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Convert CSEGriskfigure.Rd to roxygen2 header#8

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Convert CSEGriskfigure.Rd to roxygen2 header#8
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copilot/convert-csegriskfigure-to-roxygen

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Copilot AI commented Mar 26, 2026

Migrates CSEGriskfigure documentation from a hand-written .Rd file to a roxygen2 block as part of the broader roxygen2 migration effort.

Changes

  • R/CSEGriskfigure.R — Prepended complete roxygen2 block translated from the .Rd source:

    • All tags mapped: @name, @aliases, @description, @param (×8), @details, @return, @references, @author, @seealso, @examples, @keywords
    • .Rd markup converted to roxygen2 markdown: \code{\link{func}}[func()], \code{x}`x`
    • @export added (no \keyword{internal} in original)
    • Fixed pre-existing typo: "parametrc""parametric" in CI.method param description
  • man/CSEGriskfigure.Rd — Deleted; DESCRIPTION already has RoxygenNote: 7.3.1 and Roxygen: list(markdown = TRUE).


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Copilot AI changed the title [WIP] Convert CSEGriskfigure.Rd to Roxygen header Convert CSEGriskfigure.Rd to roxygen2 header Mar 26, 2026
Copilot AI requested a review from eeholmes-uw March 26, 2026 19:21
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@copilot markdown = TRUE so this part is going to run altogether into one line. Make sure each Panel appears on its own line.

#' @details
#' Panel 1: Time-series plot of the data.
#' Panel 2: CDF of extinction risk.
#' Panel 3: PDF of time to reach threshold.
#' Panel 4: Probability of reaching different thresholds during forecast period.
#' Panel 5: Sample projections.
#' Panel 6: TMU plot (uncertainty as a function of the forecast).

Agent-Logs-Url: https://github.com/eeholmes-uw/MARSS/sessions/ef8375af-cab6-4aac-9ef5-7da794a5c8d9

Co-authored-by: eeholmes-uw <66437309+eeholmes-uw@users.noreply.github.com>
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Copilot AI commented Mar 26, 2026

@copilot markdown = TRUE so this part is going to run altogether into one line. Make sure each Panel appears on its own line.

#' @details
...

Fixed in ff130d7 — converted the panel descriptions to a markdown bulleted list (* Panel N: ...) so each item renders on its own line with markdown = TRUE.

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