std_analysis_on_reconstructed_data.xml

<container>

    <properties url="classpath:/default/settings.properties" />

    <property name="infile" value="file:src/main/resources/testDataFile.fits.gz" />
    <property name="drsfile" value="file:src/main/resources/testDrsFile.drs.fits.gz" />

    <property name="integralGainFile" value="classpath:/default/gain_sorted_20131127.csv" />
    <property name="pixelDelayFile" value="classpath:/default/delays_lightpulser_20150217.csv" />

    <property name="output" value="file:testoutfile.json" />

    <property name="auxFolder" value="file:src/main/resources/aux/" />
    <service id="gainService" class="fact.calibrationservice.SinglePulseGainCalibService" integralGainFile="${integralGainFile}" />
    <service id="auxService" class="fact.auxservice.AuxFileService" auxFolder="${auxFolder}" />

    <service id="calibService" class="fact.calibrationservice.ConstantCalibService" />

    <!--In case you want to analyze .zfits files.-->
    <!-- <stream id="fact" class="fact.io.zfits.ZFitsStream"  url="${infile}"/> -->

    <stream id="fact" class="fact.io.FITSStream" url="${infile}"/>

    <process id="2" input="fact">
        <!-- prevEventAndSkip: -->
        <!-- PreviousEventInfo, Skip(no Data Trigger) -->
        <include url="classpath:/default/data/prevEventAndSkip.xml" />
        <!-- Output: Data -->

        <!-- Calibration: -->
        <!-- DrsCalibration, PatchJumpRemoval, RemoveSpikes,
        DrsTimeCalibration, ArrayTimeCorrection, InterpolateBadPixel -->
        <include url="classpath:/default/data/calibration.xml" />
        <!-- Output: DataCalibrated -->

        <!-- Single Pe Extraction -->
        <fact.photonstream.SinglePulseExtraction
                dataKey="DataCalibrated"
                outputKey="PhotonArrivals"
        />

        <!-- Data Time Series Reconstruction from Single Pe Data -->
        <fact.photonstream.ConvertSinglePulses2Timeseries
                singlePulsesKey="PhotonArrivals"
                baseLineKey="PhotonArrivalsBaseLine"
                timeSeriesKey="DataCalibrated"
        />


        <!-- Extraction -->
        <!-- BasicExtraction, RisingEdgeForPositions, RisingEdgePolynomFit, TimeOverThreshold,
        PhotonChargeTimeOverThreshold, HandleSaturation, CorrectPixelDelays-->
        <include url="classpath:/default/data/extraction.xml" />
        <!-- Output: photoncharge, arrivalTime -->

        <!-- Cleaning -->
        <!-- SourcePosition(Cetatauri), CoreNeighborCleanTimeNeighbor-->
        <include url="classpath:/default/data/cleaning.xml" />
        <!-- Output: shower -->

        <!-- Parameter calculation (only source independent) -->
        <!-- ArrayMean(photoncharge,arrivalTime), ArrayStatistics(photoncharge,arrivalTime,maxSlopes,
        arrivalTimePos,maxSlopesPos,maxAmplitudePosition,photonchargeSaturated,arrivalTimeTOT),
        Size, DistributionFromShower, M3Long, Length, Width, NumberOfIslands, TimeGraident,
        Concentration, ConcentrationCore, ConcentrationAtCenterOfGravity, Leakage, TimeSpread,
        ShowerSlope, Disp -->
        <include url="classpath:/default/data/parameterCalc.xml" />
        <!-- Output: source independent parameters -->

        <!-- Parameter calculation (only source dependent) -->
        <!-- SourcePosition(${sourcename}), AntiSourcePosition(5), Alpha(for 6 Sources),
        Distance(for 6 Sources), CosDeltaAlpha(for 6 Sources), Theta(for 6 Sources) -->
        <include url="classpath:/default/data/sourceParameter.xml" />
        <!-- Output: source dependent parameters -->

        <!--<fact.ShowViewer key="DataCalibrated" />-->

        <!--<fact.io.JSONWriter keys="${keysForOutput}"-->
                            <!--url="${output}"-->
                            <!--writeListOfItems="True"-->
                            <!--pixelSetsAsInt="True"-->
        <!--/>-->
    </process>
</container>