[pre-commit.ci] pre-commit autoupdate (#646)

* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v5.0.0](pre-commit/pre-commit-hooks@v4.5.0...v5.0.0)
- [github.com/astral-sh/ruff-pre-commit: v0.1.4 → v0.11.4](astral-sh/ruff-pre-commit@v0.1.4...v0.11.4)
- [github.com/pre-commit/mirrors-mypy: v1.6.1 → v1.15.0](pre-commit/mirrors-mypy@v1.6.1...v1.15.0)
- [github.com/codespell-project/codespell: v2.2.6 → v2.4.1](codespell-project/codespell@v2.2.6...v2.4.1)

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* TST: update expected outputs

* MAINT: adding ruff ignores for the test notebooks

* MAINT: fix myst lint error

* Do not auto-format include generated notebooks

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Brigitta Sipőcz <bsipocz@gmail.com>

Author: pre-commit-ci[bot]

.pre-commit-config.yaml

@@ -15,7 +15,7 @@ ci:
 repos:
 
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v5.0.0
     hooks:
     - id: check-json
     - id: check-yaml
@@ -28,14 +28,14 @@ repos:
     - id: trailing-whitespace
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.1.4
+    rev: v0.11.4
     hooks:
     - id: ruff
       args: ["--fix", "--show-fixes"]
     - id: ruff-format
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.6.1
+    rev: v1.15.0
     hooks:
     - id: mypy
       args: [--config-file=pyproject.toml]
@@ -51,7 +51,7 @@ repos:
         )$
 
   - repo: https://github.com/codespell-project/codespell
-    rev: v2.2.6
+    rev: v2.4.1
     hooks:
     - id: codespell
       args: ["-S", "*.ipynb"]

docs/render/orphaned_nb.ipynb

@@ -33,8 +33,9 @@
    ],
    "source": [
     "from myst_nb import glue\n",
+    "\n",
     "glue(\"var_text\", \"My orphaned variable!\")\n",
-    "glue(\"var_float\", 1.0/3.0)"
+    "glue(\"var_float\", 1.0 / 3.0)"
    ]
   }
  ],

myst_nb/__init__.py

@@ -1,4 +1,5 @@
 """A docutils/sphinx parser for Jupyter Notebooks."""
+
 __version__ = "1.2.0"
 
 

myst_nb/cli.py

@@ -1,4 +1,5 @@
 """A basic CLI for quickstart of a myst_nb project."""
+
 from __future__ import annotations
 
 import argparse
@@ -81,7 +82,7 @@ def generate_conf_py() -> str:
         if field.metadata.get("sphinx_exclude"):
             continue
         if field.metadata.get("help"):
-            settings += f'{field.metadata.get("help")}\n'
+            settings += f"{field.metadata.get('help')}\n"
         settings += f"nb_{name} = {value!r}\n\n"
     content += "\n" + indent(settings, "# ").rstrip() + "\n"
 

myst_nb/core/config.py

@@ -1,4 +1,5 @@
 """Configuration for myst-nb."""
+
 import dataclasses as dc
 from enum import Enum
 from typing import Any, Callable, Dict, Iterable, Literal, Optional, Sequence, Tuple

myst_nb/core/execute/base.py

@@ -1,4 +1,5 @@
 """Module for executing notebooks."""
+
 from __future__ import annotations
 
 from pathlib import Path

myst_nb/core/execute/cache.py

@@ -1,4 +1,5 @@
 """Execute a notebook from the cache."""
+
 from __future__ import annotations
 
 from contextlib import nullcontext, suppress
@@ -58,7 +59,7 @@ def start_client(self):
         # TODO do in try/except, in case of db write errors
         NbProjectRecord.remove_tracebacks([stage_record.pk], cache.db)
         cwd_context: ContextManager[str] = (
-            TemporaryDirectory()  # type: ignore
+            TemporaryDirectory()
             if self.nb_config.execution_in_temp
             else nullcontext(str(self.path.parent))
         )

myst_nb/core/execute/direct.py

@@ -1,4 +1,5 @@
 """Execute a notebook directly."""
+
 from __future__ import annotations
 
 from contextlib import nullcontext

myst_nb/core/execute/inline.py

@@ -1,4 +1,5 @@
 """Execute a notebook inline."""
+
 from __future__ import annotations
 
 import asyncio

myst_nb/core/lexers.py

@@ -1,4 +1,5 @@
 """Pygments lexers"""
+
 from __future__ import annotations
 
 import re