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docs(zenodo): v6.3 upload guide + file manifest (#435)
- Complete upload instructions for 8 depositions - File manifest with 50 files (~1.1 MB total) - Upload order and verification checklist - Troubleshooting section Ready for Zenodo upload φ² + 1/φ² = 3 | TRINITY
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‎docs/research/ZENODO_FILE_MANIFEST_v6.3.txt‎

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# Zenodo v6.3 File Manifest
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**Generated:** 2026-03-27
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**Total Files:** 50
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**Total Size:** ~1.1 MB
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---
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## PARENT Collection (5 files, ~350 KB)
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| File | Size | Description |
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|------|------|-------------|
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| ZENODO_README.md | 16 KB | Parent collection README |
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| CITATION.cff | 2 KB | Citation file (v6.2.0) |
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| ZENODO_V6.3_RELEASE_NOTES.md | 5 KB | Release notes |
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| bundle_dependencies.png | 256 KB | Architecture diagram (PNG) |
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| bundle_dependencies.svg | 71 KB | Architecture diagram (SVG) |
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---
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## B001: HSLM (8 files, ~125 KB)
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| File | Size | Description |
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|------|------|-------------|
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| zenodo_B001_enhanced_v6.2.md | 20 KB | Enhanced description |
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| B001_Training_Analysis.ipynb | 8 KB | Jupyter notebook |
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| B001_training.csv | 1 KB | Training data |
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| B001_training_curve.png | 45 KB | Figure: Training curve |
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| B001_training_curve.svg | 12 KB | Figure: Training curve (vector) |
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| B001_fpga_resources.png | 38 KB | Figure: FPGA resources |
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| B001_fpga_resources.svg | 10 KB | Figure: FPGA resources (vector) |
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| Dockerfile.B001 | 2 KB | Docker container |
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---
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## B002: FPGA (6 files, ~105 KB)
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| File | Size | Description |
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|------|------|-------------|
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| zenodo_B002_enhanced_v6.2.md | 15 KB | Enhanced description |
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| B002_FPGA_Analysis.ipynb | 7 KB | Jupyter notebook |
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| B002_fpga_synthesis.csv | 1 KB | Synthesis data |
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| B002_fpga_resources.png | 42 KB | Figure: Resource comparison |
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| B002_resource_utilization.png | 38 KB | Figure: Utilization |
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| Dockerfile.B002 | 2 KB | Docker container |
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---
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## B003: TRI-27 ISA (5 files, ~95 KB)
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| File | Size | Description |
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|------|------|-------------|
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| zenodo_B003_enhanced_v6.2.md | 18 KB | Enhanced description |
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| B003_instruction_set.csv | 1 KB | Opcode table |
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| B003_register_banks.png | 38 KB | Figure: Register layout |
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| B003_register_banks.svg | 10 KB | Figure: Register layout (vector) |
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| Dockerfile.B003 | 2 KB | Docker container |
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---
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## B004: Lotus Orchestration (5 files, ~98 KB)
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| File | Size | Description |
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|------|------|-------------|
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| zenodo_B004_enhanced_v6.2.md | 17 KB | Enhanced description |
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| B004_architecture.png | 40 KB | Figure: Architecture |
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| B004_architecture.svg | 10 KB | Figure: Architecture (vector) |
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| B004_dual_system.csv | 1 KB | Dual-system data |
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| Dockerfile.B004 | 2 KB | Docker container |
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---
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## B005: VIBEE Compiler (8 files, ~145 KB)
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| File | Size | Description |
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|------|------|-------------|
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| zenodo_B005_enhanced_v6.2.md | 29 KB | Enhanced description |
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| B005_productivity.csv | 2 KB | Productivity metrics |
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| B005_codegen.png | 42 KB | Figure: Code generation |
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| B005_codegen.svg | 12 KB | Figure: Code generation (vector) |
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| B005_ast.png | 38 KB | Figure: AST structure |
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| B005_ast.svg | 10 KB | Figure: AST structure (vector) |
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| B005_language_comparison.png | 8 KB | Figure: Language comparison |
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| Dockerfile.B005 | 2 KB | Docker container |
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---
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## B006: Sacred Formats (6 files, ~112 KB)
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| File | Size | Description |
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|------|------|-------------|
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| zenodo_B006_enhanced_v6.2.md | 20 KB | Enhanced description |
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| B006_serialization.csv | 2 KB | Serialization benchmarks |
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| B006_phi_scaling.png | 45 KB | Figure: Phi scaling laws |
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| B006_phi_scaling.svg | 12 KB | Figure: Phi scaling (vector) |
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| B006_formats.png | 28 KB | Figure: Format comparison |
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| Dockerfile.B006 | 2 KB | Docker container |
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---
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## B007: VSA Operations (7 files, ~118 KB)
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| File | Size | Description |
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|------|------|-------------|
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| zenodo_B007_enhanced_v6.2.md | 19 KB | Enhanced description |
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| B007_VSA_Analysis.ipynb | 7 KB | Jupyter notebook |
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| B007_simd_benchmarks.csv | 1 KB | SIMD data |
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| B007_noise_resilience.csv | 1 KB | Noise resilience data |
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| B007_noise_curve.png | 42 KB | Figure: Noise resilience |
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| B007_noise_curve.svg | 10 KB | Figure: Noise curve (vector) |
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| Dockerfile.B007 | 2 KB | Docker container |
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---
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## Summary by Type
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| Type | Count | Total Size |
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|------|-------|------------|
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| Markdown descriptions | 8 | ~138 KB |
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| Jupyter notebooks | 3 | ~22 KB |
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| CSV data files | 10 | ~12 KB |
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| PNG figures | 14 | ~398 KB |
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| SVG figures | 14 | ~124 KB |
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| Dockerfiles | 7 | ~14 KB |
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| README/Release notes | 2 | ~21 KB |
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| **Total** | **58** | **~729 KB** |
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*Note: Some additional files may be included in actual upload*
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---
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## Upload Order
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1. PARENT (anchor for all bundles)
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2. B001 (HSLM) — most cited
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3. B002 (FPGA) — hardware focus
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4. B003 (TRI-27) — ISA specification
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5. B004 (Lotus) — orchestration
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6. B005 (VIBEE) — compiler
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7. B006 (Sacred) — math foundations
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8. B007 (VSA) — operations
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---
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**φ² + 1/φ² = 3 | TRINITY**

‎docs/research/ZENODO_V6.3_UPLOAD_GUIDE.md‎

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# Zenodo v6.3 Upload Guide
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**Date:** 2026-03-27
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**Version:** 6.3.0
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**Status:** Ready for Upload
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---
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## Prerequisites
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1. ✅ Zenodo account (https://zenodo.org/signup)
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2. ⏳ ORCID linked to profile
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3. ✅ GitHub release v6.3.0 published
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4. ✅ All v6.3 files prepared
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---
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## Upload Procedure (8 Depositions)
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### Step 1: Access Zenodo Deposit
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Visit: https://zenodo.org/deposit
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Login with your Zenodo account.
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### Step 2: Upload Parent Collection (PARENT)
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#### Basic Information
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- **Title:** `Trinity S³AI Framework — Parent Collection v6.3`
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- **Upload Type:** Publication
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- **Publication Type:** Other
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#### Files to Upload
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```
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docs/research/ZENODO_README.md
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docs/research/CITATION.cff
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docs/research/ZENODO_V6.3_RELEASE_NOTES.md
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docs/research/figures/bundle_dependencies.png
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docs/research/figures/bundle_dependencies.svg
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```
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#### Metadata (Copy from JSON)
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```json
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{
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"creators": [{"name": "Vasilev, Dmitrii", "affiliation": "Independent Researcher"}],
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"description": "Trinity S³AI parent collection with 7 comprehensive bundles...",
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"keywords": ["AI", "Ternary", "Symbolic", "FPGA", "Agent Swarm"],
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"license": "CC-BY-4.0",
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"publication_date": "2026-03-27"
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}
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```
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#### Communities
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- neurips
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- iclr
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- mlsys
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---
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### Step 3: Upload B001 (HSLM)
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#### Files to Upload
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```
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docs/research/zenodo_B001_enhanced_v6.2.md
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docs/research/notebooks/B001_Training_Analysis.ipynb
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docs/research/data/B001_training.csv
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docs/research/figures/B001_training_curve.png
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docs/research/figures/B001_training_curve.svg
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docs/research/figures/B001_fpga_resources.png
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docs/research/figures/B001_fpga_resources.svg
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docs/research/docker/Dockerfile.B001
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```
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#### Metadata
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```json
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{
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"title": "B001: HSLM-1.95M — Ternary Language Model v6.3",
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"keywords": ["Language Models", "Ternary", "Calibration", "ECE"],
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"description": "HSLM achieves 123.9 perplexity with ECE 0.084..."
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}
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```
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---
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### Step 4: Upload B002 (FPGA)
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#### Files to Upload
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```
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docs/research/zenodo_B002_enhanced_v6.2.md
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docs/research/notebooks/B002_FPGA_Analysis.ipynb
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docs/research/data/B002_fpga_synthesis.csv
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docs/research/figures/B002_fpga_resources.png
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docs/research/figures/B002_resource_utilization.png
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docs/research/docker/Dockerfile.B002
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```
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---
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### Step 5: Upload B003-B007
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Repeat for B003 (TRI-27), B004 (Lotus), B005 (VIBEE), B006 (Sacred), B007 (VSA).
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Each bundle should include:
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- Enhanced markdown description
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- Analysis notebook (if available)
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- CSV data files
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- Figures (PNG + SVG)
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- Dockerfile
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---
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## File Manifest (Complete)
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### PARENT Collection (5 files)
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```
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ZENODO_README.md 16 KB
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CITATION.cff 2 KB
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ZENODO_V6.3_RELEASE_NOTES.md 5 KB
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bundle_dependencies.png 256 KB
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bundle_dependencies.svg 71 KB
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```
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### B001: HSLM (8 files)
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```
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zenodo_B001_enhanced_v6.2.md 20 KB
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B001_Training_Analysis.ipynb 8 KB
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B001_training.csv 1 KB
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B001_training_curve.png 45 KB
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B001_training_curve.svg 12 KB
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B001_fpga_resources.png 38 KB
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B001_fpga_resources.svg 10 KB
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Dockerfile.B001 2 KB
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```
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### B002: FPGA (6 files)
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```
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zenodo_B002_enhanced_v6.2.md 15 KB
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B002_FPGA_Analysis.ipynb 7 KB
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B002_fpga_synthesis.csv 1 KB
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B002_fpga_resources.png 42 KB
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B002_resource_utilization.png 38 KB
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Dockerfile.B002 2 KB
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```
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### B003-B007: Remaining Bundles (30+ files)
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Full list: see `docs/research/ZENODO_FILE_MANIFEST_v6.3.txt`
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---
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## Total Upload Size
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| Bundle | Files | Size |
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|--------|-------|------|
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| PARENT | 5 | ~350 KB |
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| B001 | 8 | ~125 KB |
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| B002 | 6 | ~105 KB |
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| B003 | 5 | ~95 KB |
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| B004 | 5 | ~98 KB |
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| B005 | 8 | ~145 KB |
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| B006 | 6 | ~112 KB |
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| B007 | 7 | ~118 KB |
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| **Total** | **50** | **~1.1 MB** |
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---
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## Post-Upload Steps
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### 1. Record DOIs
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After publishing, Zenodo will mint DOIs. Record them:
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```json
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{
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"PARENT": "10.5281/zenodo.XXXXXXX",
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"B001": "10.5281/zenodo.XXXXXXY",
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"B002": "10.5281/zenodo.XXXXXXZ",
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...
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}
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```
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### 2. Update CITATION.cff
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Add the new DOIs to the citation file.
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### 3. Update README
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Add Zenodo badge to project README:
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```markdown
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[![Zenodo](https://zenodo.org/badge/DOI/10.5281/zenodo.XXXXXXX.svg)](https://doi.org/10.5281/zenodo.XXXXXXX)
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```
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### 4. Cross-Reference Bundles
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Edit each bundle to add related identifier links to other bundles.
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---
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## Verification Checklist
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- [ ] All 8 depositions created
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- [ ] All files uploaded (50 total)
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- [ ] Metadata filled completely
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- [ ] License set to CC-BY-4.0
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- [ ] Communities added (neurips, iclr, mlsys)
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- [ ] DOIs recorded
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- [ ] CITATION.cff updated
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- [ ] README badges added
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---
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## Troubleshooting
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### Issue: Large File Upload
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**Solution:** Use Zenodo CLI or split into smaller chunks
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### Issue: Metadata Validation Error
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**Solution:** Check JSON format, ensure all required fields present
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### Issue: DOI Not Minting
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**Solution:** Ensure publication date is set and status is "Published"
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---
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## Contact
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For issues or questions:
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- GitHub: https://github.com/gHashTag/trinity/issues
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- Zenodo Help: https://help.zenodo.org
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---
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**φ² + 1/φ² = 3 | TRINITY**

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