Migrate all MARSS docs to Roxygen2 (bulk .Rd → Roxygen2 conversion)#2

Draft

eeholmes-uw with Copilot wants to merge 15 commits into

copilot/convert-manual-to-roxygen2

Commits on Mar 23, 2026

Commits on Mar 24, 2026

Add GitHub Actions workflow: R CMD check + PDF manual + HTML docs artifacts

Copilot
and
eeholmes-uw
committed
Remove GitHub Actions workflow; add HTML preview of CSEGriskfigure docs

Copilot
and
eeholmes-uw
committed
Add PDF preview of CSEGriskfigure documentation

Copilot
and
eeholmes-uw
committed
Batch 1: Convert CSEGtmufigure, MARSS, MARSSFisherI, MARSS_dfa, MARSS_marss, MARSS_marxss, MARSSaic, MARSSapplynames to Roxygen2

Copilot
and
Copilot
committed
Batch 2: Convert MARSSboot, MARSSharveyobsFI, MARSShatyt, MARSShessian, MARSShessian_numerical, MARSSinfo, MARSSinits, MARSSkem, MARSSkemcheck to Roxygen2

Copilot
and
Copilot
committed
Fix: mark MARSSharveyobsFI and MARSShessian.numerical as @keywords internal

Copilot
and
Copilot
committed
Add Roxygen2 documentation to MARSSinnovationsboot and stdInnov

Copilot
and
Copilot
committed
Add Roxygen2 documentation block for MARSSkf, MARSSkfas, MARSSkfss

Copilot
and
Copilot
committed
Add Roxygen2 documentation to MARSSoptim and MARSSparamCIs

Copilot
and
Copilot
committed
Batch 3: Convert MARSSinnovationsboot, stdInnov, MARSSkf, MARSSoptim, MARSSparamCIs, MARSSresiduals, MARSSresiduals.tT to Roxygen2

Copilot
and
Copilot
committed
Batch 3 (complete): Add MARSSresiduals_tt, MARSSresiduals_tt1 Roxygen2; delete converted Rd files
Copilot
committed
Batch 3 finish: Convert MARSSsimulate, MARSSvectorizeparam to Roxygen2

Copilot
and
Copilot
committed