fix workflow runs

[avallecam]

Summary

• fix runs after delayed merging Update 32 packages #229
• [actions] bot update: 32 packages updated in lockfile (R 4.6.0 target)
• Pinned renv/activate.R to renv 1.1.7 for R 4.5.x compatibility (R 4.6.0 breaks source compilation of cli, Rcpp, and others in the current lockfile)
• Updated mpox dataset download URL in learners/mpox_data_cleaning_pipeline.Rmd (3 occurrences)

Transversal

• suitable to translate to all repos with issues on lintr dependencies: f42ee37
• previously used: https://github.com/epiverse-trace/tutorials/blob/main/episodes/install.R

Test plan

• renv::restore() completed successfully with R 4.5.2
• renv::status() reports no issues
• sandpaper::build_lesson() ran successfully locally

🤖 Generated with Claude Code

[github-actions]

Thank you!

Thank you for your pull request 😃

🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

• 🎯 correct output
• 🖼️ correct figures
• ❓ new warnings
• ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/epiverse-trace/tutorials-early/compare/md-outputs..md-outputs-PR-231

The following changes were observed in the rendered markdown documents:

 ...g_pipeline-rendered-unnamed-chunk-2-1.png (new) | Bin 0 -> 10077 bytes
 install.R (new)                                    |  11 ++++++
 md5sum.txt                                         |  39 ++++++++++-----------
 read-cases.md                                      |  11 +++---
 4 files changed, 37 insertions(+), 24 deletions(-)

What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2026-06-10 09:34:20 +0000