From c9174340463714367e09ca89acced244f09cf8a1 Mon Sep 17 00:00:00 2001 From: Shelley Doljack Date: Fri, 10 Oct 2025 10:30:10 -0600 Subject: [PATCH 01/11] Updates apache-airflow to version 3. --- pyproject.toml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 702491d..8a79a9f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -8,14 +8,14 @@ license = "Apache-2.0" [tool.poetry.dependencies] python = ">=3.11,<3.13" -apache-airflow = "^2.10.5" +apache-airflow = "^3.1.0" faker = "^37.1.0" jsonpath-ng = "^1.7.0" pydantic = "^2.11.4" psycopg2 = "^2.9.10" [tool.poetry.group.test.dependencies] -apache-airflow = "^2.10.5" +apache-airflow = "^3.1.0" black = "^24.10.0" mypy = "^1.13.0" flake8 = "^7.1.1" From 74a5526dea7058be053af8617a8e73013ae9761b Mon Sep 17 00:00:00 2001 From: Shelley Doljack Date: Thu, 30 Oct 2025 20:58:54 -0600 Subject: [PATCH 02/11] Updates helm values file for airflow 3. --- README.md | 23 +- airflow-values.yaml | 139 ++- poetry.lock | 2779 +++++++++++++++++-------------------------- 3 files changed, 1188 insertions(+), 1753 deletions(-) diff --git a/README.md b/README.md index 4751de1..aec1199 100644 --- a/README.md +++ b/README.md @@ -43,12 +43,23 @@ Instructions on generating a Fernet key can be found at [How-to Guides: Securing Example: ``` poetry run python3 ->>> from cryptography.fernet import Fernet ->>> fernet_key= Fernet.generate_key() ->>> decoded_fernet_key = fernet_key.decode() +from cryptography.fernet import Fernet +fernet_key= Fernet.generate_key() +decoded_fernet_key = fernet_key.decode() +quit() echo -n $decoded_fernet_key | base64 ``` +Airflow 3 uses a secret key to encode and decode JWTs to authenticate to public and private APIs. To generate the airflow-jwt-secret-key, you can do: +``` +poetry run python3 +import secrets +jwt_key = secrets.token_urlsafe(16) +print(jwt_key) +quit() +echo -n $jwt_key | base64 +``` + Once you have generated the desired keys and password apply it to your Kubernetes cluster using: ``` export NAMESPACE= @@ -64,7 +75,7 @@ With [Docker Desktop](https://docs.docker.com/desktop/), [Helm](https://helm.sh/ export NAMESPACE= kubectl -n $NAMESPACE apply -f pv-volume.yaml envsubst < airflow-values.yaml > ns-airflow-values.yaml -helm -n $NAMESPACE install --version 22.7.3 -f ns-airflow-values.yaml airflow oci://registry-1.docker.io/bitnamicharts/airflow +helm -n $NAMESPACE install --version=25.0.2 -f ns-airflow-values.yaml airflow oci://registry-1.docker.io/bitnamicharts/airflow ``` Note: in the `pv-volume.yaml` file you must use a storageClass that supports ReadWriteMany. If you do not specify a storageClassName, the default storageClass for your cluster will be used. @@ -74,11 +85,11 @@ To upgrade or to reinitialize the airflow release when configuration changes are ``` envsubst < airflow-values.yaml > ns-airflow-values.yaml export PASSWORD=$(kubectl get secret -n $NAMESPACE airflow-postgresql -o jsonpath="{.data.password}" | base64 -d) -helm -n $NAMESPACE upgrade --install --version 22.7.3 --set global.postgresql.auth.password=$PASSWORD -f ns-airflow-values.yaml airflow oci://registry-1.docker.io/bitnamicharts/airflow +helm -n $NAMESPACE upgrade --install --version=25.0.2 --set global.postgresql.auth.password=$PASSWORD -f ns-airflow-values.yaml airflow oci://registry-1.docker.io/bitnamicharts/airflow ``` ## Run the DAGs to Anonymize Data -1. Either create an ingress for the airflow service that resolves to a hostname, or simply port-forward the airflow service to your local browser: `kubectl -n $NAMESPACE port-forward svc/airflow 8080:8080` +1. Either create an ingress for the airflow service that resolves to a hostname, or simply port-forward the airflow service to your local browser: `kubectl -n $NAMESPACE port-forward svc/airflow-web 8080:8080` 1. Open your browser and go to localhost:8080 (or the URL if you created a hostname and ingress). 1. Login with the user airflow and the airflow-password created with the secret.yaml file. 1. Create a new Connection under Admin > Connections. diff --git a/airflow-values.yaml b/airflow-values.yaml index 180fbbf..c5ab083 100644 --- a/airflow-values.yaml +++ b/airflow-values.yaml @@ -21,6 +21,11 @@ configuration: auth: username: airflow existingSecret: airflow-user +image: + repository: bitnamilegacy/airflow +global: + security: + allowInsecureImages: true dags: enabled: true repositories: @@ -36,10 +41,14 @@ plugins: name: "plugins" path: /folio_data_anonymization/plugins postgresql: + image: + repository: bitnamilegacy/postgresql + tag: 17.6.0-debian-12-r2 primary: resourcesPreset: "medium" setupDBJob: resourcesPreset: "medium" + automountServiceAccountToken: true extraVolumes: - name: airflow-dependencies persistentVolumeClaim: @@ -59,7 +68,7 @@ setupDBJob: initContainers: - name: install-dependencies image: "{{ include \"airflow.image\" . }}" - imagePullPolicy: "{{ .Values.image.pullPolicy }}" + imagePullPolicy: IfNotPresent env: - name: PYTHONPATH value: "/opt/bitnami/airflow:/opt/bitnami/airflow/lib" @@ -76,7 +85,7 @@ setupDBJob: subPath: requirements.txt - name: airflow-dependencies mountPath: /opt/bitnami/airflow/lib -worker: +dagProcessor: automountServiceAccountToken: true extraVolumeMounts: - name: airflow-dependencies @@ -84,42 +93,34 @@ worker: - name: airflow-logs mountPath: "/opt/bitnami/airflow_logs" extraVolumes: - - name: airflow-dependencies - persistentVolumeClaim: - claimName: airflow-dependencies - - name: airflow-logs - persistentVolumeClaim: - claimName: airflow-logs - extraEnvVars: - - name: PYTHONPATH - value: "/opt/bitnami/airflow:/opt/bitnami/airflow/lib" - resourcesPreset: "large" -web: - replicaCount: 1 - automountServiceAccountToken: true - extraVolumeMounts: - - name: airflow-dependencies - mountPath: "/opt/bitnami/airflow/lib" - - name: airflow-logs - mountPath: "/opt/bitnami/airflow_logs" - extraVolumes: - - name: airflow-dependencies - persistentVolumeClaim: - claimName: airflow-dependencies - - name: airflow-logs - persistentVolumeClaim: - claimName: airflow-logs + - name: airflow-dependencies + persistentVolumeClaim: + claimName: airflow-dependencies + - name: airflow-logs + persistentVolumeClaim: + claimName: airflow-logs extraEnvVars: - name: PYTHONPATH value: "/opt/bitnami/airflow:/opt/bitnami/airflow/lib" - resourcesPreset: "xlarge" - readinessProbe: + resources: + requests: + cpu: 2.5 + memory: 5376Mi + ephemeral-storage: 50Mi + limits: + cpu: 3.5 + memory: 6144Mi + ephemeral-storage: 2Gi + livenessProbe: enabled: true - initialDelaySeconds: 35 - periodSeconds: 15 - timeoutSeconds: 5 - failureThreshold: 10 + initialDelaySeconds: 180 + periodSeconds: 20 + timeoutSeconds: 60 + failureThreshold: 300 successThreshold: 1 + readinessProbe: + enabled: true + failureThreshold: 20 scheduler: replicaCount: 1 automountServiceAccountToken: true @@ -157,6 +158,76 @@ scheduler: readinessProbe: enabled: true failureThreshold: 20 +triggerer: + replicaCount: 1 + automountServiceAccountToken: true + extraVolumeMounts: + - name: airflow-dependencies + mountPath: "/opt/bitnami/airflow/lib" + - name: airflow-logs + mountPath: "/opt/bitnami/airflow_logs" + extraVolumes: + - name: airflow-dependencies + persistentVolumeClaim: + claimName: airflow-dependencies + - name: airflow-logs + persistentVolumeClaim: + claimName: airflow-logs + extraEnvVars: + - name: PYTHONPATH + value: "/opt/bitnami/airflow:/opt/bitnami/airflow/lib" + resourcesPreset: "xlarge" + readinessProbe: + enabled: true + initialDelaySeconds: 35 + periodSeconds: 15 + timeoutSeconds: 5 + failureThreshold: 10 + successThreshold: 1 +web: + replicaCount: 1 + automountServiceAccountToken: true + extraVolumeMounts: + - name: airflow-dependencies + mountPath: "/opt/bitnami/airflow/lib" + - name: airflow-logs + mountPath: "/opt/bitnami/airflow_logs" + extraVolumes: + - name: airflow-dependencies + persistentVolumeClaim: + claimName: airflow-dependencies + - name: airflow-logs + persistentVolumeClaim: + claimName: airflow-logs + extraEnvVars: + - name: PYTHONPATH + value: "/opt/bitnami/airflow:/opt/bitnami/airflow/lib" + resourcesPreset: "xlarge" + readinessProbe: + enabled: true + initialDelaySeconds: 35 + periodSeconds: 15 + timeoutSeconds: 5 + failureThreshold: 10 + successThreshold: 1 +worker: + automountServiceAccountToken: true + extraVolumeMounts: + - name: airflow-dependencies + mountPath: "/opt/bitnami/airflow/lib" + - name: airflow-logs + mountPath: "/opt/bitnami/airflow_logs" + extraVolumes: + - name: airflow-dependencies + persistentVolumeClaim: + claimName: airflow-dependencies + - name: airflow-logs + persistentVolumeClaim: + claimName: airflow-logs + extraEnvVars: + - name: PYTHONPATH + value: "/opt/bitnami/airflow:/opt/bitnami/airflow/lib" + resourcesPreset: "large" extraDeploy: - apiVersion: v1 kind: ConfigMap @@ -167,4 +238,4 @@ extraDeploy: requirements.txt: |- faker==37.1.0 jsonpath-ng==1.7.0 - pydantic==2.11.4 + pydantic==2.11.4 \ No newline at end of file diff --git a/poetry.lock b/poetry.lock index 711b172..2789c64 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,190 +1,51 @@ -# This file is automatically @generated by Poetry 2.0.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. 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"89a1b631e4e2592439014665c600b724537f464c65ca1830059297dd8e1ce805" +content-hash = "0f7047786c25ce5d52e8bf2e3ee35f13423ac5f9a0510e333b472c1779e6e035" From 048743b10c1d0d7776f32a8b28c0e6544db0d0a8 Mon Sep 17 00:00:00 2001 From: Shelley Doljack Date: Thu, 30 Oct 2025 21:00:09 -0600 Subject: [PATCH 03/11] Updates imports for Airflow 3. --- folio_data_anonymization/dags/anonymize_data.py | 4 ++-- folio_data_anonymization/dags/select_tables.py | 5 +---- folio_data_anonymization/dags/truncate.py | 3 +-- folio_data_anonymization/plugins/anonymize.py | 2 +- folio_data_anonymization/plugins/select_tables.py | 3 +-- .../plugins/sql/select_faked_user.sql | 1 + folio_data_anonymization/plugins/sql_pool.py | 4 ++-- folio_data_anonymization/plugins/truncate/truncate.py | 3 +-- tests/test_utils.py | 8 ++++---- 9 files changed, 14 insertions(+), 19 deletions(-) create mode 100644 folio_data_anonymization/plugins/sql/select_faked_user.sql diff --git a/folio_data_anonymization/dags/anonymize_data.py b/folio_data_anonymization/dags/anonymize_data.py index afe35d1..5f13ee1 100644 --- a/folio_data_anonymization/dags/anonymize_data.py +++ b/folio_data_anonymization/dags/anonymize_data.py @@ -3,8 +3,8 @@ import logging from datetime import timedelta -from airflow.decorators import dag -from airflow.operators.empty import EmptyOperator +from airflow.sdk import dag +from airflow.providers.standard.operators.empty import EmptyOperator try: diff --git a/folio_data_anonymization/dags/select_tables.py b/folio_data_anonymization/dags/select_tables.py index 6554288..e40e405 100644 --- a/folio_data_anonymization/dags/select_tables.py +++ b/folio_data_anonymization/dags/select_tables.py @@ -4,10 +4,7 @@ from datetime import timedelta -from airflow import DAG -from airflow.decorators import task -from airflow.models.param import Param -from airflow.operators.python import get_current_context +from airflow.sdk import DAG, Param, get_current_context, task logger = logging.getLogger(__name__) diff --git a/folio_data_anonymization/dags/truncate.py b/folio_data_anonymization/dags/truncate.py index 714fd58..f96687e 100644 --- a/folio_data_anonymization/dags/truncate.py +++ b/folio_data_anonymization/dags/truncate.py @@ -1,7 +1,6 @@ from datetime import timedelta -from airflow import DAG -from airflow.decorators import task +from airflow.sdk import DAG, task try: from plugins.git_plugins.truncate.truncate import ( diff --git a/folio_data_anonymization/plugins/anonymize.py b/folio_data_anonymization/plugins/anonymize.py index e1f1ba4..d2b7f4b 100644 --- a/folio_data_anonymization/plugins/anonymize.py +++ b/folio_data_anonymization/plugins/anonymize.py @@ -1,6 +1,6 @@ import logging -from airflow.decorators import task +from airflow.sdk import task try: from plugins.git_plugins.utils import fake_jsonb, update_row diff --git a/folio_data_anonymization/plugins/select_tables.py b/folio_data_anonymization/plugins/select_tables.py index 3175a45..c4975eb 100644 --- a/folio_data_anonymization/plugins/select_tables.py +++ b/folio_data_anonymization/plugins/select_tables.py @@ -4,9 +4,8 @@ from psycopg2.extensions import AsIs from airflow.models import DagBag -from airflow.operators.python import get_current_context +from airflow.sdk import get_current_context, timezone from airflow.providers.common.sql.operators.sql import SQLExecuteQueryOperator -from airflow.utils import timezone from airflow.utils.state import State logger = logging.getLogger(__name__) diff --git a/folio_data_anonymization/plugins/sql/select_faked_user.sql b/folio_data_anonymization/plugins/sql/select_faked_user.sql new file mode 100644 index 0000000..fb32e8b --- /dev/null +++ b/folio_data_anonymization/plugins/sql/select_faked_user.sql @@ -0,0 +1 @@ +SELECT jsonb FROM %(schema_name)s WHERE id=%(uuid)s; \ No newline at end of file diff --git a/folio_data_anonymization/plugins/sql_pool.py b/folio_data_anonymization/plugins/sql_pool.py index 5c0a7f8..b1bad85 100644 --- a/folio_data_anonymization/plugins/sql_pool.py +++ b/folio_data_anonymization/plugins/sql_pool.py @@ -1,4 +1,4 @@ -from airflow.models import Connection, Variable +from airflow.sdk import Connection, Variable from psycopg2.pool import SimpleConnectionPool @@ -7,7 +7,7 @@ def __init__(self, **kwargs): self.conn = self.connection() def connection(self): - return Connection.get_connection_from_secrets('postgres_folio') + return Connection.get('postgres_folio') def pool(self): conn = self.conn diff --git a/folio_data_anonymization/plugins/truncate/truncate.py b/folio_data_anonymization/plugins/truncate/truncate.py index f043773..a4877f8 100644 --- a/folio_data_anonymization/plugins/truncate/truncate.py +++ b/folio_data_anonymization/plugins/truncate/truncate.py @@ -4,8 +4,7 @@ from pathlib import Path -from airflow.models import Variable -from airflow.operators.python import get_current_context +from airflow.sdk import get_current_context, Variable from airflow.providers.common.sql.operators.sql import SQLExecuteQueryOperator logger = logging.getLogger(__name__) diff --git a/tests/test_utils.py b/tests/test_utils.py index dd18fa1..c937272 100644 --- a/tests/test_utils.py +++ b/tests/test_utils.py @@ -8,7 +8,7 @@ from psycopg2 import Error from airflow.exceptions import AirflowFailException -from airflow.models import Connection +from airflow.sdk import Connection from folio_data_anonymization.plugins.utils import fake_jsonb, update_row @@ -44,7 +44,7 @@ def putconn(self): class MockAirflowConnection(pydantic.BaseModel): - def get_connection_from_secrets(self): + def get(self): return Connection( # noqa conn_id="postgres-folio", conn_type="postgres", @@ -122,7 +122,7 @@ def test_user_fake_jsonb(configs): def test_update_row(mocker, mock_airflow_connection): mocker.patch( - 'folio_data_anonymization.plugins.sql_pool.Connection.get_connection_from_secrets', # noqa + 'folio_data_anonymization.plugins.sql_pool.Connection.get', # noqa return_value=mock_airflow_connection, ) @@ -136,7 +136,7 @@ def test_update_row(mocker, mock_airflow_connection): def test_failed_update_row(mocker, mock_airflow_connection): mocker.patch( - 'folio_data_anonymization.plugins.sql_pool.Connection.get_connection_from_secrets', # noqa + 'folio_data_anonymization.plugins.sql_pool.Connection.get', # noqa return_value=mock_airflow_connection, ) From 970ec67122ef4aa2ed707a296809abf085336245 Mon Sep 17 00:00:00 2001 From: Shelley Doljack Date: Fri, 31 Oct 2025 17:15:23 -0600 Subject: [PATCH 04/11] Updates DAGs and tests for airflow 3. --- .../dags/select_tables.py | 103 ++++++++-------- folio_data_anonymization/dags/truncate.py | 20 +-- .../plugins/select_tables.py | 116 +++++++++--------- .../plugins/truncate/truncate.py | 7 +- tests/test_select_tables.py | 51 +++----- tests/test_truncate_tables.py | 4 +- 6 files changed, 142 insertions(+), 159 deletions(-) diff --git a/folio_data_anonymization/dags/select_tables.py b/folio_data_anonymization/dags/select_tables.py index e40e405..ec77d4f 100644 --- a/folio_data_anonymization/dags/select_tables.py +++ b/folio_data_anonymization/dags/select_tables.py @@ -1,10 +1,9 @@ import logging -import math import pathlib from datetime import timedelta -from airflow.sdk import DAG, Param, get_current_context, task +from airflow.sdk import dag, Param, get_current_context, task logger = logging.getLogger(__name__) @@ -23,13 +22,21 @@ try: from plugins.git_plugins.select_tables import ( - do_anonymize, + construct_anon_config, + combine_table_counts, + calculate_table_ranges, + fetch_records_batch_for_table, + trigger_anonymize_dag, fetch_record_counts_per_table, schemas_tables, ) except (ImportError, ModuleNotFoundError): from folio_data_anonymization.plugins.select_tables import ( - do_anonymize, + construct_anon_config, + combine_table_counts, + calculate_table_ranges, + fetch_records_batch_for_table, + trigger_anonymize_dag, fetch_record_counts_per_table, schemas_tables, ) @@ -56,8 +63,7 @@ def config_file_names() -> list: return config_names -with DAG( - "select_table_objects", +@dag( schedule=None, default_args=default_args, catchup=False, @@ -80,7 +86,8 @@ def config_file_names() -> list: type="string", ), }, -) as dag: +) +def select_table_objects(*args, **kwargs): @task def do_batch_size() -> int: @@ -115,41 +122,44 @@ def record_counts_per_table(schema_table) -> int: return fetch_record_counts_per_table(schema=schema_table) @task - def combine_table_counts(**kwargs) -> dict: - totals = kwargs["record_counts_per_table"] - tables = kwargs["schema_table"] - list_totals = list(totals) - - return dict(zip(tables, list_totals)) + def record_counts(batch_size, schemas_tables, total_records_per_table) -> dict: + return combine_table_counts( + number_in_batch=batch_size, + schema_table=schemas_tables, + record_counts_per_table=total_records_per_table, + ) @task - def calculate_table_ranges(**kwargs) -> list: - output = [] - counts = kwargs["counts"] - batch_size = kwargs["batch_size"] - tables = kwargs["schemas_tables"] - - for table in tables: - payload = {} - payload["table"] = table - payload["ranges"] = [] - records_in_table = counts[table] - div = math.ceil(int(records_in_table) / int(batch_size)) - step = math.ceil(records_in_table / div) - for i in range(0, records_in_table, step): - payload["ranges"].append((i, i + step)) - - output.append(payload) - - return output + def table_ranges() -> list: + return calculate_table_ranges( + batch_size=batch_size, + schemas_tables=schemas_tables, + counts=record_counts, + ) @task - def anonymize_batches(table_ranges, configuration) -> None: + def anonymize_batches(*args, **kwargs): + """ + Creates batches to anonymize from list item of calculate_table_ranges + { + 'table': 'diku_mod_organizations_storage.contacts', + 'ranges': [(0, 38)] + } + """ context = get_current_context() params = context.get("params", {}) # type: ignore tenant_id = params["tenant_id"] - - do_anonymize(table_ranges, configuration, tenant_id) + table = kwargs["table_ranges"]["table"] + logger.info(f"TABLE: {table}") + config = construct_anon_config(kwargs["config"], table) + logger.info(f"CONFIG: {config}") + for range in kwargs["table_ranges"]["ranges"]: + offset = range[0] + limit = range[1] - offset + + data = fetch_records_batch_for_table(table, offset, limit) + dag_run = trigger_anonymize_dag(data, config, tenant_id) + dag_run.execute(context) batch_size = do_batch_size() @@ -161,26 +171,11 @@ def anonymize_batches(table_ranges, configuration) -> None: schema_table=schemas_tables_selected ) - record_counts = combine_table_counts( - number_in_batch=batch_size, - schema_table=schemas_tables_selected, - record_counts_per_table=total_records_per_table, - ) + counts = record_counts(batch_size, schemas_tables_selected, total_records_per_table) - table_ranges = calculate_table_ranges( - batch_size=batch_size, - schemas_tables=schemas_tables_selected, - counts=record_counts, - ) + table_ranges(batch_size, schemas_tables_selected, counts) - anonymize = anonymize_batches(table_ranges, configuration) + anonymize_batches.expand(table_ranges=table_ranges, config=configuration) -( - configuration - >> schemas_tables_selected - >> total_records_per_table - >> record_counts - >> table_ranges - >> anonymize -) +select_table_objects() diff --git a/folio_data_anonymization/dags/truncate.py b/folio_data_anonymization/dags/truncate.py index f96687e..19d4ee0 100644 --- a/folio_data_anonymization/dags/truncate.py +++ b/folio_data_anonymization/dags/truncate.py @@ -1,6 +1,6 @@ from datetime import timedelta -from airflow.sdk import DAG, task +from airflow.sdk import dag, task, Param try: from plugins.git_plugins.truncate.truncate import ( @@ -22,14 +22,20 @@ "retry_delay": timedelta(minutes=1), } -with DAG( - "truncate_tables", +@dag( schedule=None, default_args=default_args, catchup=False, tags=["truncate"], - params={}, -) as dag: + params={ + "tenant_id": Param( + "diku", + description="Tenant ID", + type="string", + ), + }, +) +def truncate_tables(): @task def fetch_schemas_tables(): @@ -41,7 +47,7 @@ def truncate_schemas_tables(schemas_tables): schemas_tables = fetch_schemas_tables() - truncate_database_objects = truncate_schemas_tables(schemas_tables) + truncate_schemas_tables(schemas_tables) -(schemas_tables >> truncate_database_objects) +truncate_tables() diff --git a/folio_data_anonymization/plugins/select_tables.py b/folio_data_anonymization/plugins/select_tables.py index c4975eb..36572cf 100644 --- a/folio_data_anonymization/plugins/select_tables.py +++ b/folio_data_anonymization/plugins/select_tables.py @@ -1,12 +1,12 @@ import logging +import math from pathlib import Path from psycopg2.extensions import AsIs -from airflow.models import DagBag -from airflow.sdk import get_current_context, timezone +from airflow.providers.standard.operators.trigger_dagrun import TriggerDagRunOperator +from airflow.sdk import get_current_context from airflow.providers.common.sql.operators.sql import SQLExecuteQueryOperator -from airflow.utils.state import State logger = logging.getLogger(__name__) @@ -20,6 +20,35 @@ def schemas_tables(config, tenant_id) -> list: return schemas_tables +def combine_table_counts(**kwargs) -> dict: + totals = kwargs["record_counts_per_table"] + tables = kwargs["schema_table"] + list_totals = list(totals) + + return dict(zip(tables, list_totals)) + + +def calculate_table_ranges(**kwargs) -> list: + output = [] + counts = kwargs["counts"] + batch_size = kwargs["batch_size"] + tables = kwargs["schemas_tables"] + + for table in tables: + payload = {} + payload["table"] = table + payload["ranges"] = [] + records_in_table = counts[table] + div = math.ceil(int(records_in_table) / int(batch_size)) + step = math.ceil(records_in_table / div) + for i in range(0, records_in_table, step): + payload["ranges"].append((i, i + step)) + + output.append(payload) + + return output + + def fetch_record_counts_per_table(**kwargs) -> int: context = get_current_context() schema_table = kwargs.get("schema", "") @@ -51,6 +80,10 @@ def sql_count_file() -> Path: def fetch_records_batch_for_table(table, offset, limit, **kwargs) -> list: context = get_current_context() + logger.info( + f"Selecting records batch for table: {table}, offset: {offset}, limit: {limit}" + ) + with open(sql_selections_file()) as sqv: query = sqv.read() @@ -77,66 +110,29 @@ def sql_selections_file() -> Path: return sql_path -def do_anonymize(tables_and_ranges, configuration, tenant_id) -> None: +def trigger_anonymize_dag(data, config, tenant_id) -> TriggerDagRunOperator: """ - [ - { - 'table': 'diku_mod_organizations_storage.contacts', - 'ranges': [(0, 38)] - }, - { - 'table': 'diku_mod_organizations_storage.interface_credentials', - 'ranges': [(0, 74)] - }, - { - 'table': 'diku_mod_organizations_storage.interfaces', - 'ranges': [(0, 76)] - }, - { - 'table': 'diku_mod_organizations_storage.organizations', - 'ranges': [(0, 100), (100, 200), .. (2400, 2500), (2500, 2600)] - } - ] + Triggers anonymize_data DAG with data, anonymize config, and tenant ID + { + 'table': 'diku_mod_organizations_storage.contacts', + 'ranges': [(0, 38)] + } """ + trigger_dag = TriggerDagRunOperator( + task_id="trigger_anonymize_data_dag", + trigger_dag_id="anonymize_data", + conf={ + "tenant": tenant_id, + "table_config": config, + "data": data, + }, + ) + logger.info(f"Triggered anonymize_data DAG for {config['table_name']}") + + return trigger_dag + - for table_ranges in tables_and_ranges: - table = table_ranges["table"] - logger.info(f"TABLE: {table}") - config = constuct_anon_config(configuration, table) - - logger.info(f"CONFIG: {config}") - for range in table_ranges["ranges"]: - offset = range[0] - limit = range[1] - offset - - logger.info( - f"Selecting records batch for table: {table}, \ - offset: {offset}, limit {limit}" - ) - data = fetch_records_batch_for_table(table, offset, limit) - execution_date = timezone.utcnow() - - dagbag = DagBag("/opt/bitnami/airflow/dags/git_dags") - dag = dagbag.get_dag("anonymize_data") - dag_run_id = f"manual__{execution_date.isoformat()}" - - dag.create_dagrun( - run_id=dag_run_id, - execution_date=execution_date, - state=State.QUEUED, - conf={ - "tenant": tenant_id, - "table_config": config, - "data": data, - }, - external_trigger=True, - ) - logger.info(f"Anonymizing {table} with OFFSET: {offset} LIMIT: {limit};") - - return None - - -def constuct_anon_config(configuration, table) -> dict: +def construct_anon_config(configuration, table) -> dict: config: dict = {} table_no_tenant = table.split('_', 1)[1] conf_key = list(configuration.keys())[0] diff --git a/folio_data_anonymization/plugins/truncate/truncate.py b/folio_data_anonymization/plugins/truncate/truncate.py index a4877f8..05bdeb3 100644 --- a/folio_data_anonymization/plugins/truncate/truncate.py +++ b/folio_data_anonymization/plugins/truncate/truncate.py @@ -4,17 +4,18 @@ from pathlib import Path -from airflow.sdk import get_current_context, Variable +from airflow.sdk import get_current_context from airflow.providers.common.sql.operators.sql import SQLExecuteQueryOperator logger = logging.getLogger(__name__) -def tables_list(): +def tables_list(**kwargs): with open(tables_json_file(), 'r') as file: json_list = json.load(file) - tenant_id = Variable.get("TENANT_ID", "diku") + params = kwargs.get("params", {}) + tenant_id = params.get("tenant_id", "diku") tenant_json_list = [f"{tenant_id}_" + item for item in json_list] return ','.join(tenant_json_list) diff --git a/tests/test_select_tables.py b/tests/test_select_tables.py index 36a6902..8b5e715 100644 --- a/tests/test_select_tables.py +++ b/tests/test_select_tables.py @@ -1,13 +1,12 @@ import pydantic import pytest -from folio_data_anonymization.dags.select_tables import ( +from folio_data_anonymization.plugins.select_tables import ( calculate_table_ranges, combine_table_counts, -) - -from folio_data_anonymization.plugins.select_tables import ( - do_anonymize, + construct_anon_config, + fetch_records_batch_for_table, + trigger_anonymize_dag, fetch_record_counts_per_table, schemas_tables, ) @@ -67,16 +66,6 @@ def config(): } -@pytest.fixture -def mock_dag_bag(mocker): - def mock_get_dag(dag_id: str): - return mocker.MagicMock() - - dag_bag = mocker.MagicMock() - dag_bag.get_dag = mock_get_dag - return dag_bag - - def test_fetch_record_counts(mocker, mock_get_current_context, config): mocker.patch( 'folio_data_anonymization.plugins.select_tables.SQLExecuteQueryOperator', @@ -92,9 +81,7 @@ def test_fetch_record_counts(mocker, mock_get_current_context, config): assert count == 76 -def test_anonymize_selections( - mocker, mock_get_current_context, mock_dag_bag, config, caplog -): +def test_anonymize_selections(mocker, mock_get_current_context, config, caplog): mocker.patch( 'folio_data_anonymization.plugins.select_tables.SQLExecuteQueryOperator', return_value=MockSQLExecuteQueryOperator(result_type="selections"), @@ -103,31 +90,29 @@ def test_anonymize_selections( 'folio_data_anonymization.plugins.select_tables.sql_selections_file', return_value='folio_data_anonymization/plugins/sql/selections.sql', ) - dag_bag = mocker.patch( - "folio_data_anonymization.plugins.select_tables.DagBag", - return_value=mock_dag_bag, - ) tables = schemas_tables(config, "diku") assert "diku_mod_table_c.three" in tables - counts = combine_table_counts.function( + counts = combine_table_counts( schema_table=tables, record_counts_per_table=[38, 74, 76] ) assert counts["diku_mod_table_a.one"] == 38 - ranges = calculate_table_ranges.function( - batch_size=10, counts=counts, schemas_tables=tables - ) + ranges = calculate_table_ranges(batch_size=10, counts=counts, schemas_tables=tables) assert ranges[0]["table"] == "diku_mod_table_a.one" assert ranges[0]["ranges"][0] == (0, 10) assert ranges[0]["ranges"][3] == (30, 40) - do_anonymize(ranges, config, "diku") - assert ("Selecting records batch") in caplog.text - assert dag_bag.called - assert ("Anonymizing diku_mod_table_a.one with OFFSET: 0 LIMIT: 10") in caplog.text - assert ( - "{'table_name': 'diku_mod_table_c.three', 'anonymize': {'jsonb': []}, 'set_to_empty': {'jsonb': []}}" # noqa - ) in caplog.text + for ranges_li in ranges: + table = ranges_li["table"] + table_config = construct_anon_config(config, table) + data = fetch_records_batch_for_table(table, 0, 10) + operator = trigger_anonymize_dag(data, table_config, "diku") + assert operator.trigger_dag_id == "anonymize_data" + assert operator.task_id == "trigger_anonymize_data_dag" + assert ( + "Selecting records batch for table: diku_mod_table_a.one, offset: 0, limit: 10" # noqa + ) in caplog.text + assert ("Triggered anonymize_data DAG for diku_mod_table_a.one") in caplog.text diff --git a/tests/test_truncate_tables.py b/tests/test_truncate_tables.py index f8aaba2..a531b5e 100644 --- a/tests/test_truncate_tables.py +++ b/tests/test_truncate_tables.py @@ -51,10 +51,10 @@ def setup_tests(mocker): def test_truncate_tables(mocker, mock_get_current_context, caplog): setup_tests(mocker) - tables = tables_list() + tables = tables_list(params={"tenant_id": "sul"}) results = truncate_db_objects(schemas_tables=tables) assert ( - "Will truncate diku_mod_schema_one.table,diku_mod_schema_two.table,diku_mod_schema_tree.table" # noqa + "Will truncate sul_mod_schema_one.table,sul_mod_schema_two.table,sul_mod_schema_tree.table" # noqa in caplog.text ) assert "TRUNCATE" in results From c97353b01390641373519153b702a8702203f8a8 Mon Sep 17 00:00:00 2001 From: Shelley Doljack Date: Fri, 31 Oct 2025 17:53:17 -0600 Subject: [PATCH 05/11] Fixes linting error. --- folio_data_anonymization/dags/truncate.py | 1 + 1 file changed, 1 insertion(+) diff --git a/folio_data_anonymization/dags/truncate.py b/folio_data_anonymization/dags/truncate.py index 19d4ee0..34e39e7 100644 --- a/folio_data_anonymization/dags/truncate.py +++ b/folio_data_anonymization/dags/truncate.py @@ -22,6 +22,7 @@ "retry_delay": timedelta(minutes=1), } + @dag( schedule=None, default_args=default_args, From d78fed2c5c6cfcc616f8f06cdbd859784b8b4795 Mon Sep 17 00:00:00 2001 From: Shelley Doljack Date: Fri, 31 Oct 2025 17:56:10 -0600 Subject: [PATCH 06/11] Removes sql file inadvertently committed. --- folio_data_anonymization/plugins/sql/select_faked_user.sql | 1 - 1 file changed, 1 deletion(-) delete mode 100644 folio_data_anonymization/plugins/sql/select_faked_user.sql diff --git a/folio_data_anonymization/plugins/sql/select_faked_user.sql b/folio_data_anonymization/plugins/sql/select_faked_user.sql deleted file mode 100644 index fb32e8b..0000000 --- a/folio_data_anonymization/plugins/sql/select_faked_user.sql +++ /dev/null @@ -1 +0,0 @@ -SELECT jsonb FROM %(schema_name)s WHERE id=%(uuid)s; \ No newline at end of file From 6ac8aae9d614c913f5a71a6955c7c3fec6343568 Mon Sep 17 00:00:00 2001 From: Shelley Doljack Date: Mon, 3 Nov 2025 10:53:19 -0700 Subject: [PATCH 07/11] Fixes expected arguments for table_ranges task. --- folio_data_anonymization/dags/select_tables.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/folio_data_anonymization/dags/select_tables.py b/folio_data_anonymization/dags/select_tables.py index ec77d4f..cde9e49 100644 --- a/folio_data_anonymization/dags/select_tables.py +++ b/folio_data_anonymization/dags/select_tables.py @@ -130,7 +130,7 @@ def record_counts(batch_size, schemas_tables, total_records_per_table) -> dict: ) @task - def table_ranges() -> list: + def table_ranges(*args) -> list: return calculate_table_ranges( batch_size=batch_size, schemas_tables=schemas_tables, From 71d7abf384bc5348d5f3d1a3a0c619514cd9f585 Mon Sep 17 00:00:00 2001 From: Shelley Doljack Date: Mon, 3 Nov 2025 16:16:53 -0700 Subject: [PATCH 08/11] Changes Variable import and tests for SQLPool maxconn. --- folio_data_anonymization/plugins/sql_pool.py | 11 ++-- tests/test_anonymize_data_dag.py | 59 ++++++++++++++++++++ 2 files changed, 66 insertions(+), 4 deletions(-) diff --git a/folio_data_anonymization/plugins/sql_pool.py b/folio_data_anonymization/plugins/sql_pool.py index b1bad85..5351d7f 100644 --- a/folio_data_anonymization/plugins/sql_pool.py +++ b/folio_data_anonymization/plugins/sql_pool.py @@ -1,6 +1,7 @@ -from airflow.sdk import Connection, Variable +from airflow.sdk import Connection +from airflow.models import Variable from psycopg2.pool import SimpleConnectionPool - +import logging class SQLPool: def __init__(self, **kwargs): @@ -9,11 +10,13 @@ def __init__(self, **kwargs): def connection(self): return Connection.get('postgres_folio') - def pool(self): + def pool(self, **kwargs): conn = self.conn + max_pool_size = Variable.get("max_pool_size", 48) + logging.getLogger(__name__).info(f"SQL max pool size: {max_pool_size}") return SimpleConnectionPool( 12, - Variable.get('folio_sql_max_pool_size', 48), + max_pool_size, database='okapi', host=conn.host, password=conn.password, diff --git a/tests/test_anonymize_data_dag.py b/tests/test_anonymize_data_dag.py index 1ca8e99..24d1574 100644 --- a/tests/test_anonymize_data_dag.py +++ b/tests/test_anonymize_data_dag.py @@ -2,13 +2,19 @@ import pathlib import pydantic import pytest +from unittest.mock import MagicMock +from airflow.sdk import Connection +from airflow.models import Variable from folio_data_anonymization.plugins.anonymize import ( anonymize_payload, anonymize_row_update_table, payload_tuples, ) +from folio_data_anonymization.plugins.sql_pool import ( + SQLPool, +) class MockCursor(pydantic.BaseModel): @@ -33,6 +39,39 @@ def putconn(self, conn): return True +@pytest.fixture +def psycopg2_conn(mocker): + mock_conn = mocker.patch("psycopg2.connect") + mock_conn.connect.return_value = MagicMock() + return mock_conn + + +@pytest.fixture +def mock_sqlpool_variable(monkeypatch): + def mock_get(key, *args): + value = None + match key: + case "max_pool_size": + value = 16 + case _: + raise ValueError("") + return value + + monkeypatch.setattr(Variable, "get", mock_get) + + +@pytest.fixture +def mock_postgres_connection(): + return Connection( + conn_id="postgres_folio", + conn_type="postgres", + host="postgresdb.example.com", + login="admin", + password="admin123", + port=5432, + ) + + @pytest.fixture def mock_data() -> list: with (pathlib.Path(__file__).parent / "fixtures/user.json").open() as fo: @@ -60,6 +99,26 @@ def mock_dag_run(mocker, configs, mock_data): return dag_run +def test_connection_pool( + mocker, mock_postgres_connection, psycopg2_conn, mock_sqlpool_variable, caplog +): + mocker.patch( + "folio_data_anonymization.plugins.sql_pool.Connection", + return_value=mock_postgres_connection, + ) + mocker.patch( + "folio_data_anonymization.plugins.sql_pool.SQLPool.connection", + return_value=mock_postgres_connection, + ) + mocker.patch( + "folio_data_anonymization.plugins.sql_pool.SQLPool", return_value=psycopg2_conn + ) + connection_pool = SQLPool().pool() + assert "SQL max pool size: 16" in caplog.text + assert connection_pool.minconn == 12 + assert connection_pool.maxconn == 16 + + def test_anonymize(mocker, mock_dag_run, caplog): mocker.patch('folio_data_anonymization.plugins.utils.update_row', return_value=True) payload = anonymize_payload.function(params=mock_dag_run.conf) From 48b57b2d6311bae3017fe4f2ab60cb85dce82a62 Mon Sep 17 00:00:00 2001 From: Shelley Doljack Date: Mon, 3 Nov 2025 17:02:21 -0700 Subject: [PATCH 09/11] Fixes linting error. --- folio_data_anonymization/plugins/sql_pool.py | 1 + 1 file changed, 1 insertion(+) diff --git a/folio_data_anonymization/plugins/sql_pool.py b/folio_data_anonymization/plugins/sql_pool.py index 5351d7f..6a05e64 100644 --- a/folio_data_anonymization/plugins/sql_pool.py +++ b/folio_data_anonymization/plugins/sql_pool.py @@ -3,6 +3,7 @@ from psycopg2.pool import SimpleConnectionPool import logging + class SQLPool: def __init__(self, **kwargs): self.conn = self.connection() From 617955afd66242b7e64b9c25f5c869ca1d994a33 Mon Sep 17 00:00:00 2001 From: Shelley Doljack Date: Mon, 3 Nov 2025 20:15:21 -0700 Subject: [PATCH 10/11] Removes kwargs from SQLPool().pool(). --- folio_data_anonymization/plugins/sql_pool.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/folio_data_anonymization/plugins/sql_pool.py b/folio_data_anonymization/plugins/sql_pool.py index 6a05e64..916f7cb 100644 --- a/folio_data_anonymization/plugins/sql_pool.py +++ b/folio_data_anonymization/plugins/sql_pool.py @@ -11,7 +11,7 @@ def __init__(self, **kwargs): def connection(self): return Connection.get('postgres_folio') - def pool(self, **kwargs): + def pool(self): conn = self.conn max_pool_size = Variable.get("max_pool_size", 48) logging.getLogger(__name__).info(f"SQL max pool size: {max_pool_size}") From df11fdda21901e57f2f357296fb762839b830850 Mon Sep 17 00:00:00 2001 From: Shelley Doljack Date: Tue, 4 Nov 2025 10:06:31 -0700 Subject: [PATCH 11/11] Casts max_pool_size as int for SimpleConnectionPool. --- folio_data_anonymization/plugins/sql_pool.py | 4 ++-- tests/test_anonymize_data_dag.py | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/folio_data_anonymization/plugins/sql_pool.py b/folio_data_anonymization/plugins/sql_pool.py index 916f7cb..f8eb798 100644 --- a/folio_data_anonymization/plugins/sql_pool.py +++ b/folio_data_anonymization/plugins/sql_pool.py @@ -13,11 +13,11 @@ def connection(self): def pool(self): conn = self.conn - max_pool_size = Variable.get("max_pool_size", 48) + max_pool_size = Variable.get("max_pool_size", "48") logging.getLogger(__name__).info(f"SQL max pool size: {max_pool_size}") return SimpleConnectionPool( 12, - max_pool_size, + int(max_pool_size), database='okapi', host=conn.host, password=conn.password, diff --git a/tests/test_anonymize_data_dag.py b/tests/test_anonymize_data_dag.py index 24d1574..f05793e 100644 --- a/tests/test_anonymize_data_dag.py +++ b/tests/test_anonymize_data_dag.py @@ -52,7 +52,7 @@ def mock_get(key, *args): value = None match key: case "max_pool_size": - value = 16 + value = "16" case _: raise ValueError("") return value