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@dependabot dependabot Bot commented on behalf of github May 12, 2026 •
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Updates the requirements on rich, mypy, networkx, orbax-checkpoint, pydata-sphinx-theme, pygad, pytest-cov, rtree, ruff, sax, pyvista and trame-vuetify to permit the latest version.
Updates rich to 15.0.0

Release notes

Sourced from rich's releases.

The So Long 3.8 Release

A few fixes. The major version bump is to honor the passing of 3.8 support which reached its EOL in October 7, 2024

[15.0.0] - 2026-04-12

Changed

  • Breaking change: Dropped support for Python3.8

Fixed

Changelog

Sourced from rich's changelog.

[15.0.0] - 2026-04-12

Changed

  • Breaking change: Dropped support for Python3.8

Fixed

[14.3.4] - 2026-04-11

Changed

[14.3.3] - 2026-02-19

Fixed

[14.3.2] - 2026-02-01

Fixed

[14.3.1] - 2026-01-24

Fixed

[14.3.0] - 2026-01-24

Fixed

Added

... (truncated)

Commits

Updates mypy from 1.13.0 to 1.20.2

Changelog

Sourced from mypy's changelog.

Mypy 1.20.2

  • Use WAL with SQLite cache and fix close (Shantanu, PR 21154)
  • Adjust SQLite journal mode (Ivan Levkivskyi, PR 21217)
  • Correctly aggregate narrowing information on parent expressions (Shantanu, PR 21206)
  • Fix regression related to generic callables (Shantanu, PR 21208)
  • Fix regression by avoiding widening types in some contexts (Shantanu, PR 21242)
  • Fix slicing in non-strict optional mode (Shantanu, PR 21282)
  • mypyc: Fix match statement semantics for "or" pattern (Shantanu, PR 21156)
  • mypyc: Fix issue with module dunder attributes (Piotr Sawicki, PR 21275)
  • Initial support for Python 3.15.0a8 (Marc Mueller, PR 21255)

Acknowledgements

Thanks to all mypy contributors who contributed to this release:

  • A5rocks
  • Aaron Wieczorek
  • Adam Turner
  • Ali Hamdan
  • asce
  • BobTheBuidler
  • Brent Westbrook
  • Brian Schubert
  • bzoracler
  • Chris Burroughs
  • Christoph Tyralla
  • Colin Watson
  • Donghoon Nam
  • E. M. Bray
  • Emma Smith
  • Ethan Sarp
  • George Ogden
  • getzze
  • grayjk
  • Gregor Riepl
  • Ivan Levkivskyi
  • James Hilliard
  • James Le Cuirot
  • Jeremy Nimmer
  • Joren Hammudoglu
  • Kai (Kazuya Ito)
  • kaushal trivedi
  • Kevin Kannammalil
  • Lukas Geiger
  • Łukasz Langa
  • Marc Mueller
  • Michael R. Crusoe
  • michaelm-openai
  • Neil Schemenauer
  • Piotr Sawicki

... (truncated)

Commits

Updates networkx to 3.4.2

Release notes

Sourced from networkx's releases.

NetworkX 3.4.2

We're happy to announce the release of networkx 3.4.2!

Bug Fixes

  • Fix docstrings of dispatchable functions (#7679).
  • Fix draw_networkx_nodes return type (#7685).

Documentation

  • Add disclaimer about LLM driven PRs (#7683).

Maintenance

  • Fix doc warnings from recently added docs (#7682).

Contributors

6 authors added to this release (alphabetically):

4 reviewers added to this release (alphabetically):

These lists are automatically generated, and may not be complete or may contain duplicates.

Commits

Updates orbax-checkpoint to 0.11.37

Release notes

Sourced from orbax-checkpoint's releases.

Release v0.11.37

Added

  • Add colocated runtime helpers for Pathways MTC.
  • #v1 Centralize StorageOptions into ArrayOptions and implement field-level merging.
  • Add Patch for Pathways CPU ids.
  • Add sidecar MTC backend support
  • Add Colocated Python Sidecar MTC Checkpoint Manager
  • Add Colocated Python Orchestration handling
  • #v1 Add LeafHandler as a CheckpointableHandler, so that ordinary PyTree leaves can also be saved as individual checkpointables.
  • Move MTC files to multi_tier_checkpointing and use local checkpoint engine

Changed

  • Reduced default OCDBT target file size from 2GiB to 400MiB for GCS paths.
Commits
  • 3a88d19 Release 0.11.37
  • f5bd624 Reduce default GCS target size to 400MiB for OCDBT in GCS
  • 218da6d Move MTC files to multi_tier_checkpointing and use local checkpoint engine
  • f222ff5 Internal Changes
  • 6296cc1 Allow loading a checkpoint to an abstract pytree derived from nnx.eval_shape.
  • b2b2764 Replace jax.sharding.SingleDeviceSharding with jax.sharding.make_single_devic...
  • d0dae2c No public description
  • 4f87dda Add Explicit Error when using SingleDeviceSharding in multi-process environme...
  • e25ca59 Defer immutability setting for partial saves.
  • a9b3108 Correctly use epath.Path.open as a context manager in async_open.
  • Additional commits viewable in compare view

Updates pydata-sphinx-theme to 0.17.1

Release notes

Sourced from pydata-sphinx-theme's releases.

v0.17.1

What's Changed

Fixes

Improvements

Dependencies

New Contributors

Full Changelog: pydata/pydata-sphinx-theme@v0.17.0...v0.17.1

Commits
  • a4986fa bump: 0.17.0 → 0.17.1 (#2355)
  • ff8be64 Fix default behavior when shorten_urls is unset (#2351)
  • 0867759 Replace broken Unsplash image URLs with Picsum in light-dark guide (#2341)
  • 56157e9 Bump octokit/request-action from 2.4.0 to 3.0.0 (#2346)
  • 8cce21d Bump pydata/pydata-sphinx-theme/.github/workflows/CI.yml from e8db643b990df73...
  • 30b4830 Bump pydata/pydata-sphinx-theme/.github/workflows/docs.yml from 43f9003549c49...
  • 6673b56 Fix docs build with sphinx 'extensions' config key (#2352)
  • ebc3f17 Fix search input receiving keystrokes after escape dismiss in Safari (#2338)
  • 8e67694 feat: add disable_search theme option (#2315)
  • cd00a86 bump: 0.16.2.dev0 -> 0.17.0
  • Additional commits viewable in compare view

Updates pygad from 3.3.1 to 3.6.0

Release notes

Sourced from pygad's releases.

PyGAD-3.6.0

  1. Support passing a class to the fitness, crossover, and mutation. ahmedfgad/GeneticAlgorithmPython#342

  2. A new class called Validation is created in the new pygad/utils/validation.py script. It has a method called validate_parameters() to validate all the parameters passed while instantiating the pygad.GA class.

  3. Refactoring the pygad.py script by moving a lot of functions and methods to other classes in other scripts.

  4. The summary() method was moved to Helper class in the pygad/helper/misc.py script.

  5. The validation code in the __init__() method of the pygad.GA class is moved to the new validate_parameters() method in the new Validation class in the new pygad/utils/validation.py script. Moreover, the validate_multi_stop_criteria() method is also moved to the same class.

  6. The GA main workflow is moved into the new GAEngine class in the new pygad/utils/engine.py script. Specifically, these methods are moved from the pygad.GA class to the new GAEngine class: 1. run() 1. run_loop_head() 2. run_select_parents() 3. run_crossover() 4. run_mutation() 5. run_update_population() 2. initialize_population() 3. cal_pop_fitness() 4. best_solution() 5. round_genes()

  7. The pygad.GA class now extends the two new classes utils.validation.Validation and utils.engine.GAEngine.

  8. The version of the pygad.utils submodule is upgraded from 1.3.0 to 1.4.0.

  9. The version of the pygad.helper submodule is upgraded from 1.2.0 to 1.3.0.

  10. The version of the pygad.visualize submodule is upgraded from 1.1.0 to 1.1.1.

  11. The version of the pygad.nn submodule is upgraded from 1.2.1 to 1.2.2.

  12. The version of the pygad.cnn submodule is upgraded from 1.1.0 to 1.1.1.

  13. The version of the pygad.torchga submodule is upgraded from 1.4.0 to 1.4.1.

  14. The version of the pygad.kerasga submodule is upgraded from 1.3.0 to 1.3.1.

  15. Update the elitism after the evolution ends to fix issue where the best solution returned by the best_solution() method is not correct. ahmedfgad/GeneticAlgorithmPython#337

  16. Fix a bug in calling the numpy.reshape() function. The parameter newshape is removed since it is no longer supported started from NumPy 2.4.0. https://numpy.org/doc/stable/release/2.4.0-notes.html#removed-newshape-parameter-from-numpy-reshape

  17. A minor change in the documentation is made to replace the newshape parameter when calling numpy.reshape().

  18. Fix a bug in the visualize/plot.py script that causes a warning to be given when the plot leged is used with single-objective problems.

  19. A new method called initialize_parents_array() is added to the Helper class in the pygad/helper/misc.py script. It is usually called from the methods in the ParentSelection class in the pygad/utils/parent_selection.py script to initialize the parents array.

  20. Add more tests about: 1. Operators (crossover, mutation, and parent selection). 2. The best_solution() method. 3. Parallel processing. 4. The GANN module. 5. The plots created by the visualize.

  21. Instead of using repeated code for converting the data type and rounding the genes during crossover and mutation, the change_gene_dtype_and_round() method is called from the pygad.helper.misc.Helper class.

  22. Fix some documentation issues. ahmedfgad/GeneticAlgorithmPython#336

  23. Update the documentation to reflect the recent additions and changes to the library structure.

PyGAD-3.5.0

  1. Fix a bug when minus sign (-) is used inside the stop_criteria parameter for multi-objective problems. ahmedfgad/GeneticAlgorithmPython#314 ahmedfgad/GeneticAlgorithmPython#323
  2. Fix a bug when the stop_criteria parameter is passed as an iterable (e.g. list) for multi-objective problems (e.g. ['reach_50_60', 'reach_20, 40']). ahmedfgad/GeneticAlgorithmPython#314
  3. Call the get_matplotlib() function from the plot_genes() method inside the pygad.visualize.plot.Plot class to import the matplotlib library. ahmedfgad/GeneticAlgorithmPython#315
  4. Create a new helper method called select_unique_value() inside the pygad/helper/unique.py script to select a unique gene from an array of values.
  5. Create a new helper method called get_random_mutation_range() inside the pygad/utils/mutation.py script that returns the random mutation range (min and max) for a single gene by its index.
  6. Create a new helper method called change_random_mutation_value_dtype inside the pygad/utils/mutation.py script that changes the data type of the value used to apply random mutation.
  7. Create a new helper method called round_random_mutation_value() inside the pygad/utils/mutation.py script that rounds the value used to apply random mutation.
  8. Create the pygad/helper/misc.py script with a class called Helper that has the following helper methods:

... (truncated)

Commits

Updates pytest-cov to 7.1.0

Changelog

Sourced from pytest-cov's changelog.

7.1.0 (2026-03-21)

  • Fixed total coverage computation to always be consistent, regardless of reporting settings. Previously some reports could produce different total counts, and consequently can make --cov-fail-under behave different depending on reporting options. See [#641](https://github.com/pytest-dev/pytest-cov/issues/641) <https://github.com/pytest-dev/pytest-cov/issues/641>_.

  • Improve handling of ResourceWarning from sqlite3.

    The plugin adds warning filter for sqlite3 ResourceWarning unclosed database (since 6.2.0). It checks if there is already existing plugin for this message by comparing filter regular expression. When filter is specified on command line the message is escaped and does not match an expected message. A check for an escaped regular expression is added to handle this case.

    With this fix one can suppress ResourceWarning from sqlite3 from command line::

    pytest -W "ignore:unclosed database in <sqlite3.Connection object at:ResourceWarning" ...

  • Various improvements to documentation. Contributed by Art Pelling in [#718](https://github.com/pytest-dev/pytest-cov/issues/718) <https://github.com/pytest-dev/pytest-cov/pull/718>_ and "vivodi" in [#738](https://github.com/pytest-dev/pytest-cov/issues/738) <https://github.com/pytest-dev/pytest-cov/pull/738>. Also closed [#736](https://github.com/pytest-dev/pytest-cov/issues/736) <https://github.com/pytest-dev/pytest-cov/issues/736>.

  • Fixed some assertions in tests. Contributed by in Markéta Machová in [#722](https://github.com/pytest-dev/pytest-cov/issues/722) <https://github.com/pytest-dev/pytest-cov/pull/722>_.

  • Removed unnecessary coverage configuration copying (meant as a backup because reporting commands had configuration side-effects before coverage 5.0).

7.0.0 (2025-09-09)

  • Dropped support for subprocesses measurement.

    It was a feature added long time ago when coverage lacked a nice way to measure subprocesses created in tests. It relied on a .pth file, there was no way to opt-out and it created bad interations with coverage's new patch system <https://coverage.readthedocs.io/en/latest/config.html#run-patch>_ added in 7.10 <https://coverage.readthedocs.io/en/7.10.6/changes.html#version-7-10-0-2025-07-24>_.

    To migrate to this release you might need to enable the suprocess patch, example for .coveragerc:

    .. code-block:: ini

    [run] patch = subprocess

    This release also requires at least coverage 7.10.6.

  • Switched packaging to have metadata completely in pyproject.toml and use hatchling <https://pypi.org/project/hatchling/>_ for building. Contributed by Ofek Lev in [#551](https://github.com/pytest-dev/pytest-cov/issues/551) <https://github.com/pytest-dev/pytest-cov/pull/551>_ with some extras in [#716](https://github.com/pytest-dev/pytest-cov/issues/716) <https://github.com/pytest-dev/pytest-cov/pull/716>_.

  • Removed some not really necessary testing deps like six.

... (truncated)

Commits
  • 66c8a52 Bump version: 7.0.0 → 7.1.0
  • f707662 Make the examples use pypy 3.11.
  • 6049a78 Make context test use the old ctracer (seems the new sysmon tracer behaves di...
  • 8ebf20b Update changelog.
  • 861d30e Remove the backup context manager - shouldn't be needed since coverage 5.0, ...
  • fd4c956 Pass the precision on the nulled total (seems that there's some caching goion...
  • 78c9c4e Only run the 3.9 on older deps.
  • 4849a92 Punctuation.
  • 197c35e Update changelog and hopefully I don't forget to publish release again :))
  • 14dc1c9 Update examples to use 3.11 and make the adhoc layout example look a bit more...
  • Additional commits viewable in compare view

Updates rtree from 1.2.0 to 1.4.1

Release notes

Sourced from rtree's releases.

1.4.1b3

What's Changed

Full Changelog: Toblerity/rtree@1.4.1b1...1.4.1b3

1.4.1b1

What's Changed

New Contributors

Full Changelog: Toblerity/rtree@1.4.0...1.4.1b1

1.4.0

  • Python 3.9+ is now required (#321)
  • Add support for array-based bulk insert with NumPy (#340 by @​FreddieWitherden)
  • Upgrade binary wheels with libspatialindex-2.1.0 (#353)
  • Rename project and other build components to “rtree” (#350)

1.3.0

  • Upgrade binary wheels with libspatialindex-2.0.0 (#316)
  • Fix binary wheels for musllinux (#316)
  • Update code style, replace isort and black with ruff, modern numpy rng (#319)
  • Remove libsidx version testing (#313)
Changelog

Sourced from rtree's changelog.

1.4.1: 2025-08-13

  • Rename main branch references by :user:mwtoews in :PR:356
  • Fixing an incorrect reassignment in nearest_v and intersection_v by :user:Atilleusz in :PR:358
  • Add spatialindex version to tests, add common pytest configuration by :user:mwtoews in :PR:360
  • Refactor array-loading methods, add tests by :user:mwtoews in :PR:361
  • Minor refactor of code blocks in docs by :user:mwtoews in :PR:362
  • Resolve some issues in the batch API by :user:FreddieWitherden in :PR:367
  • fix #369 (load libspatialindex without changing cwd) by :user:remicres in :PR:370
  • arm64 wheels on windows by @​w8sl in :PR:378 and :PR:371

Full Changelog <https://github.com/Toblerity/rtree/compare/1.4.0...1.4.1>__

1.4.0: 2025-03-06

  • Python 3.9+ is now required (:PR:321)
  • Add support for array-based bulk insert with NumPy (:PR:340 by :user:FreddieWitherden)
  • Upgrade binary wheels with libspatialindex-2.1.0 (:PR:353)
  • Rename project and other build components to "rtree" (:PR:350)

1.3.0: 2024-07-10

  • Upgrade binary wheels with libspatialindex-2.0.0 (:PR:316)
  • Fix binary wheels for musllinux wheels (:PR:316)
  • Update code style, replace isort and black with ruff, modern numpy rng (:PR:319)
  • Remove libsidx version testing (:PR:313)
Commits

Updates ruff from 0.14.1 to 0.15.12

Release notes

Sourced from ruff's releases.

0.15.12

Release Notes

Released on 2026-04-24.

Preview features

  • Implement #ruff:file-ignore file-level suppressions (#23599)
  • Implement #ruff:ignore logical-line suppressions (#23404)
  • Revert preview changes to displayed diagnostic severity in LSP (#24789)
  • [airflow] Implement task-branch-as-short-circuit (AIR004) (#23579)
  • [flake8-bugbear] Fix break/continue handling in loop-iterator-mutation (B909) (#24440)
  • [pylint] Fix PLC2701 for type parameter scopes (#24576)

Rule changes

  • [pandas-vet] Suggest .array as well in PD011 (#24805)

CLI

  • Respect default Unix permissions for cache files (#24794)

Documentation

  • [pylint] Fix PLR0124 description not to claim self-comparison always returns the same value (#24749)
  • [pyupgrade] Expand docs on reusable TypeVars and scoping (UP046) (#24153)
  • Improve rules table accessibility (#24711)

Contributors

Install ruff 0.15.12

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/ruff/releases/download/0.15.12/ruff-installer.sh | sh

... (truncated)

Changelog

Sourced from ruff's changelog.

0.15.12

Released on 2026-04-24.

Preview features

  • Implement #ruff:file-ignore file-level suppressions (#23599)
  • Implement #ruff:ignore logical-line suppressions (#23404)
  • Revert preview changes to displayed diagnostic severity in LSP (#24789)
  • [airflow] Implement task-branch-as-short-circuit (AIR004) (#23579)
  • [flake8-bugbear] Fix break/continue handling in loop-iterator-mutation (B909) (#24440)
  • [pylint] Fix PLC2701 for type parameter scopes (#24576)

Rule changes

  • [pandas-vet] Suggest .array as well in PD011 (#24805)

CLI

  • Respect default Unix permissions for cache files (#24794)

Documentation

  • [pylint] Fix PLR0124 description not to claim self-comparison always returns the same value (#24749)
  • [pyupgrade] Expand docs on reusable TypeVars and scoping (UP046) (#24153)
  • Improve rules table accessibility (#24711)

Contributors

0.15.11

Released on 2026-04-16.

Preview features

  • [ruff] Ignore RUF029 when function is decorated with asynccontextmanager (#24642)
  • [airflow] Implement airflow-xcom-pull-in-template-string (AIR201) (#23583)
  • [flake8-bandit] Fix S103 false positives and negatives in mask analysis (#24424)

... (truncated)

Commits
  • 66f93cf Bump 0.15.12 (#24815)
  • 476a4d0 [ty] Complete support for more detailed diagnostics on possibly unbound error...
  • ed669ea Implement #ruff:file-ignore file-level suppressions (#23599)
  • e73d952 [ty] Include inferred type in invalid-key concise diagnostic for union/inte...
  • 80feb29 [ty] report only dead annotation-only locals as unused (#24811)
  • 0fbf2bc Drop deprecated license classifier (#24808)
  • 43b174c [ty] Infer lambda parameter types with Callable type context (#24317)
  • 4f449ae [ty] Add error context for intersection types (#24772)
  • 5b4e753 [ty] Add support for goto in literal enum member inlay hint (#24792)
  • e7cc762 [ty] Add error context for TypedDict assignments (#24790)
  • Additional commits viewable in compare view

Updates sax to 0.14.2

Release notes

Sourced from sax's releases.

0.14.2

What's Changed

New

  • extra_netlist_cleanup argument

Other changes

  • Updated Docker image
  • Updated Makefile

Full Changelog: flaport/sax@0.14.1...0.14.2

Changelog

Sourced from sax's changelog.

0.14.2 - 2025-02-13

What's Changed

New

  • extra_netlist_cleanup argument

Other changes

  • Updated Docker image
  • Updated Makefile

Full Changelog: flaport/sax@0.14.1...0.14.2

[Changes][0.14.2]

0.14.1 - 2024-11-15

What's Changed

Other changes

  • Updated Makefile
  • Updated Dockerfile

Full Changelog: flaport/sax@0.14.0...0.14.1

[Changes][0.14.1]

0.14.0 - 2024-11-13

What's Changed

New

  • Backend information to CircuitInfo
  • Documentation and examples
  • Coercion of nets into connections
  • Handle for callable instances in connections
  • Tests for cleanup and refactoring

Deprecated

  • info subdirectory in instance dictionary
  • sax.nn module

... (truncated)

Commits

Updates pyvista to 0.48.0

Release notes

Description has been truncated

[!NOTE]
Low Risk
Low risk: changes are limited to dependency version pin/upper-bound updates in pyproject.toml, with no runtime code modifications; main risk is incompatibility from newly-allowed major versions during installs/tests.

Overview
Dependency-only update. Adjusts pyproject.toml to permit newer releases across runtime and optional groups.

Notable bumps/widened bounds include rich (<16), mypy (1.13.0→1.20.2), networkx (<4), orbax-checkpoint (<0.11.38), pytest-cov (<8), rtree (1.2.0→1.4.1), ruff (0.14.1→0.15.12), sax (<0.15), plus pyvista (<0.49) and trame-vuetify (<4), and updates to pydata-sphinx-theme and pygad.

Reviewed by Cursor Bugbot for commit fb2b211. Bugbot is set up for automated code reviews on this repo. Configure here.

@dependabot
chore(deps): bump the python group across 1 directory with 12 updates
fb2b211 
Updates the requirements on [rich](https://github.com/Textualize/rich), [mypy](https://github.com/python/mypy), [networkx](https://github.com/networkx/networkx), [orbax-checkpoint](https://github.com/google/orbax), [pydata-sphinx-theme](https://github.com/pydata/pydata-sphinx-theme), [pygad](https://github.com/ahmedfgad/GeneticAlgorithmPython), [pytest-cov](https://github.com/pytest-dev/pytest-cov), [rtree](https://github.com/Toblerity/rtree), [ruff](https://github.com/astral-sh/ruff), [sax](https://github.com/flaport/sax), [pyvista](https://github.com/pyvista/pyvista) and [trame-vuetify](https://github.com/Kitware/trame-vuetify) to permit the latest version.

Updates `rich` to 15.0.0
- [Release notes](https://github.com/Textualize/rich/releases)
- [Changelog](https://github.com/Textualize/rich/blob/master/CHANGELOG.md)
- [Commits](Textualize/rich@v13.0.0...v15.0.0)

Updates `mypy` from 1.13.0 to 1.20.2
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v1.13.0...v1.20.2)

Updates `networkx` to 3.4.2
- [Release notes](https://github.com/networkx/networkx/releases)
- [Commits](networkx/networkx@networkx-2.6.3...networkx-3.4.2)

Updates `orbax-checkpoint` to 0.11.37
- [Release notes](https://github.com/google/orbax/releases)
- [Changelog](https://github.com/google/orbax/blob/main/CHANGELOG.md)
- [Commits](google/orbax@v0.0.0...v0.11.37)

Updates `pydata-sphinx-theme` to 0.17.1
- [Release notes](https://github.com/pydata/pydata-sphinx-theme/releases)
- [Changelog](https://github.com/pydata/pydata-sphinx-theme/blob/main/RELEASE.md)
- [Commits](pydata/pydata-sphinx-theme@v0.13.3...v0.17.1)

Updates `pygad` from 3.3.1 to 3.6.0
- [Release notes](https://github.com/ahmedfgad/GeneticAlgorithmPython/releases)
- [Commits](ahmedfgad/GeneticAlgorithmPython@3.3.1...3.6.0)

Updates `pytest-cov` to 7.1.0
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-cov@v6.0.0...v7.1.0)

Updates `rtree` from 1.2.0 to 1.4.1
- [Release notes](https://github.com/Toblerity/rtree/releases)
- [Changelog](https://github.com/Toblerity/rtree/blob/main/CHANGES.rst)
- [Commits](Toblerity/rtree@1.2.0...1.4.1)

Updates `ruff` from 0.14.1 to 0.15.12
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.14.1...0.15.12)

Updates `sax` to 0.14.2
- [Release notes](https://github.com/flaport/sax/releases)
- [Changelog](https://github.com/flaport/sax/blob/main/CHANGELOG.md)
- [Commits](flaport/sax@0.11.0...0.14.2)

Updates `pyvista` to 0.48.0
- [Release notes](https://github.com/pyvista/pyvista/releases)
- [Commits](pyvista/pyvista@v0.45.0...v0.48.0)

Updates `trame-vuetify` to 3.2.2
- [Release notes](https://github.com/Kitware/trame-vuetify/releases)
- [Changelog](https://github.com/Kitware/trame-vuetify/blob/master/CHANGELOG.md)
- [Commits](Kitware/trame-vuetify@v2.0.1...v3.2.2)

---
updated-dependencies:
- dependency-name: rich
  dependency-version: 15.0.0
  dependency-type: direct:production
  dependency-group: python
- dependency-name: mypy
  dependency-version: 1.20.2
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: networkx
  dependency-version: 3.4.2
  dependency-type: direct:development
  dependency-group: python
- dependency-name: orbax-checkpoint
  dependency-version: 0.11.37
  dependency-type: direct:development
  dependency-group: python
- dependency-name: pydata-sphinx-theme
  dependency-version: 0.17.1
  dependency-type: direct:development
  dependency-group: python
- dependency-name: pygad
  dependency-version: 3.6.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: pytest-cov
  dependency-version: 7.1.0
  dependency-type: direct:development
  dependency-group: python
- dependency-name: rtree
  dependency-version: 1.4.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: ruff
  dependency-version: 0.15.12
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: sax
  dependency-version: 0.14.2
  dependency-type: direct:development
  dependency-group: python
- dependency-name: pyvista
  dependency-version: 0.48.0
  dependency-type: direct:development
  dependency-group: python
- dependency-name: trame-vuetify
  dependency-version: 3.2.2
  dependency-type: direct:development
  dependency-group: python
...

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