|
2 | 2 | "cells": [ |
3 | 3 | { |
4 | 4 | "cell_type": "code", |
5 | | - "execution_count": 12, |
6 | | - "id": "chemical-contest", |
| 5 | + "execution_count": null, |
| 6 | + "id": "laughing-collectible", |
7 | 7 | "metadata": {}, |
8 | 8 | "outputs": [], |
9 | 9 | "source": [ |
10 | | - "from fairworkflows import FairWorkflow, FairStep, FairVariable\n", |
| 10 | + "from fairworkflows import FairWorkflow, FairStep, FairVariable, is_fairworkflow\n", |
11 | 11 | "import inspect\n", |
12 | 12 | "import typing\n", |
13 | 13 | "from typing import Callable, get_type_hints, List, Union\n", |
|
146 | 146 | }, |
147 | 147 | { |
148 | 148 | "cell_type": "markdown", |
149 | | - "id": "accompanied-filter", |
| 149 | + "id": "excellent-prompt", |
150 | 150 | "metadata": {}, |
151 | 151 | "source": [ |
152 | 152 | "<br/>\n", |
|
189 | 189 | }, |
190 | 190 | { |
191 | 191 | "cell_type": "markdown", |
192 | | - "id": "traditional-reference", |
| 192 | + "id": "corporate-reward", |
193 | 193 | "metadata": {}, |
194 | 194 | "source": [ |
195 | 195 | "# FairWorkflows execution demo" |
196 | 196 | ] |
197 | 197 | }, |
198 | 198 | { |
199 | 199 | "cell_type": "markdown", |
200 | | - "id": "insured-desperate", |
| 200 | + "id": "worst-enzyme", |
201 | 201 | "metadata": {}, |
202 | 202 | "source": [ |
203 | 203 | "## Define the steps of your workflow\n", |
|
206 | 206 | }, |
207 | 207 | { |
208 | 208 | "cell_type": "code", |
209 | | - "execution_count": 13, |
210 | | - "id": "precise-contractor", |
| 209 | + "execution_count": null, |
| 210 | + "id": "charged-merit", |
211 | 211 | "metadata": {}, |
212 | 212 | "outputs": [], |
213 | 213 | "source": [ |
|
219 | 219 | }, |
220 | 220 | { |
221 | 221 | "cell_type": "code", |
222 | | - "execution_count": 14, |
223 | | - "id": "suffering-career", |
| 222 | + "execution_count": null, |
| 223 | + "id": "special-clinic", |
224 | 224 | "metadata": {}, |
225 | 225 | "outputs": [], |
226 | 226 | "source": [ |
|
232 | 232 | }, |
233 | 233 | { |
234 | 234 | "cell_type": "code", |
235 | | - "execution_count": 15, |
236 | | - "id": "parliamentary-minority", |
| 235 | + "execution_count": null, |
| 236 | + "id": "banner-belly", |
237 | 237 | "metadata": {}, |
238 | 238 | "outputs": [], |
239 | 239 | "source": [ |
|
245 | 245 | }, |
246 | 246 | { |
247 | 247 | "cell_type": "code", |
248 | | - "execution_count": 16, |
249 | | - "id": "fleet-gambling", |
| 248 | + "execution_count": null, |
| 249 | + "id": "italic-alaska", |
250 | 250 | "metadata": {}, |
251 | 251 | "outputs": [], |
252 | 252 | "source": [ |
|
259 | 259 | }, |
260 | 260 | { |
261 | 261 | "cell_type": "markdown", |
262 | | - "id": "double-journalism", |
| 262 | + "id": "defined-scientist", |
263 | 263 | "metadata": {}, |
264 | 264 | "source": [ |
265 | 265 | "## Define your workflow using @fairworkflow\n", |
|
268 | 268 | }, |
269 | 269 | { |
270 | 270 | "cell_type": "code", |
271 | | - "execution_count": 17, |
272 | | - "id": "racial-diana", |
| 271 | + "execution_count": null, |
| 272 | + "id": "skilled-macintosh", |
273 | 273 | "metadata": {}, |
274 | 274 | "outputs": [], |
275 | 275 | "source": [ |
|
286 | 286 | }, |
287 | 287 | { |
288 | 288 | "cell_type": "markdown", |
289 | | - "id": "alpine-ability", |
| 289 | + "id": "frozen-lightning", |
290 | 290 | "metadata": {}, |
291 | 291 | "source": [ |
292 | 292 | "## Create an instance of your workflow and display it" |
|
295 | 295 | { |
296 | 296 | "cell_type": "code", |
297 | 297 | "execution_count": 18, |
298 | | - "id": "civilian-lyric", |
| 298 | + "id": "egyptian-minister", |
299 | 299 | "metadata": {}, |
300 | 300 | "outputs": [], |
301 | 301 | "source": [ |
|
305 | 305 | { |
306 | 306 | "cell_type": "code", |
307 | 307 | "execution_count": 19, |
308 | | - "id": "shared-bidder", |
| 308 | + "id": "above-railway", |
309 | 309 | "metadata": {}, |
310 | 310 | "outputs": [ |
311 | 311 | { |
|
329 | 329 | }, |
330 | 330 | { |
331 | 331 | "cell_type": "markdown", |
332 | | - "id": "suspected-renaissance", |
| 332 | + "id": "about-coalition", |
333 | 333 | "metadata": {}, |
334 | 334 | "source": [ |
335 | 335 | "## Execute your workflow using .execute()\n", |
|
339 | 339 | { |
340 | 340 | "cell_type": "code", |
341 | 341 | "execution_count": 23, |
342 | | - "id": "solid-rings", |
| 342 | + "id": "chinese-drill", |
343 | 343 | "metadata": {}, |
344 | 344 | "outputs": [ |
345 | 345 | { |
|
360 | 360 | }, |
361 | 361 | { |
362 | 362 | "cell_type": "markdown", |
363 | | - "id": "moderate-fault", |
| 363 | + "id": "freelance-dallas", |
364 | 364 | "metadata": {}, |
365 | 365 | "source": [ |
366 | 366 | "## Get retrospective provenance of run\n", |
|
370 | 370 | { |
371 | 371 | "cell_type": "code", |
372 | 372 | "execution_count": 21, |
373 | | - "id": "powered-world", |
| 373 | + "id": "premier-darkness", |
374 | 374 | "metadata": {}, |
375 | 375 | "outputs": [ |
376 | 376 | { |
|
397 | 397 | }, |
398 | 398 | { |
399 | 399 | "cell_type": "markdown", |
400 | | - "id": "applied-practice", |
| 400 | + "id": "economic-accordance", |
401 | 401 | "metadata": {}, |
402 | 402 | "source": [ |
403 | 403 | "## Get Plex RDF of workflow" |
|
406 | 406 | { |
407 | 407 | "cell_type": "code", |
408 | 408 | "execution_count": 22, |
409 | | - "id": "adequate-logging", |
| 409 | + "id": "sitting-lexington", |
410 | 410 | "metadata": {}, |
411 | 411 | "outputs": [ |
412 | 412 | { |
|
528 | 528 | }, |
529 | 529 | { |
530 | 530 | "cell_type": "raw", |
531 | | - "id": "instructional-jefferson", |
| 531 | + "id": "infectious-authority", |
532 | 532 | "metadata": {}, |
533 | 533 | "source": [] |
534 | 534 | }, |
535 | 535 | { |
536 | 536 | "cell_type": "code", |
537 | 537 | "execution_count": null, |
538 | | - "id": "adopted-thinking", |
| 538 | + "id": "massive-panel", |
539 | 539 | "metadata": {}, |
540 | 540 | "outputs": [], |
541 | 541 | "source": [] |
542 | 542 | }, |
543 | 543 | { |
544 | 544 | "cell_type": "code", |
545 | 545 | "execution_count": null, |
546 | | - "id": "joint-prediction", |
| 546 | + "id": "sensitive-substance", |
547 | 547 | "metadata": {}, |
548 | 548 | "outputs": [], |
549 | 549 | "source": [] |
550 | 550 | }, |
551 | 551 | { |
552 | 552 | "cell_type": "code", |
553 | 553 | "execution_count": null, |
554 | | - "id": "rational-sight", |
| 554 | + "id": "terminal-salon", |
555 | 555 | "metadata": {}, |
556 | 556 | "outputs": [], |
557 | 557 | "source": [] |
558 | 558 | }, |
559 | 559 | { |
560 | 560 | "cell_type": "code", |
561 | 561 | "execution_count": null, |
562 | | - "id": "regular-merchandise", |
| 562 | + "id": "matched-guidance", |
563 | 563 | "metadata": {}, |
564 | 564 | "outputs": [], |
565 | 565 | "source": [] |
566 | 566 | }, |
567 | 567 | { |
568 | 568 | "cell_type": "code", |
569 | 569 | "execution_count": null, |
570 | | - "id": "lucky-wichita", |
| 570 | + "id": "fitted-going", |
571 | 571 | "metadata": {}, |
572 | 572 | "outputs": [], |
573 | 573 | "source": [] |
574 | 574 | }, |
575 | 575 | { |
576 | 576 | "cell_type": "code", |
577 | 577 | "execution_count": null, |
578 | | - "id": "infectious-purse", |
| 578 | + "id": "secret-associate", |
579 | 579 | "metadata": {}, |
580 | 580 | "outputs": [], |
581 | 581 | "source": [] |
582 | 582 | }, |
583 | 583 | { |
584 | 584 | "cell_type": "code", |
585 | 585 | "execution_count": null, |
586 | | - "id": "leading-fortune", |
| 586 | + "id": "emotional-search", |
587 | 587 | "metadata": {}, |
588 | 588 | "outputs": [], |
589 | 589 | "source": [] |
590 | 590 | }, |
591 | 591 | { |
592 | 592 | "cell_type": "code", |
593 | 593 | "execution_count": null, |
594 | | - "id": "instrumental-myrtle", |
| 594 | + "id": "worthy-property", |
595 | 595 | "metadata": {}, |
596 | 596 | "outputs": [], |
597 | 597 | "source": [] |
598 | 598 | }, |
599 | 599 | { |
600 | 600 | "cell_type": "code", |
601 | 601 | "execution_count": null, |
602 | | - "id": "naughty-holocaust", |
| 602 | + "id": "bright-given", |
603 | 603 | "metadata": {}, |
604 | 604 | "outputs": [], |
605 | 605 | "source": [] |
606 | 606 | }, |
607 | 607 | { |
608 | 608 | "cell_type": "code", |
609 | 609 | "execution_count": null, |
610 | | - "id": "important-proof", |
| 610 | + "id": "suspended-freedom", |
611 | 611 | "metadata": {}, |
612 | 612 | "outputs": [], |
613 | 613 | "source": [] |
614 | 614 | }, |
615 | 615 | { |
616 | 616 | "cell_type": "code", |
617 | 617 | "execution_count": null, |
618 | | - "id": "mighty-instruction", |
| 618 | + "id": "proper-county", |
619 | 619 | "metadata": {}, |
620 | 620 | "outputs": [], |
621 | 621 | "source": [] |
|
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