diff --git a/episodes/install.R b/episodes/install.R
new file mode 100644
index 00000000..b889fdf9
--- /dev/null
+++ b/episodes/install.R
@@ -0,0 +1,11 @@
+pak::pak("knitr")
+pak::pak("xml2")
+pak::pak("lintr")
+library(knitr)
+opts_chunk$set(comment = "")
+library(xml2)
+x <- read_xml(" text ")
+x
+xml_name(x)
+library(lintr)
+available_tags(packages = "lintr")
diff --git a/learners/mpox_data_cleaning_pipeline.Rmd b/learners/mpox_data_cleaning_pipeline.Rmd
index 67642482..9f79903f 100644
--- a/learners/mpox_data_cleaning_pipeline.Rmd
+++ b/learners/mpox_data_cleaning_pipeline.Rmd
@@ -12,7 +12,7 @@ always_allow_html: true
In this document, we use the [{cleanepi}](https://epiverse-trace.github.io/cleanepi/)
package to clean and standardize a messy mpox (formerly known as Monkeypox)
dataset obtained from the [global.health](https://global.health/) platform.
-The dataset is in a `csv` format available on this [link](https://mpox-2024.s3.eu-central-1.amazonaws.com/latest.csv).
+The dataset is in a `csv` format available on this [link](https://ivcjkmyexc.execute-api.eu-central-1.amazonaws.com/web/url?folder=&file_name=latest.csv).
We begin by importing the data into R and then utilize {cleanepi}
functionalities to perform the following operations in a streamlined manner:
@@ -28,7 +28,7 @@ in the following pipeline:
```{r echo=TRUE, eval=FALSE}
cleaned_data <-
data.table::fread(
- "https://mpox-2024.s3.eu-central-1.amazonaws.com/latest.csv") |>
+ "https://ivcjkmyexc.execute-api.eu-central-1.amazonaws.com/web/url?folder=&file_name=latest.csv") |>
cleanepi::replace_missing_values(na_strings = "") |>
cleanepi::remove_constants() |>
cleanepi::standardize_dates(error_tolerance = 1) |>
@@ -82,10 +82,10 @@ We load the dataset using the `data.table::fread()` function and visualize it
with both `View()` and `wakefield::table_heat()` functions to understand the
distribution of missing values within the dataset.
-```{r echo=TRUE, cache=TRUE, eval=TRUE}
+```{r echo=TRUE, eval=TRUE}
# import the data
data_in <- data.table::fread(
- "https://mpox-2024.s3.eu-central-1.amazonaws.com/latest.csv"
+ "https://ivcjkmyexc.execute-api.eu-central-1.amazonaws.com/web/url?folder=&file_name=latest.csv"
)
# Visualise the distribution of the different types as well as missing data
diff --git a/renv.lock b/renv.lock
deleted file mode 100644
index 5f6548f9..00000000
--- a/renv.lock
+++ /dev/null
@@ -1,6130 +0,0 @@
-{
- "R": {
- "Version": "4.3.3",
- "Repositories": [
- {
- "Name": "CRAN",
- "URL": "https://cloud.r-project.org"
- }
- ]
- },
- "Packages": {
- "DBI": {
- "Package": "DBI",
- "Version": "1.2.3",
- "Source": "Repository",
- "Title": "R Database Interface",
- "Date": "2024-06-02",
- "Authors@R": "c( person(\"R Special Interest Group on Databases (R-SIG-DB)\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\") )",
- "Description": "A database interface definition for communication between R and relational database management systems. All classes in this package are virtual and need to be extended by the various R/DBMS implementations.",
- "License": "LGPL (>= 2.1)",
- "URL": "https://dbi.r-dbi.org, https://github.com/r-dbi/DBI",
- "BugReports": "https://github.com/r-dbi/DBI/issues",
- "Depends": [
- "methods",
- "R (>= 3.0.0)"
- ],
- "Suggests": [
- "arrow",
- "blob",
- "covr",
- "DBItest",
- "dbplyr",
- "downlit",
- "dplyr",
- "glue",
- "hms",
- "knitr",
- "magrittr",
- "nanoarrow (>= 0.3.0.1)",
- "RMariaDB",
- "rmarkdown",
- "rprojroot",
- "RSQLite (>= 1.1-2)",
- "testthat (>= 3.0.0)",
- "vctrs",
- "xml2"
- ],
- "VignetteBuilder": "knitr",
- "Config/autostyle/scope": "line_breaks",
- "Config/autostyle/strict": "false",
- "Config/Needs/check": "r-dbi/DBItest",
- "Encoding": "UTF-8",
- "RoxygenNote": "7.3.1",
- "Config/Needs/website": "r-dbi/DBItest, r-dbi/dbitemplate, adbi, AzureKusto, bigrquery, DatabaseConnector, dittodb, duckdb, implyr, lazysf, odbc, pool, RAthena, IMSMWU/RClickhouse, RH2, RJDBC, RMariaDB, RMySQL, RPostgres, RPostgreSQL, RPresto, RSQLite, sergeant, sparklyr, withr",
- "Config/testthat/edition": "3",
- "NeedsCompilation": "no",
- "Author": "R Special Interest Group on Databases (R-SIG-DB) [aut], Hadley Wickham [aut], Kirill Müller [aut, cre] (), R Consortium [fnd]",
- "Maintainer": "Kirill Müller ",
- "Repository": "CRAN"
- },
- "MASS": {
- "Package": "MASS",
- "Version": "7.3-60.0.1",
- "Source": "Repository",
- "Priority": "recommended",
- "Date": "2024-01-12",
- "Revision": "$Rev: 3621 $",
- "Depends": [
- "R (>= 4.0)",
- "grDevices",
- "graphics",
- "stats",
- "utils"
- ],
- "Imports": [
- "methods"
- ],
- "Suggests": [
- "lattice",
- "nlme",
- "nnet",
- "survival"
- ],
- "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"ripley@stats.ox.ac.uk\"), person(\"Bill\", \"Venables\", role = \"ctb\"), person(c(\"Douglas\", \"M.\"), \"Bates\", role = \"ctb\"), person(\"Kurt\", \"Hornik\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"Albrecht\", \"Gebhardt\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"David\", \"Firth\", role = \"ctb\"))",
- "Description": "Functions and datasets to support Venables and Ripley, \"Modern Applied Statistics with S\" (4th edition, 2002).",
- "Title": "Support Functions and Datasets for Venables and Ripley's MASS",
- "LazyData": "yes",
- "ByteCompile": "yes",
- "License": "GPL-2 | GPL-3",
- "URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
- "Contact": "",
- "NeedsCompilation": "yes",
- "Author": "Brian Ripley [aut, cre, cph], Bill Venables [ctb], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb]",
- "Maintainer": "Brian Ripley ",
- "Repository": "CRAN"
- },
- "Matrix": {
- "Package": "Matrix",
- "Version": "1.6-5",
- "Source": "Repository",
- "VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h",
- "Date": "2024-01-06",
- "Priority": "recommended",
- "Title": "Sparse and Dense Matrix Classes and Methods",
- "Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.",
- "License": "GPL (>= 2) | file LICENCE",
- "URL": "https://Matrix.R-forge.R-project.org",
- "BugReports": "https://R-forge.R-project.org/tracker/?atid=294&group_id=61",
- "Contact": "Matrix-authors@R-project.org",
- "Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Timothy A.\", \"Davis\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7614-6899\", \"SuiteSparse libraries, notably CHOLMOD and AMD\", \"collaborators listed in dir(pattern=\\\"^[A-Z]+[.]txt$\\\", full.names=TRUE, system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"))\")), person(\"Jens\", \"Oehlschlägel\", role = \"ctb\", comment = \"initial nearPD()\"), person(\"Jason\", \"Riedy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4345-4200\", \"GNU Octave's condest() and onenormest()\", \"Copyright: Regents of the University of California\")), person(\"R Core Team\", role = \"ctb\", comment = \"base R's matrix implementation\"))",
- "Depends": [
- "R (>= 3.5.0)",
- "methods"
- ],
- "Imports": [
- "grDevices",
- "graphics",
- "grid",
- "lattice",
- "stats",
- "utils"
- ],
- "Suggests": [
- "MASS",
- "datasets",
- "sfsmisc",
- "tools"
- ],
- "Enhances": [
- "SparseM",
- "graph"
- ],
- "LazyData": "no",
- "LazyDataNote": "not possible, since we use data/*.R and our S4 classes",
- "BuildResaveData": "no",
- "Encoding": "UTF-8",
- "NeedsCompilation": "yes",
- "Author": "Douglas Bates [aut] (), Martin Maechler [aut, cre] (), Mikael Jagan [aut] (), Timothy A. Davis [ctb] (, SuiteSparse libraries, notably CHOLMOD and AMD, collaborators listed in dir(pattern=\"^[A-Z]+[.]txt$\", full.names=TRUE, system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"))), Jens Oehlschlägel [ctb] (initial nearPD()), Jason Riedy [ctb] (, GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), R Core Team [ctb] (base R's matrix implementation)",
- "Maintainer": "Martin Maechler ",
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- },
- "R.methodsS3": {
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- "R (>= 2.13.0)"
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- "Imports": [
- "utils"
- ],
- "Suggests": [
- "codetools"
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- "Title": "S3 Methods Simplified",
- "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\"))",
- "Author": "Henrik Bengtsson [aut, cre, cph]",
- "Maintainer": "Henrik Bengtsson ",
- "Description": "Methods that simplify the setup of S3 generic functions and S3 methods. Major effort has been made in making definition of methods as simple as possible with a minimum of maintenance for package developers. For example, generic functions are created automatically, if missing, and naming conflict are automatically solved, if possible. The method setMethodS3() is a good start for those who in the future may want to migrate to S4. This is a cross-platform package implemented in pure R that generates standard S3 methods.",
- "License": "LGPL (>= 2.1)",
- "LazyLoad": "TRUE",
- "URL": "https://github.com/HenrikBengtsson/R.methodsS3",
- "BugReports": "https://github.com/HenrikBengtsson/R.methodsS3/issues",
- "NeedsCompilation": "no",
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- "Version": "1.27.1",
- "Source": "Repository",
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- "utils"
- ],
- "Suggests": [
- "tools"
- ],
- "Title": "R Object-Oriented Programming with or without References",
- "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\"))",
- "Author": "Henrik Bengtsson [aut, cre, cph]",
- "Maintainer": "Henrik Bengtsson ",
- "Description": "Methods and classes for object-oriented programming in R with or without references. Large effort has been made on making definition of methods as simple as possible with a minimum of maintenance for package developers. The package has been developed since 2001 and is now considered very stable. This is a cross-platform package implemented in pure R that defines standard S3 classes without any tricks.",
- "License": "LGPL (>= 2.1)",
- "LazyLoad": "TRUE",
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- "BugReports": "https://github.com/HenrikBengtsson/R.oo/issues",
- "NeedsCompilation": "no",
- "Repository": "CRAN"
- },
- "R.utils": {
- "Package": "R.utils",
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- "Source": "Repository",
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- "R.oo"
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- "Imports": [
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- "utils",
- "tools",
- "R.methodsS3"
- ],
- "Suggests": [
- "datasets",
- "digest (>= 0.6.10)"
- ],
- "Title": "Various Programming Utilities",
- "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\"))",
- "Author": "Henrik Bengtsson [aut, cre, cph]",
- "Maintainer": "Henrik Bengtsson ",
- "Description": "Utility functions useful when programming and developing R packages.",
- "License": "LGPL (>= 2.1)",
- "LazyLoad": "TRUE",
- "URL": "https://henrikbengtsson.github.io/R.utils/, https://github.com/HenrikBengtsson/R.utils",
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- "Version": "2.6.1",
- "Source": "Repository",
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- "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
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- "License": "MIT + file LICENSE",
- "URL": "https://r6.r-lib.org, https://github.com/r-lib/R6",
- "BugReports": "https://github.com/r-lib/R6/issues",
- "Depends": [
- "R (>= 3.6)"
- ],
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- "Config/Needs/website": "tidyverse/tidytemplate, ggplot2, microbenchmark, scales",
- "Config/testthat/edition": "3",
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- },
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- "Description": "Embeds the SQLite database engine in R and provides an interface compliant with the DBI package. The source for the SQLite engine (version 3.50.4) and for various extensions is included. System libraries will never be consulted because this package relies on static linking for the plugins it includes; this also ensures a consistent experience across all installations.",
- "License": "LGPL (>= 2.1)",
- "URL": "https://rsqlite.r-dbi.org, https://github.com/r-dbi/RSQLite",
- "BugReports": "https://github.com/r-dbi/RSQLite/issues",
- "Depends": [
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- ],
- "Imports": [
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- "blob (>= 1.2.0)",
- "DBI (>= 1.2.0)",
- "memoise",
- "methods",
- "pkgconfig",
- "rlang"
- ],
- "Suggests": [
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- "cli",
- "DBItest (>= 1.8.0)",
- "decor",
- "gert",
- "gh",
- "hms",
- "knitr",
- "magrittr",
- "rmarkdown",
- "rvest",
- "testthat (>= 3.0.0)",
- "withr",
- "xml2"
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- "LinkingTo": [
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- ],
- "VignetteBuilder": "knitr",
- "Config/Needs/website": "r-dbi/dbitemplate",
- "Config/autostyle/scope": "line_breaks",
- "Config/autostyle/strict": "false",
- "Config/testthat/edition": "3",
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- "NeedsCompilation": "yes",
- "Author": "Kirill Müller [aut, cre] (ORCID: ), Hadley Wickham [aut], David A. James [aut], Seth Falcon [aut], D. Richard Hipp [ctb] (for the included SQLite sources), Dan Kennedy [ctb] (for the included SQLite sources), Joe Mistachkin [ctb] (for the included SQLite sources), SQLite Authors [ctb] (for the included SQLite sources), Liam Healy [ctb] (for the included SQLite sources), R Consortium [fnd], RStudio [cph]",
- "Maintainer": "Kirill Müller ",
- "Repository": "CRAN"
- },
- "Rcpp": {
- "Package": "Rcpp",
- "Version": "1.1.0",
- "Source": "Repository",
- "Title": "Seamless R and C++ Integration",
- "Date": "2025-07-01",
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- "Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at , the paper by Eddelbuettel and Francois (2011, ), the book by Eddelbuettel (2013, ) and the paper by Eddelbuettel and Balamuta (2018, ); see 'citation(\"Rcpp\")' for details.",
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- "Date": "2024-08-23",
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- "Copyright": "See the file COPYRIGHTS for various Eigen copyright details",
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- "URL": "https://jeroen.r-universe.dev/V8",
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- "Author": "Tony Plate [aut, cre], Richard Heiberger [aut]",
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- "Type": "Package",
- "Title": "Convert Statistical Objects into Tidy Tibbles",
- "Authors@R": "c( person(\"David\", \"Robinson\", , \"admiral.david@gmail.com\", role = \"aut\"), person(\"Alex\", \"Hayes\", , \"alexpghayes@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-4985-5160\")), person(\"Simon\", \"Couch\", , \"simon.couch@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-5676-5107\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Indrajeet\", \"Patil\", , \"patilindrajeet.science@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(\"Derek\", \"Chiu\", , \"dchiu@bccrc.ca\", role = \"ctb\"), person(\"Matthieu\", \"Gomez\", , \"mattg@princeton.edu\", role = \"ctb\"), person(\"Boris\", \"Demeshev\", , \"boris.demeshev@gmail.com\", role = \"ctb\"), person(\"Dieter\", \"Menne\", , \"dieter.menne@menne-biomed.de\", role = \"ctb\"), person(\"Benjamin\", \"Nutter\", , \"nutter@battelle.org\", role = \"ctb\"), person(\"Luke\", \"Johnston\", , \"luke.johnston@mail.utoronto.ca\", role = \"ctb\"), person(\"Ben\", \"Bolker\", , \"bolker@mcmaster.ca\", role = \"ctb\"), person(\"Francois\", \"Briatte\", , \"f.briatte@gmail.com\", role = \"ctb\"), person(\"Jeffrey\", \"Arnold\", , \"jeffrey.arnold@gmail.com\", role = \"ctb\"), person(\"Jonah\", \"Gabry\", , \"jsg2201@columbia.edu\", role = \"ctb\"), person(\"Luciano\", \"Selzer\", , \"luciano.selzer@gmail.com\", role = \"ctb\"), person(\"Gavin\", \"Simpson\", , \"ucfagls@gmail.com\", role = \"ctb\"), person(\"Jens\", \"Preussner\", , \"jens.preussner@mpi-bn.mpg.de\", role = \"ctb\"), person(\"Jay\", \"Hesselberth\", , \"jay.hesselberth@gmail.com\", role = \"ctb\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"ctb\"), person(\"Matthew\", \"Lincoln\", , \"matthew.d.lincoln@gmail.com\", role = \"ctb\"), person(\"Alessandro\", \"Gasparini\", , \"ag475@leicester.ac.uk\", role = \"ctb\"), person(\"Lukasz\", \"Komsta\", , \"lukasz.komsta@umlub.pl\", role = \"ctb\"), person(\"Frederick\", \"Novometsky\", role = \"ctb\"), person(\"Wilson\", \"Freitas\", role = \"ctb\"), person(\"Michelle\", \"Evans\", role = \"ctb\"), person(\"Jason Cory\", \"Brunson\", , \"cornelioid@gmail.com\", role = \"ctb\"), person(\"Simon\", \"Jackson\", , \"drsimonjackson@gmail.com\", role = \"ctb\"), person(\"Ben\", \"Whalley\", , \"ben.whalley@plymouth.ac.uk\", role = \"ctb\"), person(\"Karissa\", \"Whiting\", , \"karissa.whiting@gmail.com\", role = \"ctb\"), person(\"Yves\", \"Rosseel\", , \"yrosseel@gmail.com\", role = \"ctb\"), person(\"Michael\", \"Kuehn\", , \"mkuehn10@gmail.com\", role = \"ctb\"), person(\"Jorge\", \"Cimentada\", , \"cimentadaj@gmail.com\", role = \"ctb\"), person(\"Erle\", \"Holgersen\", , \"erle.holgersen@gmail.com\", role = \"ctb\"), person(\"Karl\", \"Dunkle Werner\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0523-7309\")), person(\"Ethan\", \"Christensen\", , \"christensen.ej@gmail.com\", role = \"ctb\"), person(\"Steven\", \"Pav\", , \"shabbychef@gmail.com\", role = \"ctb\"), person(\"Paul\", \"PJ\", , \"pjpaul.stephens@gmail.com\", role = \"ctb\"), person(\"Ben\", \"Schneider\", , \"benjamin.julius.schneider@gmail.com\", role = \"ctb\"), person(\"Patrick\", \"Kennedy\", , \"pkqstr@protonmail.com\", role = \"ctb\"), person(\"Lily\", \"Medina\", , \"lilymiru@gmail.com\", role = \"ctb\"), person(\"Brian\", \"Fannin\", , \"captain@pirategrunt.com\", role = \"ctb\"), person(\"Jason\", \"Muhlenkamp\", , \"jason.muhlenkamp@gmail.com\", role = \"ctb\"), person(\"Matt\", \"Lehman\", role = \"ctb\"), person(\"Bill\", \"Denney\", , \"wdenney@humanpredictions.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5759-428X\")), person(\"Nic\", \"Crane\", role = \"ctb\"), person(\"Andrew\", \"Bates\", role = \"ctb\"), person(\"Vincent\", \"Arel-Bundock\", , \"vincent.arel-bundock@umontreal.ca\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2042-7063\")), person(\"Hideaki\", \"Hayashi\", role = \"ctb\"), person(\"Luis\", \"Tobalina\", role = \"ctb\"), person(\"Annie\", \"Wang\", , \"anniewang.uc@gmail.com\", role = \"ctb\"), person(\"Wei Yang\", \"Tham\", , \"weiyang.tham@gmail.com\", role = \"ctb\"), person(\"Clara\", \"Wang\", , \"clara.wang.94@gmail.com\", role = \"ctb\"), person(\"Abby\", \"Smith\", , \"als1@u.northwestern.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3207-0375\")), person(\"Jasper\", \"Cooper\", , \"jaspercooper@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8639-3188\")), person(\"E Auden\", \"Krauska\", , \"krauskae@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-1466-5850\")), person(\"Alex\", \"Wang\", , \"x249wang@uwaterloo.ca\", role = \"ctb\"), person(\"Malcolm\", \"Barrett\", , \"malcolmbarrett@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Charles\", \"Gray\", , \"charlestigray@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9978-011X\")), person(\"Jared\", \"Wilber\", role = \"ctb\"), person(\"Vilmantas\", \"Gegzna\", , \"GegznaV@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9500-5167\")), person(\"Eduard\", \"Szoecs\", , \"eduardszoecs@gmail.com\", role = \"ctb\"), person(\"Frederik\", \"Aust\", , \"frederik.aust@uni-koeln.de\", role = \"ctb\", comment = c(ORCID = \"0000-0003-4900-788X\")), person(\"Angus\", \"Moore\", , \"angusmoore9@gmail.com\", role = \"ctb\"), person(\"Nick\", \"Williams\", , \"ntwilliams.personal@gmail.com\", role = \"ctb\"), person(\"Marius\", \"Barth\", , \"marius.barth.uni.koeln@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-3421-6665\")), person(\"Bruna\", \"Wundervald\", , \"brunadaviesw@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8163-220X\")), person(\"Joyce\", \"Cahoon\", , \"joyceyu48@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7217-4702\")), person(\"Grant\", \"McDermott\", , \"grantmcd@uoregon.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7883-8573\")), person(\"Kevin\", \"Zarca\", , \"kevin.zarca@gmail.com\", role = \"ctb\"), person(\"Shiro\", \"Kuriwaki\", , \"shirokuriwaki@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5687-2647\")), person(\"Lukas\", \"Wallrich\", , \"lukas.wallrich@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2121-5177\")), person(\"James\", \"Martherus\", , \"james@martherus.com\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8285-3300\")), person(\"Chuliang\", \"Xiao\", , \"cxiao@umich.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8466-9398\")), person(\"Joseph\", \"Larmarange\", , \"joseph@larmarange.net\", role = \"ctb\"), person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", , \"michal2992@gmail.com\", role = \"ctb\"), person(\"Hakon\", \"Malmedal\", , \"hmalmedal@gmail.com\", role = \"ctb\"), person(\"Clara\", \"Wang\", role = \"ctb\"), person(\"Sergio\", \"Oller\", , \"sergioller@gmail.com\", role = \"ctb\"), person(\"Luke\", \"Sonnet\", , \"luke.sonnet@gmail.com\", role = \"ctb\"), person(\"Jim\", \"Hester\", , \"jim.hester@posit.co\", role = \"ctb\"), person(\"Ben\", \"Schneider\", , \"benjamin.julius.schneider@gmail.com\", role = \"ctb\"), person(\"Bernie\", \"Gray\", , \"bfgray3@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9190-6032\")), person(\"Mara\", \"Averick\", , \"mara@posit.co\", role = \"ctb\"), person(\"Aaron\", \"Jacobs\", , \"atheriel@gmail.com\", role = \"ctb\"), person(\"Andreas\", \"Bender\", , \"bender.at.R@gmail.com\", role = \"ctb\"), person(\"Sven\", \"Templer\", , \"sven.templer@gmail.com\", role = \"ctb\"), person(\"Paul-Christian\", \"Buerkner\", , \"paul.buerkner@gmail.com\", role = \"ctb\"), person(\"Matthew\", \"Kay\", , \"mjskay@umich.edu\", role = \"ctb\"), person(\"Erwan\", \"Le Pennec\", , \"lepennec@gmail.com\", role = \"ctb\"), person(\"Johan\", \"Junkka\", , \"johan.junkka@umu.se\", role = \"ctb\"), person(\"Hao\", \"Zhu\", , \"haozhu233@gmail.com\", role = \"ctb\"), person(\"Benjamin\", \"Soltoff\", , \"soltoffbc@uchicago.edu\", role = \"ctb\"), person(\"Zoe\", \"Wilkinson Saldana\", , \"zoewsaldana@gmail.com\", role = \"ctb\"), person(\"Tyler\", \"Littlefield\", , \"tylurp1@gmail.com\", role = \"ctb\"), person(\"Charles T.\", \"Gray\", , \"charlestigray@gmail.com\", role = \"ctb\"), person(\"Shabbh E.\", \"Banks\", role = \"ctb\"), person(\"Serina\", \"Robinson\", , \"robi0916@umn.edu\", role = \"ctb\"), person(\"Roger\", \"Bivand\", , \"Roger.Bivand@nhh.no\", role = \"ctb\"), person(\"Riinu\", \"Ots\", , \"riinuots@gmail.com\", role = \"ctb\"), person(\"Nicholas\", \"Williams\", , \"ntwilliams.personal@gmail.com\", role = \"ctb\"), person(\"Nina\", \"Jakobsen\", role = \"ctb\"), person(\"Michael\", \"Weylandt\", , \"michael.weylandt@gmail.com\", role = \"ctb\"), person(\"Lisa\", \"Lendway\", , \"llendway@macalester.edu\", role = \"ctb\"), person(\"Karl\", \"Hailperin\", , \"khailper@gmail.com\", role = \"ctb\"), person(\"Josue\", \"Rodriguez\", , \"jerrodriguez@ucdavis.edu\", role = \"ctb\"), person(\"Jenny\", \"Bryan\", , \"jenny@posit.co\", role = \"ctb\"), person(\"Chris\", \"Jarvis\", , \"Christopher1.jarvis@gmail.com\", role = \"ctb\"), person(\"Greg\", \"Macfarlane\", , \"gregmacfarlane@gmail.com\", role = \"ctb\"), person(\"Brian\", \"Mannakee\", , \"bmannakee@gmail.com\", role = \"ctb\"), person(\"Drew\", \"Tyre\", , \"atyre2@unl.edu\", role = \"ctb\"), person(\"Shreyas\", \"Singh\", , \"shreyas.singh.298@gmail.com\", role = \"ctb\"), person(\"Laurens\", \"Geffert\", , \"laurensgeffert@gmail.com\", role = \"ctb\"), person(\"Hong\", \"Ooi\", , \"hongooi@microsoft.com\", role = \"ctb\"), person(\"Henrik\", \"Bengtsson\", , \"henrikb@braju.com\", role = \"ctb\"), person(\"Eduard\", \"Szocs\", , \"eduardszoecs@gmail.com\", role = \"ctb\"), person(\"David\", \"Hugh-Jones\", , \"davidhughjones@gmail.com\", role = \"ctb\"), person(\"Matthieu\", \"Stigler\", , \"Matthieu.Stigler@gmail.com\", role = \"ctb\"), person(\"Hugo\", \"Tavares\", , \"hm533@cam.ac.uk\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9373-2726\")), person(\"R. Willem\", \"Vervoort\", , \"Willemvervoort@gmail.com\", role = \"ctb\"), person(\"Brenton M.\", \"Wiernik\", , \"brenton@wiernik.org\", role = \"ctb\"), person(\"Josh\", \"Yamamoto\", , \"joshuayamamoto5@gmail.com\", role = \"ctb\"), person(\"Jasme\", \"Lee\", role = \"ctb\"), person(\"Taren\", \"Sanders\", , \"taren.sanders@acu.edu.au\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4504-6008\")), person(\"Ilaria\", \"Prosdocimi\", , \"prosdocimi.ilaria@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8565-094X\")), person(\"Daniel D.\", \"Sjoberg\", , \"danield.sjoberg@gmail.com\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0862-2018\")), person(\"Alex\", \"Reinhart\", , \"areinhar@stat.cmu.edu\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6658-514X\")) )",
- "Description": "Summarizes key information about statistical objects in tidy tibbles. This makes it easy to report results, create plots and consistently work with large numbers of models at once. Broom provides three verbs that each provide different types of information about a model. tidy() summarizes information about model components such as coefficients of a regression. glance() reports information about an entire model, such as goodness of fit measures like AIC and BIC. augment() adds information about individual observations to a dataset, such as fitted values or influence measures.",
- "License": "MIT + file LICENSE",
- "URL": "https://broom.tidymodels.org/, https://github.com/tidymodels/broom",
- "BugReports": "https://github.com/tidymodels/broom/issues",
- "Depends": [
- "R (>= 4.1)"
- ],
- "Imports": [
- "backports",
- "cli",
- "dplyr (>= 1.0.0)",
- "generics (>= 0.0.2)",
- "glue",
- "lifecycle",
- "purrr",
- "rlang (>= 1.1.0)",
- "stringr",
- "tibble (>= 3.0.0)",
- "tidyr (>= 1.0.0)"
- ],
- "Suggests": [
- "AER",
- "AUC",
- "bbmle",
- "betareg (>= 3.2-1)",
- "biglm",
- "binGroup",
- "boot",
- "btergm (>= 1.10.6)",
- "car (>= 3.1-2)",
- "carData",
- "caret",
- "cluster",
- "cmprsk",
- "coda",
- "covr",
- "drc",
- "e1071",
- "emmeans",
- "epiR (>= 2.0.85)",
- "ergm (>= 3.10.4)",
- "fixest (>= 0.9.0)",
- "gam (>= 1.15)",
- "gee",
- "geepack",
- "ggplot2",
- "glmnet",
- "glmnetUtils",
- "gmm",
- "Hmisc",
- "interp",
- "irlba",
- "joineRML",
- "Kendall",
- "knitr",
- "ks",
- "Lahman",
- "lavaan (>= 0.6.18)",
- "leaps",
- "lfe",
- "lm.beta",
- "lme4",
- "lmodel2",
- "lmtest (>= 0.9.38)",
- "lsmeans",
- "maps",
- "margins",
- "MASS",
- "mclust",
- "mediation",
- "metafor",
- "mfx",
- "mgcv",
- "mlogit",
- "modeldata",
- "modeltests (>= 0.1.6)",
- "muhaz",
- "multcomp",
- "network",
- "nnet",
- "ordinal",
- "plm",
- "poLCA",
- "psych",
- "quantreg",
- "rmarkdown",
- "robust",
- "robustbase",
- "rsample",
- "sandwich",
- "spatialreg",
- "spdep (>= 1.1)",
- "speedglm",
- "spelling",
- "stats4",
- "survey",
- "survival (>= 3.6-4)",
- "systemfit",
- "testthat (>= 3.0.0)",
- "tseries",
- "vars",
- "zoo"
- ],
- "VignetteBuilder": "knitr",
- "Config/Needs/website": "tidyverse/tidytemplate",
- "Config/testthat/edition": "3",
- "Config/usethis/last-upkeep": "2025-04-25",
- "Encoding": "UTF-8",
- "Language": "en-US",
- "RoxygenNote": "7.3.3",
- "Collate": "'aaa-documentation-helper.R' 'null-and-default.R' 'aer.R' 'auc.R' 'base.R' 'bbmle.R' 'betareg.R' 'biglm.R' 'bingroup.R' 'boot.R' 'broom-package.R' 'broom.R' 'btergm.R' 'car.R' 'caret.R' 'cluster.R' 'cmprsk.R' 'data-frame.R' 'deprecated-0-7-0.R' 'drc.R' 'emmeans.R' 'epiR.R' 'ergm.R' 'fixest.R' 'gam.R' 'geepack.R' 'glmnet-cv-glmnet.R' 'glmnet-glmnet.R' 'gmm.R' 'hmisc.R' 'import-standalone-obj-type.R' 'import-standalone-types-check.R' 'joinerml.R' 'kendall.R' 'ks.R' 'lavaan.R' 'leaps.R' 'lfe.R' 'list-irlba.R' 'list-optim.R' 'list-svd.R' 'list-xyz.R' 'list.R' 'lm-beta.R' 'lmodel2.R' 'lmtest.R' 'maps.R' 'margins.R' 'mass-fitdistr.R' 'mass-negbin.R' 'mass-polr.R' 'mass-ridgelm.R' 'stats-lm.R' 'mass-rlm.R' 'mclust.R' 'mediation.R' 'metafor.R' 'mfx.R' 'mgcv.R' 'mlogit.R' 'muhaz.R' 'multcomp.R' 'nnet.R' 'nobs.R' 'ordinal-clm.R' 'ordinal-clmm.R' 'plm.R' 'polca.R' 'psych.R' 'stats-nls.R' 'quantreg-nlrq.R' 'quantreg-rq.R' 'quantreg-rqs.R' 'robust-glmrob.R' 'robust-lmrob.R' 'robustbase-glmrob.R' 'robustbase-lmrob.R' 'sp.R' 'spdep.R' 'speedglm-speedglm.R' 'speedglm-speedlm.R' 'stats-anova.R' 'stats-arima.R' 'stats-decompose.R' 'stats-factanal.R' 'stats-glm.R' 'stats-htest.R' 'stats-kmeans.R' 'stats-loess.R' 'stats-mlm.R' 'stats-prcomp.R' 'stats-smooth.spline.R' 'stats-summary-lm.R' 'stats-time-series.R' 'survey.R' 'survival-aareg.R' 'survival-cch.R' 'survival-coxph.R' 'survival-pyears.R' 'survival-survdiff.R' 'survival-survexp.R' 'survival-survfit.R' 'survival-survreg.R' 'systemfit.R' 'tseries.R' 'utilities.R' 'vars.R' 'zoo.R' 'zzz.R'",
- "NeedsCompilation": "no",
- "Author": "David Robinson [aut], Alex Hayes [aut] (ORCID: ), Simon Couch [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: ), Indrajeet Patil [ctb] (ORCID: ), Derek Chiu [ctb], Matthieu Gomez [ctb], Boris Demeshev [ctb], Dieter Menne [ctb], Benjamin Nutter [ctb], Luke Johnston [ctb], Ben Bolker [ctb], Francois Briatte [ctb], Jeffrey Arnold [ctb], Jonah Gabry [ctb], Luciano Selzer [ctb], Gavin Simpson [ctb], Jens Preussner [ctb], Jay Hesselberth [ctb], Hadley Wickham [ctb], Matthew Lincoln [ctb], Alessandro Gasparini [ctb], Lukasz Komsta [ctb], Frederick Novometsky [ctb], Wilson Freitas [ctb], Michelle Evans [ctb], Jason Cory Brunson [ctb], Simon Jackson [ctb], Ben Whalley [ctb], Karissa Whiting [ctb], Yves Rosseel [ctb], Michael Kuehn [ctb], Jorge Cimentada [ctb], Erle Holgersen [ctb], Karl Dunkle Werner [ctb] (ORCID: ), Ethan Christensen [ctb], Steven Pav [ctb], Paul PJ [ctb], Ben Schneider [ctb], Patrick Kennedy [ctb], Lily Medina [ctb], Brian Fannin [ctb], Jason Muhlenkamp [ctb], Matt Lehman [ctb], Bill Denney [ctb] (ORCID: ), Nic Crane [ctb], Andrew Bates [ctb], Vincent Arel-Bundock [ctb] (ORCID: ), Hideaki Hayashi [ctb], Luis Tobalina [ctb], Annie Wang [ctb], Wei Yang Tham [ctb], Clara Wang [ctb], Abby Smith [ctb] (ORCID: ), Jasper Cooper [ctb] (ORCID: ), E Auden Krauska [ctb] (ORCID: ), Alex Wang [ctb], Malcolm Barrett [ctb] (ORCID: ), Charles Gray [ctb] (ORCID: ), Jared Wilber [ctb], Vilmantas Gegzna [ctb] (ORCID: ), Eduard Szoecs [ctb], Frederik Aust [ctb] (ORCID: ), Angus Moore [ctb], Nick Williams [ctb], Marius Barth [ctb] (ORCID: ), Bruna Wundervald [ctb] (ORCID: ), Joyce Cahoon [ctb] (ORCID: ), Grant McDermott [ctb] (ORCID: ), Kevin Zarca [ctb], Shiro Kuriwaki [ctb] (ORCID: ), Lukas Wallrich [ctb] (ORCID: ), James Martherus [ctb] (ORCID: ), Chuliang Xiao [ctb] (ORCID: ), Joseph Larmarange [ctb], Max Kuhn [ctb], Michal Bojanowski [ctb], Hakon Malmedal [ctb], Clara Wang [ctb], Sergio Oller [ctb], Luke Sonnet [ctb], Jim Hester [ctb], Ben Schneider [ctb], Bernie Gray [ctb] (ORCID: ), Mara Averick [ctb], Aaron Jacobs [ctb], Andreas Bender [ctb], Sven Templer [ctb], Paul-Christian Buerkner [ctb], Matthew Kay [ctb], Erwan Le Pennec [ctb], Johan Junkka [ctb], Hao Zhu [ctb], Benjamin Soltoff [ctb], Zoe Wilkinson Saldana [ctb], Tyler Littlefield [ctb], Charles T. Gray [ctb], Shabbh E. Banks [ctb], Serina Robinson [ctb], Roger Bivand [ctb], Riinu Ots [ctb], Nicholas Williams [ctb], Nina Jakobsen [ctb], Michael Weylandt [ctb], Lisa Lendway [ctb], Karl Hailperin [ctb], Josue Rodriguez [ctb], Jenny Bryan [ctb], Chris Jarvis [ctb], Greg Macfarlane [ctb], Brian Mannakee [ctb], Drew Tyre [ctb], Shreyas Singh [ctb], Laurens Geffert [ctb], Hong Ooi [ctb], Henrik Bengtsson [ctb], Eduard Szocs [ctb], David Hugh-Jones [ctb], Matthieu Stigler [ctb], Hugo Tavares [ctb] (ORCID: ), R. Willem Vervoort [ctb], Brenton M. Wiernik [ctb], Josh Yamamoto [ctb], Jasme Lee [ctb], Taren Sanders [ctb] (ORCID: ), Ilaria Prosdocimi [ctb] (ORCID: ), Daniel D. Sjoberg [ctb] (ORCID: ), Alex Reinhart [ctb] (ORCID: )",
- "Maintainer": "Simon Couch ",
- "Repository": "CRAN"
- },
- "bslib": {
- "Package": "bslib",
- "Version": "0.9.0",
- "Source": "Repository",
- "Title": "Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'",
- "Authors@R": "c( person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Javi\", \"Aguilar\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap colorpicker library\"), person(\"Thomas\", \"Park\", role = c(\"ctb\", \"cph\"), comment = \"Bootswatch library\"), person(, \"PayPal\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap accessibility plugin\") )",
- "Description": "Simplifies custom 'CSS' styling of both 'shiny' and 'rmarkdown' via 'Bootstrap' 'Sass'. Supports 'Bootstrap' 3, 4 and 5 as well as their various 'Bootswatch' themes. An interactive widget is also provided for previewing themes in real time.",
- "License": "MIT + file LICENSE",
- "URL": "https://rstudio.github.io/bslib/, https://github.com/rstudio/bslib",
- "BugReports": "https://github.com/rstudio/bslib/issues",
- "Depends": [
- "R (>= 2.10)"
- ],
- "Imports": [
- "base64enc",
- "cachem",
- "fastmap (>= 1.1.1)",
- "grDevices",
- "htmltools (>= 0.5.8)",
- "jquerylib (>= 0.1.3)",
- "jsonlite",
- "lifecycle",
- "memoise (>= 2.0.1)",
- "mime",
- "rlang",
- "sass (>= 0.4.9)"
- ],
- "Suggests": [
- "bsicons",
- "curl",
- "fontawesome",
- "future",
- "ggplot2",
- "knitr",
- "magrittr",
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- "License": "MIT + file LICENSE",
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- "License": "MPL-2.0 | file LICENSE",
- "URL": "https://r-datatable.com, https://Rdatatable.gitlab.io/data.table, https://github.com/Rdatatable/data.table",
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- "Repository": "CRAN"
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- "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Maximilian\", \"Girlich\", role = \"aut\"), person(\"Edgar\", \"Ruiz\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
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- "License": "MIT + file LICENSE",
- "URL": "https://dbplyr.tidyverse.org/, https://github.com/tidyverse/dbplyr",
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- "Date": "2024-08-19",
- "Title": "Create Compact Hash Digests of R Objects",
- "Description": "Implementation of a function 'digest()' for the creation of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32', 'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128' algorithms) permitting easy comparison of R language objects, as well as functions such as'hmac()' to create hash-based message authentication code. Please note that this package is not meant to be deployed for cryptographic purposes for which more comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.",
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- "Author": "Dirk Eddelbuettel [aut, cre] (), Antoine Lucas [ctb], Jarek Tuszynski [ctb], Henrik Bengtsson [ctb] (), Simon Urbanek [ctb] (), Mario Frasca [ctb], Bryan Lewis [ctb], Murray Stokely [ctb], Hannes Muehleisen [ctb], Duncan Murdoch [ctb], Jim Hester [ctb], Wush Wu [ctb] (), Qiang Kou [ctb] (), Thierry Onkelinx [ctb] (), Michel Lang [ctb] (), Viliam Simko [ctb], Kurt Hornik [ctb] (), Radford Neal [ctb] (), Kendon Bell [ctb] (), Matthew de Queljoe [ctb], Dmitry Selivanov [ctb], Ion Suruceanu [ctb], Bill Denney [ctb], Dirk Schumacher [ctb], András Svraka [ctb], Sergey Fedorov [ctb], Will Landau [ctb] (), Floris Vanderhaeghe [ctb] (), Kevin Tappe [ctb], Harris McGehee [ctb], Tim Mastny [ctb], Aaron Peikert [ctb] (), Mark van der Loo [ctb] (), Chris Muir [ctb] (), Moritz Beller [ctb] (), Sebastian Campbell [ctb], Winston Chang [ctb] (), Dean Attali [ctb] (), Michael Chirico [ctb] (), Kevin Ushey [ctb]",
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- "Repository": "CRAN"
- },
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- "Title": "Discrete Distribution Approximations",
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- "Description": "Creates discretised versions of continuous distribution functions by mapping continuous values to an underlying discrete grid, based on a (uniform) frequency of discretisation, a valid discretisation point, and an integration range. For a review of discretisation methods, see Chakraborty (2015) .",
- "License": "MIT + file LICENSE",
- "LazyData": "true",
- "URL": "https://github.com/reconhub/distcrete",
- "BugReports": "https://github.com/reconhub/distcrete/issues",
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- "Description": "Vectorised distribution objects with tools for manipulating, visualising, and using probability distributions. Designed to allow model prediction outputs to return distributions rather than their parameters, allowing users to directly interact with predictive distributions in a data-oriented workflow. In addition to providing generic replacements for p/d/q/r functions, other useful statistics can be computed including means, variances, intervals, and highest density regions.",
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- "Date": "2021-08-21",
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- "Maintainer": "Bill Venables ",
- "Description": "Allow numbers to be presented in an English language version, one, two, three, ... Ordinals are also available, first, second, third, ... and indefinite article choice, \"a\" or \"an\".",
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- "Title": "Classes and Helper Functions for Working with Epidemiological Parameters",
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- "Description": "Classes and helper functions for loading, extracting, converting, manipulating, plotting and aggregating epidemiological parameters for infectious diseases. Epidemiological parameters extracted from the literature are loaded from the 'epiparameterDB' R package.",
- "License": "MIT + file LICENSE",
- "URL": "https://github.com/epiverse-trace/epiparameter/, https://epiverse-trace.github.io/epiparameter/",
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- "Version": "0.1.0",
- "Source": "Repository",
- "Title": "Database of Epidemiological Parameters",
- "Authors@R": "c( person(\"Joshua W.\", \"Lambert\", , \"joshua.lambert@lshtm.ac.uk\", role = c(\"cre\", \"aut\", \"cph\"), comment = c(ORCID = \"0000-0001-5218-3046\")), person(\"Adam\", \"Kucharski\", , \"adam.kucharski@lshtm.ac.uk\", role = \"aut\", comment = c(ORCID = \"0000-0001-8814-9421\")), person(\"Carmen\", \"Tamayo\", , \"carmen.tamayo-cuartero@lshtm.ac.uk\", role = \"aut\", comment = c(ORCID = \"0000-0003-4184-2864\")) )",
- "Description": "A data package containing a database of epidemiological parameters. It stores the data for the 'epiparameter' R package. Epidemiological parameter estimates are extracted from the literature.",
- "License": "CC0",
- "URL": "https://github.com/epiverse-trace/epiparameterDB/",
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- "Title": "Parsing and Evaluation Tools that Provide More Details than the Default",
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- "License": "MIT + file LICENSE",
- "URL": "https://evaluate.r-lib.org/, https://github.com/r-lib/evaluate",
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- "Source": "Repository",
- "Title": "Tools for Working with URLs and HTTP",
- "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
- "Description": "Useful tools for working with HTTP organised by HTTP verbs (GET(), POST(), etc). Configuration functions make it easy to control additional request components (authenticate(), add_headers() and so on).",
- "License": "MIT + file LICENSE",
- "URL": "https://httr.r-lib.org/, https://github.com/r-lib/httr",
- "BugReports": "https://github.com/r-lib/httr/issues",
- "Depends": [
- "R (>= 3.5)"
- ],
- "Imports": [
- "curl (>= 5.0.2)",
- "jsonlite",
- "mime",
- "openssl (>= 0.8)",
- "R6"
- ],
- "Suggests": [
- "covr",
- "httpuv",
- "jpeg",
- "knitr",
- "png",
- "readr",
- "rmarkdown",
- "testthat (>= 0.8.0)",
- "xml2"
- ],
- "VignetteBuilder": "knitr",
- "Config/Needs/website": "tidyverse/tidytemplate",
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- "RoxygenNote": "7.2.3",
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- "Author": "Hadley Wickham [aut, cre], Posit, PBC [cph, fnd]",
- "Maintainer": "Hadley Wickham ",
- "Repository": "CRAN"
- },
- "httr2": {
- "Package": "httr2",
- "Version": "1.2.1",
- "Source": "Repository",
- "Title": "Perform HTTP Requests and Process the Responses",
- "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Maximilian\", \"Girlich\", role = \"ctb\") )",
- "Description": "Tools for creating and modifying HTTP requests, then performing them and processing the results. 'httr2' is a modern re-imagining of 'httr' that uses a pipe-based interface and solves more of the problems that API wrapping packages face.",
- "License": "MIT + file LICENSE",
- "URL": "https://httr2.r-lib.org, https://github.com/r-lib/httr2",
- "BugReports": "https://github.com/r-lib/httr2/issues",
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- "R (>= 4.1)"
- ],
- "Imports": [
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- "curl (>= 6.4.0)",
- "glue",
- "lifecycle",
- "magrittr",
- "openssl",
- "R6",
- "rappdirs",
- "rlang (>= 1.1.0)",
- "vctrs (>= 0.6.3)",
- "withr"
- ],
- "Suggests": [
- "askpass",
- "bench",
- "clipr",
- "covr",
- "docopt",
- "httpuv",
- "jose",
- "jsonlite",
- "knitr",
- "later (>= 1.4.0)",
- "nanonext",
- "paws.common",
- "promises",
- "rmarkdown",
- "testthat (>= 3.1.8)",
- "tibble",
- "webfakes (>= 1.4.0)",
- "xml2"
- ],
- "VignetteBuilder": "knitr",
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- "Config/testthat/parallel": "true",
- "Config/testthat/start-first": "resp-stream, req-perform",
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- "NeedsCompilation": "no",
- "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd], Maximilian Girlich [ctb]",
- "Maintainer": "Hadley Wickham ",
- "Repository": "CRAN"
- },
- "ids": {
- "Package": "ids",
- "Version": "1.0.1",
- "Source": "Repository",
- "Title": "Generate Random Identifiers",
- "Authors@R": "person(\"Rich\", \"FitzJohn\", role = c(\"aut\", \"cre\"), email = \"rich.fitzjohn@gmail.com\")",
- "Description": "Generate random or human readable and pronounceable identifiers.",
- "License": "MIT + file LICENSE",
- "URL": "https://github.com/richfitz/ids",
- "BugReports": "https://github.com/richfitz/ids/issues",
- "Imports": [
- "openssl",
- "uuid"
- ],
- "Suggests": [
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- "rcorpora",
- "rmarkdown",
- "testthat"
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- "RoxygenNote": "6.0.1",
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- "Author": "Rich FitzJohn [aut, cre]",
- "Maintainer": "Rich FitzJohn ",
- "Repository": "CRAN"
- },
- "incidence2": {
- "Package": "incidence2",
- "Version": "2.6.3",
- "Source": "Repository",
- "Type": "Package",
- "Title": "Compute, Handle and Plot Incidence of Dated Events",
- "Authors@R": "c( person(\"Tim\", \"Taylor\", role = c(\"aut\", \"cre\"), email = \"tim.taylor@hiddenelephants.co.uk\", comment = c(ORCID = \"0000-0002-8587-7113\")), person(\"Thibaut\", \"Jombart\", role = \"ctb\", email = \"thibautjombart@gmail.com\") )",
- "Description": "Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence2' is used to store computed incidence and can be easily manipulated, subsetted, and plotted.",
- "Encoding": "UTF-8",
- "License": "MIT + file LICENSE",
- "URL": "https://www.reconverse.org/incidence2/, https://github.com/reconverse/incidence2",
- "BugReports": "https://github.com/reconverse/incidence2/issues",
- "Depends": [
- "grates (>= 1.3.0)",
- "R (>= 4.1.0)"
- ],
- "Imports": [
- "grDevices",
- "data.table (>= 1.15.0)",
- "pillar",
- "utils",
- "stats",
- "tibble",
- "tidyr",
- "dplyr (>= 1.1.0)",
- "tidyselect",
- "rlang",
- "vctrs",
- "ympes (>= 1.3.0)"
- ],
- "RoxygenNote": "7.3.2",
- "Suggests": [
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- "ggplot2",
- "scales",
- "litedown",
- "testthat (>= 3.0.0)",
- "ciTools",
- "withr"
- ],
- "VignetteBuilder": "litedown",
- "Config/testthat/load-all": "list(export_all = FALSE, helpers = FALSE)",
- "Config/testthat/edition": "3",
- "Config/testthat/parallel": "true",
- "Config/testthat/start-first": "plot, incidence, bootstrap",
- "LazyData": "true",
- "NeedsCompilation": "no",
- "Author": "Tim Taylor [aut, cre] (ORCID: ), Thibaut Jombart [ctb]",
- "Maintainer": "Tim Taylor ",
- "Repository": "CRAN"
- },
- "isoband": {
- "Package": "isoband",
- "Version": "0.3.0",
- "Source": "Repository",
- "Title": "Generate Isolines and Isobands from Regularly Spaced Elevation Grids",
- "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Claus O.\", \"Wilke\", , \"wilke@austin.utexas.edu\", role = \"aut\", comment = c(\"Original author\", ORCID = \"0000-0002-7470-9261\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
- "Description": "A fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data.",
- "License": "MIT + file LICENSE",
- "URL": "https://isoband.r-lib.org, https://github.com/r-lib/isoband",
- "BugReports": "https://github.com/r-lib/isoband/issues",
- "Imports": [
- "cli",
- "grid",
- "rlang",
- "utils"
- ],
- "Suggests": [
- "covr",
- "ggplot2",
- "knitr",
- "magick",
- "bench",
- "rmarkdown",
- "sf",
- "testthat (>= 3.0.0)",
- "xml2"
- ],
- "VignetteBuilder": "knitr",
- "Config/Needs/website": "tidyverse/tidytemplate",
- "Config/testthat/edition": "3",
- "Config/usethis/last-upkeep": "2025-12-05",
- "Encoding": "UTF-8",
- "RoxygenNote": "7.3.3",
- "Config/build/compilation-database": "true",
- "LinkingTo": [
- "cpp11"
- ],
- "NeedsCompilation": "yes",
- "Author": "Hadley Wickham [aut] (ORCID: ), Claus O. Wilke [aut] (Original author, ORCID: ), Thomas Lin Pedersen [aut, cre] (ORCID: