ``GCCcore/12.2.0`` ``3.1.3`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/x/Xvfb.md b/docs/version-specific/supported-software/x/Xvfb.md index 7ad8f5d75b..c0e3b2fb35 100644 --- a/docs/version-specific/supported-software/x/Xvfb.md +++ b/docs/version-specific/supported-software/x/Xvfb.md @@ -10,7 +10,6 @@ Xvfb is an X server that can run on machines with no display hardware and no phy version | toolchain --------|---------- -``1.20.13`` | ``GCCcore/11.2.0`` ``21.1.14`` | ``GCCcore/13.3.0`` ``21.1.18`` | ``GCCcore/14.2.0`` ``21.1.18`` | ``GCCcore/14.3.0`` diff --git a/docs/version-specific/supported-software/x/Xwayland.md b/docs/version-specific/supported-software/x/Xwayland.md new file mode 100644 index 0000000000..66ccc9525e --- /dev/null +++ b/docs/version-specific/supported-software/x/Xwayland.md @@ -0,0 +1,17 @@ +--- +search: + boost: 0.5 +--- +# Xwayland + +Xorg is a full featured X server that was originally designed for UNIX and UNIX-like operating systems + +*homepage*: + +version | toolchain +--------|---------- +``24.1.9`` | ``GCCcore/14.3.0`` + + +*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* + diff --git a/docs/version-specific/supported-software/x/index.md b/docs/version-specific/supported-software/x/index.md index 512fd7e35f..9e77cc978e 100644 --- a/docs/version-specific/supported-software/x/index.md +++ b/docs/version-specific/supported-software/x/index.md @@ -40,6 +40,7 @@ search: * [XPLOR-NIH](XPLOR-NIH.md) * [xprop](xprop.md) * [xproto](xproto.md) + * [xraylib](xraylib.md) * [xschem](xschem.md) * [xskillscore](xskillscore.md) * [xtb](xtb.md) @@ -48,6 +49,7 @@ search: * [xterm](xterm.md) * [xtrans](xtrans.md) * [Xvfb](Xvfb.md) + * [Xwayland](Xwayland.md) * [xxd](xxd.md) * [xxHash](xxHash.md) * [XZ](XZ.md) diff --git a/docs/version-specific/supported-software/x/x13as.md b/docs/version-specific/supported-software/x/x13as.md index e951c2ac08..46166d7efe 100644 --- a/docs/version-specific/supported-software/x/x13as.md +++ b/docs/version-specific/supported-software/x/x13as.md @@ -10,7 +10,6 @@ X-13ARIMA-SEATS is seasonal adjustment software produced, distributed, and maint version | toolchain --------|---------- -``1-1-b59`` | ``GCCcore/11.2.0`` ``1-1-b60`` | ``GCCcore/12.2.0`` ``1-1-b60`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/x/x264.md b/docs/version-specific/supported-software/x/x264.md index 848b673f0b..ab4d263272 100644 --- a/docs/version-specific/supported-software/x/x264.md +++ b/docs/version-specific/supported-software/x/x264.md @@ -10,7 +10,6 @@ x264 is a free software library and application for encoding video streams into version | toolchain --------|---------- -``20210613`` | ``GCCcore/11.2.0`` ``20220620`` | ``GCCcore/11.3.0`` ``20230226`` | ``GCCcore/12.2.0`` ``20230226`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/x/x265.md b/docs/version-specific/supported-software/x/x265.md index e4713184a5..1a7e42925d 100644 --- a/docs/version-specific/supported-software/x/x265.md +++ b/docs/version-specific/supported-software/x/x265.md @@ -10,7 +10,6 @@ x265 is a free software library and application for encoding video streams into version | toolchain --------|---------- -``3.5`` | ``GCCcore/11.2.0`` ``3.5`` | ``GCCcore/11.3.0`` ``3.5`` | ``GCCcore/12.2.0`` ``3.5`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/x/xarray.md b/docs/version-specific/supported-software/x/xarray.md index aa58c96b41..9969b7a411 100644 --- a/docs/version-specific/supported-software/x/xarray.md +++ b/docs/version-specific/supported-software/x/xarray.md @@ -10,8 +10,6 @@ xarray (formerly xray) is an open source project and Python package that aims to version | toolchain --------|---------- -``0.20.1`` | ``foss/2021b`` -``0.20.1`` | ``intel/2021b`` ``2022.6.0`` | ``foss/2022a`` ``2022.6.0`` | ``intel/2022a`` ``2022.9.0`` | ``foss/2022a`` @@ -19,7 +17,10 @@ version | toolchain ``2023.9.0`` | ``gfbf/2023a`` ``2024.11.0`` | ``gfbf/2024a`` ``2024.5.0`` | ``gfbf/2023b`` +``2024.5.0`` | ``iimkl/2023b`` ``2025.10.0`` | ``gfbf/2025b`` +``2025.10.0`` | ``iimkl/2025b`` +``2025.10.0`` | ``lfbf/2025b`` ``2025.7.0`` | ``gfbf/2025a`` diff --git a/docs/version-specific/supported-software/x/xmlf90.md b/docs/version-specific/supported-software/x/xmlf90.md index 9258adb468..b1bc1dfd5d 100644 --- a/docs/version-specific/supported-software/x/xmlf90.md +++ b/docs/version-specific/supported-software/x/xmlf90.md @@ -4,14 +4,12 @@ search: --- # xmlf90 -xmlf90 is a basic XML parsing library written in Fortran. +A fast XML parser and generator in Fortran -*homepage*: +*homepage*: version | toolchain --------|---------- -``1.5.4`` | ``GCC/11.2.0`` -``1.5.4`` | ``intel-compilers/2021.4.0`` ``1.5.6`` | ``GCC/11.3.0`` ``1.6.3`` | ``GCC/12.3.0`` ``1.6.3`` | ``GCC/13.3.0`` diff --git a/docs/version-specific/supported-software/x/xorg-macros.md b/docs/version-specific/supported-software/x/xorg-macros.md index c5adfec74d..fd798bab8a 100644 --- a/docs/version-specific/supported-software/x/xorg-macros.md +++ b/docs/version-specific/supported-software/x/xorg-macros.md @@ -10,7 +10,6 @@ X.org macros utilities. version | toolchain --------|---------- -``1.19.3`` | ``GCCcore/11.2.0`` ``1.19.3`` | ``GCCcore/11.3.0`` ``1.19.3`` | ``GCCcore/12.2.0`` ``1.20.0`` | ``GCCcore/12.3.0`` @@ -18,6 +17,7 @@ version | toolchain ``1.20.1`` | ``GCCcore/13.3.0`` ``1.20.2`` | ``GCCcore/14.2.0`` ``1.20.2`` | ``GCCcore/14.3.0`` +``1.20.2`` | ``GCCcore/15.2.0`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/xprop.md b/docs/version-specific/supported-software/x/xprop.md index 8c25c0e351..e03193e35e 100644 --- a/docs/version-specific/supported-software/x/xprop.md +++ b/docs/version-specific/supported-software/x/xprop.md @@ -10,7 +10,6 @@ The xprop utility is for displaying window and font properties in an X server. version | toolchain --------|---------- -``1.2.5`` | ``GCCcore/11.2.0`` ``1.2.5`` | ``GCCcore/11.3.0`` ``1.2.5`` | ``GCCcore/12.2.0`` ``1.2.6`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/x/xproto.md b/docs/version-specific/supported-software/x/xproto.md index dcb38aebe7..0cdba9d109 100644 --- a/docs/version-specific/supported-software/x/xproto.md +++ b/docs/version-specific/supported-software/x/xproto.md @@ -10,7 +10,6 @@ X protocol and ancillary headers version | toolchain --------|---------- -``7.0.31`` | ``GCCcore/11.2.0`` ``7.0.31`` | ``GCCcore/11.3.0`` ``7.0.31`` | ``GCCcore/12.3.0`` ``7.0.31`` | ``GCCcore/13.2.0`` diff --git a/docs/version-specific/supported-software/s/Short-Pair.md b/docs/version-specific/supported-software/x/xraylib.md similarity index 76% rename from docs/version-specific/supported-software/s/Short-Pair.md rename to docs/version-specific/supported-software/x/xraylib.md index 28250dfaf8..d30344829c 100644 --- a/docs/version-specific/supported-software/s/Short-Pair.md +++ b/docs/version-specific/supported-software/x/xraylib.md @@ -2,15 +2,15 @@ search: boost: 0.5 --- -# Short-Pair +# xraylib -Sensitive Short Read Homology Search for Paired-End Reads +Quantitative estimate of elemental composition by spectroscopic and imaging techniques using X-ray fluorescence requires the availability of accurate data of X-ray interaction with matter. -*homepage*: +*homepage*: version | toolchain --------|---------- -``20170125`` | ``foss/2021b`` +``4.2.1`` | ``gfbf/2025b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/x/xtb.md b/docs/version-specific/supported-software/x/xtb.md index ad2cdc1cbe..d5aab5bd82 100644 --- a/docs/version-specific/supported-software/x/xtb.md +++ b/docs/version-specific/supported-software/x/xtb.md @@ -10,8 +10,6 @@ xtb - An extended tight-binding semi-empirical program package. version | toolchain --------|---------- -``6.4.1`` | ``foss/2021b`` -``6.5.0`` | ``foss/2021b`` ``6.5.1`` | ``foss/2022a`` ``6.6.0`` | ``foss/2022a`` ``6.6.0`` | ``intel/2022a`` diff --git a/docs/version-specific/supported-software/x/xtensor.md b/docs/version-specific/supported-software/x/xtensor.md index 16ca426773..a26d79e9d3 100644 --- a/docs/version-specific/supported-software/x/xtensor.md +++ b/docs/version-specific/supported-software/x/xtensor.md @@ -10,7 +10,6 @@ xtensor is a C++ library meant for numerical analysis with multi-dimensional arr version | toolchain --------|---------- -``0.24.0`` | ``foss/2021b`` ``0.24.7`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/x/xxHash.md b/docs/version-specific/supported-software/x/xxHash.md index c20045414d..5f78522190 100644 --- a/docs/version-specific/supported-software/x/xxHash.md +++ b/docs/version-specific/supported-software/x/xxHash.md @@ -10,7 +10,6 @@ xxHash is an extremely fast non-cryptographic hash algorithm, working at RAM spe version | toolchain --------|---------- -``0.8.0`` | ``GCCcore/11.2.0`` ``0.8.1`` | ``GCCcore/11.3.0`` ``0.8.1`` | ``GCCcore/12.2.0`` ``0.8.2`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/x/xxd.md b/docs/version-specific/supported-software/x/xxd.md index 0f19e8c922..67730219df 100644 --- a/docs/version-specific/supported-software/x/xxd.md +++ b/docs/version-specific/supported-software/x/xxd.md @@ -10,7 +10,6 @@ xxd is part of the VIM package and this will only install xxd, not vim! xxd conv version | toolchain --------|---------- -``8.2.4220`` | ``GCCcore/11.2.0`` ``8.2.4220`` | ``GCCcore/11.3.0`` ``9.0.1696`` | ``GCCcore/12.2.0`` ``9.0.2112`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/y/YACS.md b/docs/version-specific/supported-software/y/YACS.md index f99351cf27..26f02610c8 100644 --- a/docs/version-specific/supported-software/y/YACS.md +++ b/docs/version-specific/supported-software/y/YACS.md @@ -10,7 +10,6 @@ YACS was created as a lightweight library to define and manage system configurat version | toolchain --------|---------- -``0.1.8`` | ``GCCcore/11.2.0`` ``0.1.8`` | ``GCCcore/11.3.0`` ``0.1.8`` | ``GCCcore/12.3.0`` ``0.1.8`` | ``GCCcore/13.3.0`` diff --git a/docs/version-specific/supported-software/y/YAXT.md b/docs/version-specific/supported-software/y/YAXT.md index 91f55a5202..58fc1aca4b 100644 --- a/docs/version-specific/supported-software/y/YAXT.md +++ b/docs/version-specific/supported-software/y/YAXT.md @@ -13,8 +13,6 @@ version | toolchain ``0.10.0`` | ``gompi/2022b`` ``0.11.3`` | ``gompi/2024a`` ``0.11.4`` | ``gompi/2025b`` -``0.9.2`` | ``iimpi/2021b`` -``0.9.2.1`` | ``gompi/2021b`` *(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* diff --git a/docs/version-specific/supported-software/y/Yambo.md b/docs/version-specific/supported-software/y/Yambo.md deleted file mode 100644 index 9acba2d248..0000000000 --- a/docs/version-specific/supported-software/y/Yambo.md +++ /dev/null @@ -1,17 +0,0 @@ ---- -search: - boost: 0.5 ---- -# Yambo - -Yambo is a FORTRAN/C code for Many-Body calculations in solid state and molecular physics. Yambo relies on the Kohn-Sham wavefunctions generated by two DFT public codes: abinit, and PWscf. - -*homepage*: - -version | toolchain ---------|---------- -``5.1.2`` | ``intel/2021b`` - - -*(quick links: [(all)](../index.md) - [0](../0/index.md) - [a](../a/index.md) - [b](../b/index.md) - [c](../c/index.md) - [d](../d/index.md) - [e](../e/index.md) - [f](../f/index.md) - [g](../g/index.md) - [h](../h/index.md) - [i](../i/index.md) - [j](../j/index.md) - [k](../k/index.md) - [l](../l/index.md) - [m](../m/index.md) - [n](../n/index.md) - [o](../o/index.md) - [p](../p/index.md) - [q](../q/index.md) - [r](../r/index.md) - [s](../s/index.md) - [t](../t/index.md) - [u](../u/index.md) - [v](../v/index.md) - [w](../w/index.md) - [x](../x/index.md) - [y](../y/index.md) - [z](../z/index.md))* - diff --git a/docs/version-specific/supported-software/y/Yasm.md b/docs/version-specific/supported-software/y/Yasm.md index 12b4beb7fb..8a43fd29c6 100644 --- a/docs/version-specific/supported-software/y/Yasm.md +++ b/docs/version-specific/supported-software/y/Yasm.md @@ -10,7 +10,6 @@ Yasm: Complete rewrite of the NASM assembler with BSD license version | toolchain --------|---------- -``1.3.0`` | ``GCCcore/11.2.0`` ``1.3.0`` | ``GCCcore/11.3.0`` ``1.3.0`` | ``GCCcore/12.2.0`` ``1.3.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/y/index.md b/docs/version-specific/supported-software/y/index.md index e1c322acba..3515a76eff 100644 --- a/docs/version-specific/supported-software/y/index.md +++ b/docs/version-specific/supported-software/y/index.md @@ -12,7 +12,6 @@ search: * [YACS](YACS.md) * [yaff](yaff.md) * [YaHS](YaHS.md) - * [Yambo](Yambo.md) * [yaml-cpp](yaml-cpp.md) * [Yasm](Yasm.md) * [YAXT](YAXT.md) diff --git a/docs/version-specific/supported-software/z/Z3.md b/docs/version-specific/supported-software/z/Z3.md index 2160a91a2b..ebd0f9a286 100644 --- a/docs/version-specific/supported-software/z/Z3.md +++ b/docs/version-specific/supported-software/z/Z3.md @@ -19,8 +19,7 @@ version | versionsuffix | toolchain ``4.13.0`` | | ``GCCcore/13.3.0`` ``4.13.4`` | | ``GCCcore/14.2.0`` ``4.15.1`` | | ``GCCcore/14.3.0`` -``4.8.12`` | ``-Python-3.9.6`` | ``GCCcore/11.2.0`` -``4.8.12`` | | ``GCCcore/11.2.0`` +``4.15.4`` | | ``GCCcore/15.2.0`` ``4.8.16`` | ``-Python-3.10.4`` | ``GCCcore/11.3.0`` ``4.8.16`` | | ``GCCcore/11.3.0`` diff --git a/docs/version-specific/supported-software/z/ZeroMQ.md b/docs/version-specific/supported-software/z/ZeroMQ.md index 48853f414d..678d0785f2 100644 --- a/docs/version-specific/supported-software/z/ZeroMQ.md +++ b/docs/version-specific/supported-software/z/ZeroMQ.md @@ -10,7 +10,6 @@ ZeroMQ looks like an embeddable networking library but acts like a concurrency f version | toolchain --------|---------- -``4.3.4`` | ``GCCcore/11.2.0`` ``4.3.4`` | ``GCCcore/11.3.0`` ``4.3.4`` | ``GCCcore/12.2.0`` ``4.3.4`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/z/Zip.md b/docs/version-specific/supported-software/z/Zip.md index bb14bd9180..a0976434f7 100644 --- a/docs/version-specific/supported-software/z/Zip.md +++ b/docs/version-specific/supported-software/z/Zip.md @@ -10,7 +10,6 @@ Zip is a compression and file packaging/archive utility. Although highly compati version | toolchain --------|---------- -``3.0`` | ``GCCcore/11.2.0`` ``3.0`` | ``GCCcore/11.3.0`` ``3.0`` | ``GCCcore/12.2.0`` ``3.0`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/supported-software/z/zarr.md b/docs/version-specific/supported-software/z/zarr.md index a97b516f33..b4608dc114 100644 --- a/docs/version-specific/supported-software/z/zarr.md +++ b/docs/version-specific/supported-software/z/zarr.md @@ -10,7 +10,6 @@ Zarr is a Python package providing an implementation of compressed, chunked, N-d version | toolchain --------|---------- -``2.13.3`` | ``foss/2021b`` ``2.13.3`` | ``foss/2022a`` ``2.16.0`` | ``foss/2022b`` ``2.17.1`` | ``foss/2023a`` diff --git a/docs/version-specific/supported-software/z/zlib.md b/docs/version-specific/supported-software/z/zlib.md index 78f8101ca5..945444bff6 100644 --- a/docs/version-specific/supported-software/z/zlib.md +++ b/docs/version-specific/supported-software/z/zlib.md @@ -4,13 +4,12 @@ search: --- # zlib -zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. +zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. *homepage*: version | toolchain --------|---------- -``1.2.11`` | ``GCCcore/11.2.0`` ``1.2.11`` | ``system`` ``1.2.12`` | ``GCCcore/11.3.0`` ``1.2.12`` | ``GCCcore/12.1.0`` diff --git a/docs/version-specific/supported-software/z/zstd.md b/docs/version-specific/supported-software/z/zstd.md index 0f0a649141..d77cf16fc4 100644 --- a/docs/version-specific/supported-software/z/zstd.md +++ b/docs/version-specific/supported-software/z/zstd.md @@ -10,7 +10,6 @@ Zstandard is a real-time compression algorithm, providing high compression ratio version | toolchain --------|---------- -``1.5.0`` | ``GCCcore/11.2.0`` ``1.5.2`` | ``GCCcore/11.3.0`` ``1.5.2`` | ``GCCcore/12.2.0`` ``1.5.5`` | ``GCCcore/12.3.0`` diff --git a/docs/version-specific/toolchain-opts.md b/docs/version-specific/toolchain-opts.md index 976c9a6bbd..3ffb2d8043 100644 --- a/docs/version-specific/toolchain-opts.md +++ b/docs/version-specific/toolchain-opts.md @@ -2,7 +2,7 @@ *(see also* ``eb --avail-toolchain-opts `` *)* -[cgmpich](#cgmpich) - [cgmpolf](#cgmpolf) - [cgmvapich2](#cgmvapich2) - [cgmvolf](#cgmvolf) - [cgompi](#cgompi) - [cgoolf](#cgoolf) - [ClangGCC](#clanggcc) - [CrayCCE](#craycce) - [CrayGNU](#craygnu) - [CrayIntel](#crayintel) - [CrayPGI](#craypgi) - [FCC](#fcc) - [ffmpi](#ffmpi) - [foss](#foss) - [fosscuda](#fosscuda) - [Fujitsu](#fujitsu) - [GCC](#gcc) - [GCCcore](#gcccore) - [gcccuda](#gcccuda) - [gfbf](#gfbf) - [gimkl](#gimkl) - [gimpi](#gimpi) - [gimpic](#gimpic) - [giolf](#giolf) - [giolfc](#giolfc) - [gmacml](#gmacml) - [gmkl](#gmkl) - [gmklc](#gmklc) - [gmpflf](#gmpflf) - [gmpich](#gmpich) - [gmpich2](#gmpich2) - [gmpit](#gmpit) - [gmpolf](#gmpolf) - [gmvapich2](#gmvapich2) - [gmvolf](#gmvolf) - [GNU](#gnu) - [goalf](#goalf) - [gobff](#gobff) - [goblf](#goblf) - [gofbf](#gofbf) - [golf](#golf) - [golfc](#golfc) - [gomkl](#gomkl) - [gomklc](#gomklc) - [gompi](#gompi) - [gompic](#gompic) - [goolf](#goolf) - [goolfc](#goolfc) - [gpsmpi](#gpsmpi) - [gpsolf](#gpsolf) - [gqacml](#gqacml) - [gsmpi](#gsmpi) - [gsolf](#gsolf) - [iccifort](#iccifort) - [iccifortcuda](#iccifortcuda) - [ictce](#ictce) - [ifbf](#ifbf) - [iibff](#iibff) - [iimkl](#iimkl) - [iimklc](#iimklc) - [iimpi](#iimpi) - [iimpic](#iimpic) - [iiqmpi](#iiqmpi) - [impich](#impich) - [impmkl](#impmkl) - [intel-compilers](#intel-compilers) - [intel-para](#intel-para) - [intel](#intel) - [intelcuda](#intelcuda) - [iofbf](#iofbf) - [iomkl](#iomkl) - [iomklc](#iomklc) - [iompi](#iompi) - [iompic](#iompic) - [ipsmpi](#ipsmpi) - [iqacml](#iqacml) - [ismkl](#ismkl) - [lfbf](#lfbf) - [lfoss](#lfoss) - [llvm-compilers](#llvm-compilers) - [lmpflf](#lmpflf) - [lmpich](#lmpich) - [lompi](#lompi) - [lpsflf](#lpsflf) - [lpsmpi](#lpsmpi) - [NVHPC](#nvhpc) - [nvidia-compilers](#nvidia-compilers) - [nvofbf](#nvofbf) - [nvompi](#nvompi) - [nvompic](#nvompic) - [nvpsmpi](#nvpsmpi) - [nvpsmpic](#nvpsmpic) - [PGI](#pgi) - [pmkl](#pmkl) - [pomkl](#pomkl) - [pompi](#pompi) - [system](#system) - [xlcxlf](#xlcxlf) - [xlmpich](#xlmpich) - [xlmpich2](#xlmpich2) - [xlmvapich2](#xlmvapich2) - [xlompi](#xlompi) +[cgmpich](#cgmpich) - [cgmpolf](#cgmpolf) - [cgmvapich2](#cgmvapich2) - [cgmvolf](#cgmvolf) - [cgompi](#cgompi) - [cgoolf](#cgoolf) - [ClangGCC](#clanggcc) - [CrayCCE](#craycce) - [CrayGNU](#craygnu) - [CrayIntel](#crayintel) - [CrayPGI](#craypgi) - [FCC](#fcc) - [ffmpi](#ffmpi) - [foss](#foss) - [fosscuda](#fosscuda) - [Fujitsu](#fujitsu) - [GCC](#gcc) - [GCCcore](#gcccore) - [gcccuda](#gcccuda) - [gfbf](#gfbf) - [gimkl](#gimkl) - [gimpi](#gimpi) - [gimpic](#gimpic) - [giolf](#giolf) - [giolfc](#giolfc) - [gmacml](#gmacml) - [gmkl](#gmkl) - [gmklc](#gmklc) - [gmpflf](#gmpflf) - [gmpich](#gmpich) - [gmpich2](#gmpich2) - [gmpit](#gmpit) - [gmpolf](#gmpolf) - [gmvapich2](#gmvapich2) - [gmvolf](#gmvolf) - [GNU](#gnu) - [goalf](#goalf) - [gobff](#gobff) - [goblf](#goblf) - [gofbf](#gofbf) - [golf](#golf) - [golfc](#golfc) - [gomkl](#gomkl) - [gomklc](#gomklc) - [gompi](#gompi) - [gompic](#gompic) - [goolf](#goolf) - [goolfc](#goolfc) - [gpsmpi](#gpsmpi) - [gpsolf](#gpsolf) - [gqacml](#gqacml) - [gsmpi](#gsmpi) - [gsolf](#gsolf) - [iccifort](#iccifort) - [iccifortcuda](#iccifortcuda) - [ictce](#ictce) - [ifbf](#ifbf) - [iibff](#iibff) - [iimkl](#iimkl) - [iimklc](#iimklc) - [iimpi](#iimpi) - [iimpic](#iimpic) - [iiqmpi](#iiqmpi) - [impich](#impich) - [impmkl](#impmkl) - [intel-compilers](#intel-compilers) - [intel-para](#intel-para) - [intel](#intel) - [intelcuda](#intelcuda) - [iofbf](#iofbf) - [iomkl](#iomkl) - [iomklc](#iomklc) - [iompi](#iompi) - [iompic](#iompic) - [ipsmpi](#ipsmpi) - [iqacml](#iqacml) - [ismkl](#ismkl) - [lfbf](#lfbf) - [lfoss](#lfoss) - [llvm-compilers](#llvm-compilers) - [lmpflf](#lmpflf) - [lmpich](#lmpich) - [lompi](#lompi) - [lpsflf](#lpsflf) - [lpsmpi](#lpsmpi) - [NVHPC](#nvhpc) - [nvidia-compilers](#nvidia-compilers) - [nvofbf](#nvofbf) - [nvompi](#nvompi) - [nvompic](#nvompic) - [nvpsmpi](#nvpsmpi) - [nvpsmpic](#nvpsmpic) - [PGI](#pgi) - [pmkl](#pmkl) - [pomkl](#pomkl) - [pompi](#pompi) - [rfbf](#rfbf) - [rfoss](#rfoss) - [rocm-compilers](#rocm-compilers) - [rompi](#rompi) - [system](#system) - [xlcxlf](#xlcxlf) - [xlmpich](#xlmpich) - [xlmpich2](#xlmpich2) - [xlmvapich2](#xlmvapich2) - [xlompi](#xlompi) ## cgmpich @@ -4106,6 +4106,184 @@ option |description ``verbose`` |Verbose output |``False`` ``veryloose`` |Very loose precision |``False`` +## rfbf + +### Available options for rfbf toolchain + +option |description |default +---------------------------|---------------------------------------------------------------------------------------------------------------------|--------- +``basic-block-vectorize`` |Basic block vectorization |``False`` +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``lld_undefined_version`` |-Wl,--undefined-version - Allow unused version in version script |``False`` +``loop-vectorize`` |Loop vectorization |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no_int_conversion_error``|-Wno-error=int-conversion - Avoid some failures that are normally ignored by GCC |``True`` +``no_unused_args`` |-Wno-unused-command-line-argument - Avoid some failures in CMake correctly recognizing feature due to linker warnings|``True`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` + +## rfoss + +### Available options for rfoss toolchain + +option |description |default +---------------------------|---------------------------------------------------------------------------------------------------------------------|--------- +``basic-block-vectorize`` |Basic block vectorization |``False`` +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``lld_undefined_version`` |-Wl,--undefined-version - Allow unused version in version script |``False`` +``loop-vectorize`` |Loop vectorization |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no_int_conversion_error``|-Wno-error=int-conversion - Avoid some failures that are normally ignored by GCC |``True`` +``no_unused_args`` |-Wno-unused-command-line-argument - Avoid some failures in CMake correctly recognizing feature due to linker warnings|``True`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` + +## rocm-compilers + +### Available options for rocm-compilers toolchain + +option |description |default +---------------------------|---------------------------------------------------------------------------------------------------------------------|--------- +``basic-block-vectorize`` |Basic block vectorization |``False`` +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``lld_undefined_version`` |-Wl,--undefined-version - Allow unused version in version script |``False`` +``loop-vectorize`` |Loop vectorization |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no_int_conversion_error``|-Wno-error=int-conversion - Avoid some failures that are normally ignored by GCC |``True`` +``no_unused_args`` |-Wno-unused-command-line-argument - Avoid some failures in CMake correctly recognizing feature due to linker warnings|``True`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` + +## rompi + +### Available options for rompi toolchain + +option |description |default +---------------------------|---------------------------------------------------------------------------------------------------------------------|--------- +``basic-block-vectorize`` |Basic block vectorization |``False`` +``cciscxx`` |Use CC as CXX |``False`` +``cstd`` |Specify C standard |``None`` +``debug`` |Keep debug symbols |``None`` +``defaultopt`` |Default compiler optimizations |``False`` +``defaultprec`` |Default precision |``False`` +``extra_cflags`` |Specify extra CFLAGS options. |``None`` +``extra_cxxflags`` |Specify extra CXXFLAGS options. |``None`` +``extra_f90flags`` |Specify extra F90FLAGS options. |``None`` +``extra_fcflags`` |Specify extra FCFLAGS options. |``None`` +``extra_fflags`` |Specify extra FFLAGS options. |``None`` +``i8`` |Integers are 8 byte integers |``False`` +``ieee`` |Adhere to IEEE-754 rules |``False`` +``lld_undefined_version`` |-Wl,--undefined-version - Allow unused version in version script |``False`` +``loop-vectorize`` |Loop vectorization |``False`` +``loose`` |Loose precision |``False`` +``lowopt`` |Low compiler optimizations |``False`` +``no_int_conversion_error``|-Wno-error=int-conversion - Avoid some failures that are normally ignored by GCC |``True`` +``no_unused_args`` |-Wno-unused-command-line-argument - Avoid some failures in CMake correctly recognizing feature due to linker warnings|``True`` +``noopt`` |Disable compiler optimizations |``False`` +``openmp`` |Enable OpenMP |``False`` +``opt`` |High compiler optimizations |``False`` +``optarch`` |Enable architecture optimizations |``True`` +``packed-linker-options`` |Pack the linker options as comma separated list |``False`` +``pic`` |Use PIC |``False`` +``precise`` |High precision |``False`` +``r8`` |Real is 8 byte real |``False`` +``rpath`` |Use RPATH wrappers when --rpath is enabled in EasyBuild configuration |``True`` +``search-path-cpp-headers``|Search path used at build time for include directories |``None`` +``search-path-linker`` |Search path used at build time by the linker for libraries |``None`` +``shared`` |Build shared library |``False`` +``static`` |Build static library |``False`` +``strict`` |Strict (highest) precision |``False`` +``unroll`` |Unroll loops |``False`` +``usempi`` |Use MPI compiler as default compiler |``False`` +``vectorize`` |Enable compiler auto-vectorization, default except for noopt and lowopt |``None`` +``verbose`` |Verbose output |``False`` +``veryloose`` |Very loose precision |``False`` + ## system ### Available options for system toolchain diff --git a/docs/version-specific/toolchains.md b/docs/version-specific/toolchains.md index 226a12f9ec..aabff6bc6c 100644 --- a/docs/version-specific/toolchains.md +++ b/docs/version-specific/toolchains.md @@ -98,6 +98,10 @@ Name |Compiler(s) |MPI |Linear algebra |FF **pmkl** |PGI |*(none)* |imkl |imkl **pomkl** |PGI |OpenMPI |imkl |imkl **pompi** |PGI |OpenMPI |*(none)* |*(none)* +**rfbf** |rocm-compilers |*(none)* |FlexiBLAS |FFTW +**rfoss** |rocm-compilers |OpenMPI |FlexiBLAS, ScaLAPACK |FFTW +**rocm-compilers** |rocm-compilers |*(none)* |*(none)* |*(none)* +**rompi** |rocm-compilers |OpenMPI |*(none)* |*(none)* **system** |*(none)* |*(none)* |*(none)* |*(none)* **xlcxlf** |xlc, xlf |*(none)* |*(none)* |*(none)* **xlmpich** |xlc, xlf |MPICH |*(none)* |*(none)*