Replace fairsharing collections with DOIs (#1856)

* Add info on youtube

* update fairsharing collections

* remove dissco as infrastructure in tools and resources

* Update pages/contribute/tool_resource_update.md

Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com>

---------

Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com>

Author: bedroesb

_data/tool_and_resource_list.yml

@@ -761,13 +761,12 @@
   name: ELIXIR Core Data Resources
   registry:
     fairsharing: 7cbcb7
-    fairsharing-coll: 3527
   url: https://elixir-europe.org/platforms/data/core-data-resources
 - description: List of discipline-specific deposition databases recommended by ELIXIR.
   id: elixir-deposition-databases-for-biomolecular-data
   name: ELIXIR Deposition Databases for Biomolecular Data
   registry:
-    fairsharing-coll: 3527
+    fairsharing: 7cbcb7
     tess: ELIXIR Deposition Databases for Biomolecular Data
   url: https://elixir-europe.org/platforms/data/elixir-deposition-databases
 - description: An authentication service from EOSC-Life
@@ -3282,14 +3281,6 @@
     fairsharing: 7g1bzj
     tess: WORMS
   url: https://www.marinespecies.org/index.php
-- description: Distributed System of Scientific Collections is a project that aims to enhance the accessibility and interoperability of scientific collection data, facilitating research and collaboration across various biodiversity collections and institutions.
-  id: dissco
-  name: DISSCO
-  registry:
-    biotools: dissco
-    fairsharing: NA
-    fairsharing-coll: 3816
-  url: https://www.dissco.eu/
 - description: Genome on a Tree (GoaT) is a powerful data aggregator and portal to explore and report underlying data for the eukaryotic tree of life. It indexes publicly available genomic metadata for all eukaryotic species and interpolates missing values through phylogenetic comparison.
   id: genomes-on-a-tree
   name: GoAT

pages/contribute/tool_resource_update.md

@@ -35,7 +35,7 @@ Each tool or resource mentioned in the text has metadata stored in the [main YAM
 - **name**: the name of the tool or resource
 - **url**: URL to the main page of the tool or resource, make sure to let the URL start with `https://`
 - **description**: A short description of the tool or resource. Try to not use the characters `"` or `'` 
-- **registry**: 3 registries are supported: [Bio.tools](https://bio.tools), [FAIRsharing.org](https://fairsharing.org/) and [TeSS](https://tess.elixir-europe.org/). The keywords you can use respectively are: `biotools`, `fairsharing`, `fairsharing-coll` and `tess`, specifying the id or query with a colon. For FAIRsharing, copy the alphanumeric characters after "FAIRsharing." in the DOI. FAIRsharing collections are not associated with a DOI but use a four-digit ID well-visible on the page. List registries under the `registry` attribute as `key: value pairs`. If no FAIRsharing ID, bio.tools ID or TeSS query is available for a source, you can overwrite the automatic linking by adding 'NA' as a registry.
+- **registry**: 3 registries are supported: [Bio.tools](https://bio.tools), [FAIRsharing.org](https://fairsharing.org/) and [TeSS](https://tess.elixir-europe.org/). The keywords you can use respectively are: `biotools`, `fairsharing` and `tess`, specifying the ID or query with a colon. For FAIRsharing records (including collections), copy the alphanumeric characters after "FAIRsharing." in the DOI. List registries under the `registry` attribute as `key: value pairs`. If no FAIRsharing DOIs, bio.tools ID or TeSS query is available for a source, you can overwrite the automatic linking by adding 'NA' as a registry.
 
 Example:
 

pages/your_domain/biodiversity.md

@@ -115,7 +115,7 @@ Collecting extensive (or "long-tail") metadata can greatly enhance data reuse an
 * If possible keep vouchers and your tissues and DNA samples in a biobank/collection with relevant metadata (see Biological resource management and compliance)  
 * The {% tool "ggbn" %} is a global network of curated collections of genomic samples, working together to make DNA and tissue collections discoverable for biodiversity research. {% tool "ggbn" %} is actively developing resources and recommendations for data management in relation to biobanking and specimen collections with their networks of repositories \- [GGBN data standard](https://wiki.ggbn.org/ggbn/GGBN_Data_Standard).   
 * The Consortium of European Taxonomic Facilities ({% tool "cetaf" %}), an European Network of biological and geological collections, generates specimen identifiers for specimens in CETAF collections.  
-* The European research infrastructure {% tool "dissco" %} (Distributed System of Scientific Collections) is working on developing a Digital Specimen Repository where DOIs will be provided for digital specimens.  
+* The European research infrastructure [DiSSCo](https://www.dissco.eu/) (Distributed System of Scientific Collections) is working on developing a Digital Specimen Repository where DOIs will be provided for digital specimens.  
 * In the sample metadata in {% tool "biosamples" %}, reference the specimen or tissue/DNA samples using persistent identifiers available or using the {% tool "dwc" %} standard (‘triplet’ that includes the institution and collection codes, and specimen catalogue number), see also recommendations in Agosti D. et al.{% cite agosti2022vt %}.  
 * In relation with collections of genetic resources that also encompass the intraspecific diversity, part of the recommendations are developed in the frame of FAO’s activities and completed through consortia of researchers supported by initiatives such as the Research Data Alliance.  
 * You can also find relevant information by consulting other domain pages related to Biodiversity:  

var/tools_validator.py

@@ -144,7 +144,7 @@ def remove_prefix(s, prefix):
 
 yaml_path = "_data/tool_and_resource_list.yml"
 rootdir = 'pages/'
-allowed_registries = ['biotools', 'fairsharing', 'tess', 'fairsharing-coll']
+allowed_registries = ['biotools', 'fairsharing', 'tess']
 my_represent_none = NullRepresenter()
 
 args = process_args()