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Fix pyproject.toml parsing failure on Windows CRLF line endings#12

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eleanorjboyd with Copilot wants to merge 2 commits into
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copilot/fix-pyproject-toml-flow
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Fix pyproject.toml parsing failure on Windows CRLF line endings#12
eleanorjboyd with Copilot wants to merge 2 commits into
mainfrom
copilot/fix-pyproject-toml-flow

Fix pyproject.toml CRLF parsing failure and add comprehensive tests

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