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DistanceMetrics.fs
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683 lines (630 loc) · 32.1 KB
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module DistanceMetricsTests
open Expecto
open FSharp.Stats
open FSharp.Stats.DistanceMetrics.Vector
open FsMath
open FSharp.Stats.DistanceMetrics
[<Tests>]
let hammingfunctiontests =
testList "DistanceMetrics.hamming" [
testCase "hamming" <| fun () ->
let seq1 = seq {0;0;0;0}
let seq2 = seq {1;1;1;1}
let distance = hamming seq1 seq2
Expect.equal distance 4 "Should be equal"
testCase "hamming0" <| fun () ->
let seq1 = seq {0.0;0.0;0.0;0.0}
let seq2 = seq {0.0;0.0;0.0;0.0}
let distance = hamming seq1 seq2
Expect.equal distance 0 "Should be equal"
testCase "hamminginfinity" <| fun () ->
let seq1 = seq {infinity;-infinity}
let seq2 = seq {infinity;-infinity}
let distance = hamming seq1 seq2
Expect.equal distance 0 "Should be equal"
testCase "hammingcharacters" <| fun () ->
let seq1 = seq {"a";"b";"c"}
let seq2 = seq {"a";"b";"c"}
let distance = hamming seq1 seq2
Expect.equal distance 0 "Should be equal"
testCase "hamminglists" <| fun () ->
let l1 = [1.0;2.0]
let l2 = [1.0;3.0]
let distance = hamming l1 l2
Expect.equal distance 1 "Should be equal"
testCase "hammingstrings" <| fun () ->
let s1 = "karolin"
let s2 = "kathrin"
let distance = hamming s1 s2
Expect.equal distance 3 "Should be equal"
testCase "hammingexception" <| fun () ->
let seq1 = seq {0}
let seq2 = seq {1;1}
Expect.throws (fun () -> hamming seq1 seq2 |> ignore) "Should throw"
]
[<Tests>]
let hammingvecfunctiontests =
testList "DistanceMetrics.hammingvector" [
testCase "hamming" <| fun () ->
let v1 = vector [0;0;0;0]
let v2 = vector [1;1;1;1]
let distance = Vector.hamming v1 v2
Expect.equal distance 4 "Should be equal"
testCase "hamming0" <| fun () ->
let v1 = vector [0.0;0.0;0.0;0.0]
let v2 = vector [0.0;0.0;0.0;0.0]
let distance = Vector.hamming v1 v2
Expect.equal distance 0 "Should be equal"
testCase "hamminginfinity" <| fun () ->
let v1 = vector [infinity;-infinity]
let v2 = vector [infinity;-infinity]
let distance = Vector.hamming v1 v2
Expect.equal distance 0 "Should be equal"
testCase "hammingexception" <| fun () ->
let v1 = vector [0]
let v2 = vector [1;1]
Expect.throws (fun () -> Vector.hamming v1 v2 |> ignore) "Should throw"
]
[<Tests>]
let hammingarrayfunctiontests =
testList "DistanceMetrics.hammingarray" [
testCase "hamming" <| fun () ->
let a1 = [|0;0;0;0|]
let a2 = [|1;1;1;1|]
let distance = Array.hamming a1 a2
Expect.equal distance 4 "Should be equal"
testCase "hamming0" <| fun () ->
let a1 = [|0.0;0.0;0.0;0.0|]
let a2 = [|0.0;0.0;0.0;0.0|]
let distance = Array.hamming a1 a2
Expect.equal distance 0 "Should be equal"
testCase "hamminginfinity" <| fun () ->
let a1 = [|infinity;-infinity|]
let a2 = [|infinity;-infinity|]
let distance = Array.hamming a1 a2
Expect.equal distance 0 "Should be equal"
testCase "hammingcharacters" <| fun () ->
let a1 = [|"a";"b";"c"|]
let a2 = [|"a";"b";"c"|]
let distance = Array.hamming a1 a2
Expect.equal distance 0 "Should be equal"
testCase "hammingexception" <| fun () ->
let a1 = [|0|]
let a2 = [|1;1|]
Expect.throws (fun () -> Array.hamming a1 a2 |> ignore) "Should throw"
]
[<Tests>]
let euclidianseqfunctiontests =
testList "DistanceMetrics.euclidiansequence" [
testCase "euclidian" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; 10000.0}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = euclidean seq1 seq2
Expect.floatClose Accuracy.high distance 9999.0034 "Should be equal"
testCase "euclidianinf" <| fun () ->
let seq1 = seq {0.001; -2.0; -infinity; infinity}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = euclidean seq1 seq2
Expect.equal distance infinity "Should be equal"
testCase "euclidian0" <| fun () ->
let seq1 = seq {0.0; 0.0; 0.0; 0.0}
let seq2 = seq {0.0;0.0;0.0;0.0}
let distance = euclidean seq1 seq2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "euclidiannan" <| fun () ->
let seq1 = seq {00.001; -2.0; 0.0; nan}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = euclidean seq1 seq2
Expect.isTrue (nan.Equals(distance)) "Distance should be NaN"
testCase "euclidianNaN" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; 10000.0}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = euclideanNaN seq1 seq2
Expect.floatClose Accuracy.high distance 9999.0034 "Should be equal"
testCase "euclidianNaNinf" <| fun () ->
let seq1 = seq {0.001; -2.0; -infinity; infinity}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = euclideanNaN seq1 seq2
Expect.equal distance infinity "Should be equal"
testCase "euclidianNaN0" <| fun () ->
let seq1 = seq {0.0; 0.0; 0.0; 0.0}
let seq2 = seq {0.0;0.0;0.0;0.0}
let distance = euclideanNaN seq1 seq2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "euclidianNaNnan" <| fun () ->
let seq1 = seq {00.001; -2.0; 0.0; nan}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = euclideanNaN seq1 seq2
Expect.floatClose Accuracy.high distance 8.245968773 "Should be equal"
testCase "euclidianNaNsqrt" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; 10000.0}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = euclideanNaNSquared seq1 seq2
Expect.floatClose Accuracy.high distance 99980069 "Should be equal"
testCase "euclidianNaNsqrtinf" <| fun () ->
let seq1 = seq {0.001; -2.0; -infinity; infinity}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = euclideanNaNSquared seq1 seq2
Expect.equal distance infinity "Should be equal"
testCase "euclidianNaNsqrt0" <| fun () ->
let seq1 = seq {0.0; 0.0; 0.0; 0.0}
let seq2 = seq {0.0;0.0;0.0;0.0}
let distance = euclideanNaNSquared seq1 seq2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "euclidianNaNsqrtnan" <| fun () ->
let seq1 = seq {00.001; -2.0; 0.0; nan}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = euclideanNaNSquared seq1 seq2
Expect.floatClose Accuracy.high distance 67.996001 "Should be equal"
]
[<Tests>]
let euclidianvecfunctiontests =
testList "DistanceMetrics.euclidianvector" [
testCase "euclidian" <| fun () ->
let v1 = vector [0.001; -2.0; 0.0; 10000.0]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = Vector.euclidean v1 v2
Expect.floatClose Accuracy.high distance 9999.0034 "Should be equal"
testCase "euclidianinf" <| fun () ->
let v1 = vector [0.001; -2.0; -infinity; infinity]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = Vector.euclidean v1 v2
Expect.equal distance infinity "Should be equal"
testCase "euclidian0" <| fun () ->
let v1 = vector [0.0; 0.0; 0.0; 0.0]
let v2 = vector [0.0;0.0;0.0;0.0]
let distance = Vector.euclidean v1 v2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "euclidiannan" <| fun () ->
let v1 = vector [00.001; -2.0; 0.0; nan]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = Vector.euclidean v1 v2
Expect.isTrue (nan.Equals(distance)) "Distance should be NaN"
testCase "euclidiansqrt" <| fun () ->
let v1 = vector [0.001; -2.0; 0.0; 10000.0]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = euclideanSquared v1 v2
Expect.floatClose Accuracy.high distance 99980069 "Should be equal"
testCase "euclidiansqrtinf" <| fun () ->
let v1 = vector [0.001; -2.0; -infinity; infinity]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = euclideanSquared v1 v2
Expect.equal distance infinity "Should be equal"
testCase "euclidiansqrt0" <| fun () ->
let v1 = vector [0.0; 0.0; 0.0; 0.0]
let v2 = vector [0.0;0.0;0.0;0.0]
let distance = euclideanSquared v1 v2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "euclidiansqrtnan" <| fun () ->
let v1 = vector [00.001; -2.0; 0.0; nan]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = euclideanSquared v1 v2
Expect.isTrue (nan.Equals(distance)) "Distance should be NaN"
testCase "euclidianNaN" <| fun () ->
let v1 = vector [0.001; -2.0; 0.0; 10000.0]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = Vector.euclideanNaN v1 v2
Expect.floatClose Accuracy.high distance 9999.0034 "Should be equal"
testCase "euclidianNaNinf" <| fun () ->
let v1 = vector [0.001; -2.0; -infinity; infinity]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = Vector.euclideanNaN v1 v2
Expect.equal distance infinity "Should be equal"
testCase "euclidianNaN0" <| fun () ->
let v1 = vector [0.0; 0.0; 0.0; 0.0]
let v2 = vector [0.0;0.0;0.0;0.0]
let distance = Vector.euclideanNaN v1 v2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "euclidianNaNnan" <| fun () ->
let v1 = vector [00.001; -2.0; 0.0; nan]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = Vector.euclideanNaN v1 v2
Expect.floatClose Accuracy.high distance 8.245968773 "Should be equal"
]
[<Tests>]
let euclidianarrayfunctiontests =
testList "DistanceMetrics.euclidianarray" [
testCase "euclidian" <| fun () ->
let a1 = [|0.001; -2.0; 0.0; 10000.0|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = euclidean a1 a2
Expect.floatClose Accuracy.high distance 9999.0034 "Should be equal"
testCase "euclidianinf" <| fun () ->
let a1 = [|0.001; -2.0; -infinity; infinity|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = euclidean a1 a2
Expect.equal distance infinity "Should be equal"
testCase "euclidian0" <| fun () ->
let a1 = [|0.0; 0.0; 0.0; 0.0|]
let a2 = [|0.0;0.0;0.0;0.0|]
let distance = euclidean a1 a2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "euclidiannan" <| fun () ->
let a1 = [|00.001; -2.0; 0.0; nan|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = euclidean a1 a2
Expect.isTrue (nan.Equals(distance)) "Distance should be NaN"
testCase "euclidianNaNsqrt" <| fun () ->
let a1 = [|0.001; -2.0; 0.0; 10000.0|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = euclideanNaNSquared a1 a2
Expect.floatClose Accuracy.high distance 99980069 "Should be equal"
testCase "euclidianNaNsqrtinf" <| fun () ->
let a1 = [|0.001; -2.0; -infinity; infinity|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = euclideanNaNSquared a1 a2
Expect.equal distance infinity "Should be equal"
testCase "euclidianNaNsqrt0" <| fun () ->
let a1 = [|0.0; 0.0; 0.0; 0.0|]
let a2 = [|0.0;0.0;0.0;0.0|]
let distance = euclideanNaNSquared a1 a2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "euclidianNaNsqrtnan" <| fun () ->
let a1 = [|00.001; -2.0; 0.0; nan|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = euclideanNaNSquared a1 a2
Expect.floatClose Accuracy.high distance 67.996001 "Should be equal"
testCase "euclidianNaN" <| fun () ->
let a1 = [|0.001; -2.0; 0.0; 10000.0|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = euclideanNaN a1 a2
Expect.floatClose Accuracy.high distance 9999.0034 "Should be equal"
testCase "euclidianNaNinf" <| fun () ->
let a1 = [|0.001; -2.0; -infinity; infinity|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = euclideanNaN a1 a2
Expect.equal distance infinity "Should be equal"
testCase "euclidianNaN0" <| fun () ->
let a1 = [|0.0; 0.0; 0.0; 0.0|]
let a2 = [|0.0;0.0;0.0;0.0|]
let distance = euclideanNaN a1 a2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "euclidianNaNnan" <| fun () ->
let a1 = [|00.001; -2.0; 0.0; nan|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = euclideanNaN a1 a2
Expect.floatClose Accuracy.high distance 8.245968773 "Should be equal"
]
[<Tests>]
let cityblockseqfunctiontests =
testList "DistanceMetrics.cityblockseq" [
testCase "cityblock" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; 10000.0}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = cityblock seq1 seq2
Expect.floatClose Accuracy.high distance 10008.999 "Should be equal"
testCase "cityblockinf" <| fun () ->
let seq1 = seq {0.001; -2.0; -infinity; infinity}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = cityblock seq1 seq2
Expect.equal distance infinity "Should be equal"
testCase "cityblock0" <| fun () ->
let seq1 = seq {0.0; 0.0; 0.0; 0.0}
let seq2 = seq {0.0;0.0;0.0;0.0}
let distance = cityblock seq1 seq2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "cityblocknan" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; nan}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = cityblock seq1 seq2
Expect.isTrue (nan.Equals(distance)) "Distance should be NaN"
testCase "cityblockNaN" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; 10000.0}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = cityblockNaN seq1 seq2
Expect.floatClose Accuracy.high distance 10008.999 "Should be equal"
testCase "cityblockNaNinf" <| fun () ->
let seq1 = seq {0.001; -2.0; -infinity; infinity}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = cityblockNaN seq1 seq2
Expect.equal distance infinity "Should be equal"
testCase "cityblockNaN0" <| fun () ->
let seq1 = seq {0.0; 0.0; 0.0; 0.0}
let seq2 = seq {0.0;0.0;0.0;0.0}
let distance = cityblockNaN seq1 seq2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "cityblockNaNnan" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; nan}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = cityblockNaN seq1 seq2
Expect.floatClose Accuracy.high distance 9.999 "Should be equal"
]
[<Tests>]
let cityblockvectorfunctiontests =
testList "DistanceMetrics.cityblockvector" [
testCase "cityblock" <| fun () ->
let v1 = vector [0.001; -2.0; 0.0; 10000.0]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = Vector.cityblock v1 v2
Expect.floatClose Accuracy.high distance 10008.999 "Should be equal"
testCase "cityblockinf" <| fun () ->
let v1 = vector [0.001; -2.0; -infinity; infinity]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = Vector.cityblock v1 v2
Expect.equal distance infinity "Should be equal"
testCase "cityblock0" <| fun () ->
let v1 = vector [0.0; 0.0; 0.0; 0.0]
let v2 = vector [0.0;0.0;0.0;0.0]
let distance = Vector.cityblock v1 v2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "cityblocknan" <| fun () ->
let v1 = vector [00.001; -2.0; 0.0; nan]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = Vector.cityblock v1 v2
Expect.isTrue (nan.Equals(distance)) "Distance should be NaN"
testCase "cityblockNaN" <| fun () ->
let v1 = vector [0.001; -2.0; 0.0; 10000.0]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = Vector.cityblockNaN v1 v2
Expect.floatClose Accuracy.high distance 10008.999 "Should be equal"
testCase "cityblockNaNinf" <| fun () ->
let v1 = vector [0.001; -2.0; -infinity; infinity]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = Vector.cityblockNaN v1 v2
Expect.equal distance infinity "Should be equal"
testCase "cityblockNaN0" <| fun () ->
let v1 = vector [0.0; 0.0; 0.0; 0.0]
let v2 = vector [0.0;0.0;0.0;0.0]
let distance = Vector.cityblockNaN v1 v2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "cityblockNaNnan" <| fun () ->
let v1 = vector [00.001; -2.0; 0.0; nan]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = Vector.cityblockNaN v1 v2
Expect.floatClose Accuracy.high distance 9.999 "Should be equal"
]
[<Tests>]
let cityblockarrayfunctiontests =
testList "DistanceMetrics.cityblockarray" [
testCase "cityblock" <| fun () ->
let a1 = [|0.001; -2.0; 0.0; 10000.0|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = cityblock a1 a2
Expect.floatClose Accuracy.high distance 10008.999 "Should be equal"
testCase "cityblockinf" <| fun () ->
let a1 = [|0.001; -2.0; -infinity; infinity|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = cityblock a1 a2
Expect.equal distance infinity "Should be equal"
testCase "cityblock0" <| fun () ->
let a1 = [|0.0; 0.0; 0.0; 0.0|]
let a2 = [|0.0;0.0;0.0;0.0|]
let distance = cityblock a1 a2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "cityblocknan" <| fun () ->
let a1 = [|00.001; -2.0; 0.0; nan|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = cityblock a1 a2
Expect.isTrue (nan.Equals(distance)) "Distance should be NaN"
testCase "cityblockNaN" <| fun () ->
let a1 = [|0.001; -2.0; 0.0; 10000.0|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = cityblockNaN a1 a2
Expect.floatClose Accuracy.high distance 10008.999 "Should be equal"
testCase "cityblockNaNinf" <| fun () ->
let a1 = [|0.001; -2.0; -infinity; infinity|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = cityblockNaN a1 a2
Expect.equal distance infinity "Should be equal"
testCase "cityblockNaN0" <| fun () ->
let a1 = [|0.0; 0.0; 0.0; 0.0|]
let a2 = [|0.0;0.0;0.0;0.0|]
let distance = cityblockNaN a1 a2
Expect.floatClose Accuracy.high distance 0.0 "Should be equal"
testCase "cityblockNaNnan" <| fun () ->
let a1 = [|00.001; -2.0; 0.0; nan|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = cityblockNaN a1 a2
Expect.floatClose Accuracy.high distance 9.999 "Should be equal"
]
[<Tests>]
let Levenshteindistancetest =
testList "DistanceMetrics.levenshteindistance" [
// normal test case from Aung, K. M. M. (2019). Comparison of levenshtein distance algorithm and needleman-wunsch distance algorithm for string matching (Doctoral dissertation, MERAL Portal).
testCase "Levenstein" <|fun () ->
let string1 = "hello"
let string2 = "helo"
let distnace = wagnerFischerLazy string1 string2
Expect.equal distnace 1 "should be equal"
//TestCases from R stringdist('hello', '', method = 'lv') "R version 4.0.3 (2020-10-10)"
testCase "Levensteinoneempty" <|fun () ->
let string1 = "hello"
let string2 = ""
let distance = wagnerFischerLazy string1 string2
Expect.equal distance 5 "should be equal"
//TestCases from R stringdist('', '', method = 'lv') "R version 4.0.3 (2020-10-10)"
testCase "Levensteinbothempty" <|fun ()->
let string1 = ""
let string2 = ""
let distance = wagnerFischerLazy string1 string2
Expect.equal distance 0 "should be equal"
]
[<Tests>]
let minkowskiseqfunctiontests =
testList "DistanceMetrics.minkowskisequence" [
testCase "minkowskiNoValue" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; 10_000.0}
let seq2 = seq {2.0; -10.0; 0.0; 1.0}
let distance = minkowski seq1 seq2 0.0
Expect.isTrue distance.IsNone "No Value"
testCase "minkowskiVsEuclidian" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; 10_000.0}
let seq2 = seq {2.0; -10.0; 0.0; 1.0}
let distance = minkowski seq1 seq2 2.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 9999.0034 "Should be equal"
testCase "minkowskiOrder3" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; 1.5}
let seq2 = seq {2.0; -10.0; 0.5; 1.0}
let distance = minkowski seq1 seq2 3.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 8.04267819780 "Should be equal"
testCase "minkowskiOrder5" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; 1.5}
let seq2 = seq {2.0; -10.0; 0.5; 1.0}
let distance = minkowski seq1 seq2 5.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 8.00156104008 "Should be equal"
testCase "minkowskiOrder0.5" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; 1.5}
let seq2 = seq {2.0; -10.0; 0.5; 1.0}
let distance = minkowski seq1 seq2 0.5
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 5.6565006518965619264 "Should be equal"
testCase "minkowskiLengths" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; 1.5}
let seq2 = seq {2.0; -10.0; 0.5; 1.0; 1_000.0; 6.0; 7.} // last elements are ignored
let distance = minkowski seq1 seq2 5.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 8.00156104008 "Should be equal"
testCase "minkowskiWithNaN" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; nan}
let seq2 = seq {2.0; -10.0; 0.0; 1.0; 0.0}
let distance = minkowski seq1 seq2 3.0
Expect.isTrue distance.IsSome "Has Value"
Expect.isTrue (nan.Equals(distance.Value)) "Distance should be NaN"
testCase "minkowskiNaN" <| fun () ->
let seq1 = seq {0.001; -2.0; 0.0; 10_000.0; nan}
let seq2 = seq {2.0; -10.0; 0.0; 1.0; 0.0}
let distance = minkowskiNaN seq1 seq2 2.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 9999.0034 "Should be equal"
testCase "minkowskiInf" <| fun () ->
let seq1 = seq {0.001; -2.0; -infinity; infinity}
let seq2 = seq {2.0;-10.0;0.0;1.0}
let distance = minkowski seq1 seq2 2.0
Expect.isTrue distance.IsSome "Has Value"
Expect.equal distance.Value infinity "Should be equal"
testCase "minkowski0" <| fun () ->
let seq1 = seq {0.0; 0.0; 0.0; 0.0}
let seq2 = seq {0.0; 0.0; 0.0; 0.0}
let distance = minkowski seq1 seq2 2.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 0.0 "Should be equal"
]
[<Tests>]
let minkowskivectorfunctiontests =
testList "DistanceMetrics.minkowskivector" [
testCase "minkowskiNoValue" <| fun () ->
let v1 = vector [0.001; -2.0; 0.0; 10_000.0]
let v2 = vector [2.0; -10.0; 0.0; 1.0]
let distance = Vector.minkowski v1 v2 0.0
Expect.isTrue distance.IsNone "No Value"
testCase "minkowskiVsEuclidian" <| fun () ->
let v1 = vector [0.001; -2.0; 0.0; 10_000.0]
let v2 = vector [2.0; -10.0; 0.0; 1.0]
let distance = Vector.minkowski v1 v2 2.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 9999.0034 "Should be equal"
testCase "minkowskiOrder3" <| fun () ->
let v1 = vector [0.001; -2.0; 0.0; 1.5]
let v2 = vector [2.0; -10.0; 0.5; 1.0]
let distance = Vector.minkowski v1 v2 3.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 8.04267819780 "Should be equal"
testCase "minkowskiOrder5" <| fun () ->
let v1 = vector [0.001; -2.0; 0.0; 1.5]
let v2 = vector [2.0; -10.0; 0.5; 1.0]
let distance = Vector.minkowski v1 v2 5.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 8.00156104008 "Should be equal"
testCase "minkowskiOrder0.5" <| fun () ->
let v1 = vector [0.001; -2.0; 0.0; 1.5]
let v2 = vector [2.0; -10.0; 0.5; 1.0]
let distance = Vector.minkowski v1 v2 0.5
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 5.6565006518965619264 "Should be equal"
testCase "minkowskiLengths" <| fun () ->
let v1 = vector [0.001; -2.0; 0.0; 1.5]
let v2 = vector [2.0; -10.0; 0.5; 1.0; 1_000.0; 6.0; 7.0]// last elements are ignored
let distance = Vector.minkowski v1 v2 5.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 8.00156104008 "Should be equal"
testCase "minkowskiWithNaN" <| fun () ->
let v1 = vector [0.001; -2.0; 0.0; nan]
let v2 = vector [2.0; -10.0; 0.0; 1.0; 0.0]
let distance = Vector.minkowski v1 v2 3.0
Expect.isTrue distance.IsSome "Has Value"
Expect.isTrue (nan.Equals(distance.Value)) "Distance should be NaN"
testCase "minkowskiNaN" <| fun () ->
let v1 = vector [0.001; -2.0; 0.0; 10_000.0; nan]
let v2 = vector [2.0; -10.0; 0.0; 1.0; 0.0]
let distance = Vector.minkowskiNaN v1 v2 2.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 9999.0034 "Should be equal"
testCase "minkowskiInf" <| fun () ->
let v1 = vector [0.001; -2.0; -infinity; infinity]
let v2 = vector [2.0;-10.0;0.0;1.0]
let distance = Vector.minkowski v1 v2 2.0
Expect.isTrue distance.IsSome "Has Value"
Expect.equal distance.Value infinity "Should be equal"
testCase "minkowski0" <| fun () ->
let v1 = vector [0.0; 0.0; 0.0; 0.0]
let v2 = vector [0.0; 0.0; 0.0; 0.0]
let distance = Vector.minkowski v1 v2 2.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 0.0 "Should be equal"
]
[<Tests>]
let minkowskiarrayfunctiontests =
testList "DistanceMetrics.minkowskiarray" [
testCase "minkowskiNoValue" <| fun () ->
let a1 = [|0.001; -2.0; 0.0; 10_000.0|]
let a2 = [|2.0; -10.0; 0.0; 1.0|]
let distance = Array.minkowski a1 a2 0.0
Expect.isTrue distance.IsNone "No Value"
testCase "minkowskiVsEuclidian" <| fun () ->
let a1 = [|0.001; -2.0; 0.0; 10_000.0|]
let a2 = [|2.0; -10.0; 0.0; 1.0|]
let distance = Array.minkowski a1 a2 2.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 9999.0034 "Should be equal"
testCase "minkowskiOrder3" <| fun () ->
let a1 = [|0.001; -2.0; 0.0; 1.5|]
let a2 = [|2.0; -10.0; 0.5; 1.0|]
let distance = Array.minkowski a1 a2 3.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 8.04267819780 "Should be equal"
testCase "minkowskiOrder5" <| fun () ->
let a1 = [|0.001; -2.0; 0.0; 1.5|]
let a2 = [|2.0; -10.0; 0.5; 1.0|]
let distance = Array.minkowski a1 a2 5.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 8.00156104008 "Should be equal"
testCase "minkowskiOrder0.5" <| fun () ->
let a1 = [|0.001; -2.0; 0.0; 1.5|]
let a2 = [|2.0; -10.0; 0.5; 1.0|]
let distance = Array.minkowski a1 a2 0.5
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 5.6565006518965619264 "Should be equal"
testCase "minkowskiLengths" <| fun () ->
let a1 = [|0.001; -2.0; 0.0; 1.5|]
let a2 = [|2.0; -10.0; 0.5; 1.0; 1_000.0; 6.0; 7.0|] // last elements are ignored
let distance = Array.minkowski a1 a2 5.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 8.00156104008 "Should be equal"
testCase "minkowskiWithNaN" <| fun () ->
let a1 = [|0.001; -2.0; 0.0; nan|]
let a2 = [|2.0; -10.0; 0.0; 1.0; 0.0|]
let distance = Array.minkowski a1 a2 3.0
Expect.isTrue distance.IsSome "Has Value"
Expect.isTrue (nan.Equals(distance.Value)) "Distance should be NaN"
testCase "minkowskiNaN" <| fun () ->
let a1 = [|0.001; -2.0; 0.0; 10_000.0; nan|]
let a2 = [|2.0; -10.0; 0.0; 1.0; 0.0|]
let distance = Array.minkowskiNaN a1 a2 2.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 9999.0034 "Should be equal"
testCase "minkowskiInf" <| fun () ->
let a1 = [|0.001; -2.0; -infinity; infinity|]
let a2 = [|2.0;-10.0;0.0;1.0|]
let distance = Array.minkowski a1 a2 2.0
Expect.isTrue distance.IsSome "Has Value"
Expect.equal distance.Value infinity "Should be equal"
testCase "minkowski0" <| fun () ->
let a1 = [|0.0; 0.0; 0.0; 0.0|]
let a2 = [|0.0; 0.0; 0.0; 0.0|]
let distance = Array.minkowski a1 a2 2.0
Expect.isTrue distance.IsSome "Has Value"
Expect.floatClose Accuracy.high distance.Value 0.0 "Should be equal"
]