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fulcrumgenomics / ref-solver Public

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feat: normalize SAM whitespace and stream headers from uploads#14

Merged

nh13 merged 7 commits into

mainfulcrumgenomics/ref-solver:mainfrom

nh/normalize-sam-whitespacefulcrumgenomics/ref-solver:nh/normalize-sam-whitespaceCopy head branch name to clipboard

Mar 26, 2026

Conversation Commits7 (7)Checks Files changed

Merged

feat: normalize SAM whitespace and stream headers from uploads#14
nh13 merged 7 commits into
mainfrom
nh/normalize-sam-whitespace

Commits

Commits on Mar 26, 2026

feat: add reader-based BAM/CRAM header parsing functions
nh13
committed
refactor: use reader-based parsing for BAM/CRAM, eliminate temp files
nh13
committed
feat: cap binary file uploads at 4MB for header-only parsing
nh13
committed
feat: extract BAM headers client-side before upload
nh13
committed
feat: show upload size limit and header extraction info in web UI
nh13
committed
test: add integration tests for reader-based BAM header parsing
nh13
committed
refactor: simplify headerExtractor, fix review findings
nh13
committed

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