Update pyproject.toml

Author: FBumann

pyproject.toml

@@ -36,72 +36,76 @@ dependencies = [
     # Core scientific computing
     "numpy >= 1.21.5, < 3",
     "pandas >= 2.0.0, < 3",
+    "xarray >= 2024.2.0, < 2026.0",  # CalVer: allow through next calendar year
     # Optimization and data handling
-    "linopy >= 0.5.1, < 0.5.6",  # Update and test regularly
+    "linopy >= 0.5.1, < 0.6",  # Widened from patch pin to minor range
     "netcdf4 >= 1.6.1, < 2",
     # Utilities
-    "PyYAML >= 6.0.0, < 7",
-    "rich >= 13.0.0",
-    "tomli >= 2.0.1; python_version < '3.11'", # Only needed with python 3.10 or earlier
+    "pyyaml >= 6.0.0, < 7",
+    "rich >= 13.0.0, < 15",
+    "tomli >= 2.0.1, < 3; python_version < '3.11'", # Only needed with python 3.10 or earlier
     # Default solver
-    "highspy >= 1.5.3",
+    "highspy >= 1.5.3, < 2",
 
     # Visualization
-    "matplotlib >= 3.5.2, < 4.0.0",
-    "plotly >= 5.15.0, < 6.0.0",
+    "matplotlib >= 3.5.2, < 4",
+    "plotly >= 5.15.0, < 7",
 ]
 
 [project.optional-dependencies]
 # Interactive network visualization with enhanced color picker
-network-viz = [
-    "dash >= 3.0.0",
-    "dash-cytoscape >= 1.0.0",
-    "dash-daq >= 0.6.0",
-    "networkx >= 3.0.0",
-    "werkzeug >= 3.0.0",
+network_viz = [
+    "dash >= 3.0.0, < 4",
+    "dash-cytoscape >= 1.0.0, < 2",
+    "dash-daq >= 0.6.0, < 1",
+    "networkx >= 3.0.0, < 4",
+    "werkzeug >= 3.0.0, < 4",
+    "flask >= 3.0.0, < 4",  # Explicit Flask cap to prevent transitive major bumps
 ]
 
 # Full feature set (everything except dev tools)
 full = [
-    "pyvis == 0.3.1",  # Visualizing FlowSystem Network
-    "tsam >= 2.3.1, < 3.0.0",   # Time series aggregation
-    "scipy >= 1.15.1, < 2.0.0", # Used by tsam. Prior versions have conflict with highspy. See https://github.com/scipy/scipy/issues/22257
-    "gurobipy >= 10.0.0",
-    "dash >= 3.0.0",  # Visualizing FlowSystem Network as app
-    "dash-cytoscape >= 1.0.0",  # Visualizing FlowSystem Network as app
-    "dash-daq >= 0.6.0",  # Visualizing FlowSystem Network as app
-    "networkx >= 3.0.0",  # Visualizing FlowSystem Network as app
-    "werkzeug >= 3.0.0",  # Visualizing FlowSystem Network as app
+    "pyvis==0.3.2",  # Visualizing FlowSystem Network
+    "tsam >= 2.3.1, < 3",   # Time series aggregation
+    "scipy >= 1.15.1, < 2", # Used by tsam. Prior versions have conflict with highspy. See https://github.com/scipy/scipy/issues/22257
+    "gurobipy >= 10.0.0, < 13",
+    "dash >= 3.0.0, < 4",  # Visualizing FlowSystem Network as app
+    "dash-cytoscape >= 1.0.0, < 2",  # Visualizing FlowSystem Network as app
+    "dash-daq >= 0.6.0, < 1",  # Visualizing FlowSystem Network as app
+    "networkx >= 3.0.0, < 4",  # Visualizing FlowSystem Network as app
+    "werkzeug >= 3.0.0, < 4",  # Visualizing FlowSystem Network as app
+    "flask >= 3.0.0, < 4",  # Explicit Flask cap to prevent transitive major bumps
 ]
 
 # Development tools and testing
 dev = [
-    "pytest >= 7.0.0",
-    "ruff >= 0.9.0",
-    "pre-commit >= 4.0.0",
-    "pyvis == 0.3.1",  # Visualizing FlowSystem
-    "tsam >= 2.3.1, < 3.0.0",   # Time series aggregation
-    "scipy >= 1.15.1, < 2.0.0", # Used by tsam. Prior versions have conflict with highspy. See https://github.com/scipy/scipy/issues/22257
-    "gurobipy >= 10.0.0",
-    "dash >= 3.0.0",
-    "dash-cytoscape >= 1.0.0",
-    "dash-daq >= 0.6.0",
-    "networkx >= 3.0.0",
-    "werkzeug >= 3.0.0",
+    "pytest==8.4.2",
+    "nbformat==5.10.4",
+    "ruff==0.13.0",
+    "pre-commit==4.3.0",
+    "pyvis==0.3.2",
+    "tsam==2.3.1",
+    "scipy==1.15.1",
+    "gurobipy==12.0.3",
+    "dash==3.0.0",
+    "dash-cytoscape==1.0.2",
+    "dash-daq==0.6.0",
+    "networkx==3.0.0",
+    "werkzeug==3.0.0",
 ]
 
 # Documentation building
 docs = [
-    "mkdocs-material >= 9.0.0, < 10",
-    "mkdocstrings-python >= 1.0.0",
-    "mkdocs-table-reader-plugin >= 2.0.0",
-    "mkdocs-gen-files >= 0.4.0",
-    "mkdocs-include-markdown-plugin >= 6.0.0",
-    "mkdocs-literate-nav >= 0.6.0",
-    "markdown-include >= 0.8.0",
-    "pymdown-extensions >= 10.0.0",
-    "pygments >= 2.14.0",
-    "mike >= 2.0.0",
+    "mkdocs-material==9.6.19",
+    "mkdocstrings-python==1.18.2",
+    "mkdocs-table-reader-plugin==3.1.0",
+    "mkdocs-gen-files==0.5.0",
+    "mkdocs-include-markdown-plugin==7.1.7",
+    "mkdocs-literate-nav==0.6.2",
+    "markdown-include==0.8.1",
+    "pymdown-extensions==10.16.1",
+    "pygments==2.19.2",
+    "mike==2.1.3",
 ]
 
 [project.urls]
@@ -120,6 +124,7 @@ exclude = ["tests", "docs", "examples", "examples.*", "Tutorials", ".git", ".vsc
 version_scheme = "post-release"
 
 [tool.ruff]
+target-version = "py310"  # Adjust to your minimum version
 # Files or directories to exclude (e.g., virtual environments, cache, build artifacts)
 exclude = [
     "venv",  # Virtual environments
@@ -133,10 +138,26 @@ exclude = [
 line-length = 120
 
 [tool.ruff.lint]
-select = ["E", "F", "W", "I", "B", "N"]  # Enable linting rules by category (e.g., error, warnings, unused imports)
+select = [
+    # Core Python issues
+    "E",     # pycodestyle errors (PEP 8 violations)
+    "F",     # Pyflakes (undefined names, unused imports, etc.)
+    "W",     # pycodestyle warnings (whitespace, line length, etc.)
+
+    # Code organization
+    "I",     # isort (import sorting and organization)
+    "B",     # flake8-bugbear (likely bugs and design problems)
+    "N",     # pep8-naming (naming convention violations)
+
+    # Modern Python upgrades
+    "UP",    # pyupgrade (modernize syntax for target Python version)
+    "FA",    # flake8-future-annotations (enforce `from __future__ import annotations`)
+    "TCH",   # flake8-type-checking (optimize imports for type checking)
+]
 ignore = [  # Ignore specific rules
-    "E501",  # Ignore line-length checks (use Black for formatting)
     "F401",  # Allow unused imports in some cases (use __all__)
+    "UP038",
+    "E501"  # ignore long lines
 ]
 extend-fixable = ["B"]   # Enable fix for flake8-bugbear (`B`), on top of any rules specified by `fixable`.
 
@@ -151,6 +172,9 @@ quote-style = "single"
 indent-style = "space"
 docstring-code-format = true
 
+[tool.ruff.lint.pyupgrade]
+keep-runtime-typing = false  # Allow pyupgrade to drop runtime typing; prefer postponed annotations
+
 [tool.bandit]
 skips = ["B101", "B506"]  # assert_used and yaml_load
 exclude_dirs = ["tests/"]