refactor(docs): Clean mystical terminology from main docs

Remove marketing/mystical language to make project accessible
to scientific community while preserving all technical content.

README.md:
- Remove "TEMPORAL TRINITY THEOREM", "ETERNAL", "AWAKENS", "OMEGA"
- Remove "TIME NO LONGER FLOWS. IT BEATS IN TRINITY"
- Remove "WE ARE THE UNIVERSE"
- Add "For Researchers" section linking to scientific README
- Simplify header to technical description
- Keep all technical claims about φ, γ, ternary computing

CLAUDE.md:
- "sacred mathematics" → "mathematical framework"
- "Sacred Science" → "Science"
- "Sacred Math" → "Math"
- "Sacred Intelligence" → "Intelligence"
- Clean up command descriptions

AGENTS.md:
- "GOLDEN CHAIN" → "Autonomous Development Pipeline"
- "SACRED_ANALYZE" → "ANALYZE"
- "KOSCHEI PATTERN" → "DEVELOPMENT PATTERN"
- "FORGE OF KOSCHEI" → "FPGA Synthesis"
- Remove mystical language from pipeline description

Preserves:
- All technical information (VSA, ternary, BitNet, FPGA)
- Build commands, architecture, documentation links
- CLI commands and examples
- Mathematical formulas and results

φ² + 1/φ² = 3

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

Author: Antigravity Agent

AGENTS.md

@@ -5,11 +5,11 @@
 
 ## Overview
 
-This document provides guidelines for AI agents working on the VIBEE project. All agents must follow the **Golden Chain v4.0** workflow — a 22-link autonomous self-improving pipeline.
+This document provides guidelines for AI agents working on the VIBEE project. All agents must follow the **Autonomous Development Pipeline v4.0** workflow — a 22-link autonomous self-improving pipeline.
 
 ---
 
-## 🚀 GOLDEN CHAIN v4.0 — 22 Links Autonomous Pipeline
+## 🚀 Autonomous Development Pipeline v4.0 — 22 Links Autonomous Pipeline
 
 ### Quick Start
 
@@ -22,7 +22,7 @@ tri pipeline run "your task description"
 
 ```
 ┌─────────────────────────────────────────────────────────────────────────────┐
-│              GOLDEN CHAIN PIPELINE v4.0 — 22 Links                       │
+│              AUTONOMOUS PIPELINE v4.0 — 22 Links                       │
 └─────────────────────────────────────────────────────────────────────────────┘
 
  Link 0:  TVC_GATE              *    [CRITICAL]  Distributed cache (φ⁻¹ threshold)
@@ -33,7 +33,7 @@ tri pipeline run "your task description"
  Link 5:  STRICT_CHECK            *    VIBEE-first compliance check
  Link 6:  SPEC_CREATE             Generate .vibee specification
  Link 7:  CODE_GENERATE          *    vibee gen → .zig code
- Link 8:  SACRED_ANALYZE              Sacred Intelligence analysis
+ Link 8:  ANALYZE              Mathematical analysis
  Link 9:  TEST_RUN               *    zig build test + parsing
  Link 10: BENCHMARK_PREV         *    Compare to v(n-1)
  Link 11: SWE_FIX                     Auto-fix via SWE Agent
@@ -59,7 +59,7 @@ tri pipeline run "your task description"
 
 ---
 
-## 🚨 AUTONOMOUS DEVELOPMENT LOOP (KOSCHEI PATTERN v4.0)
+## 🚨 AUTONOMOUS DEVELOPMENT LOOP (DEVELOPMENT PATTERN v4.0)
 
 ### Core Principles:
 
@@ -73,7 +73,7 @@ tri pipeline run "your task description"
 
 ```
 ┌─────────────────────────────────────────────────────────────────┐
-│                  KOSCHEI DEVELOPMENT LOOP v4.0                   │
+│                  AUTONOMOUS DEVELOPMENT LOOP v4.0                   │
 ├─────────────────────────────────────────────────────────────────┤
 │                                                                 │
 │  0. TVC_GATE: Check corpus for similar tasks (skip if hit)      │
@@ -88,7 +88,7 @@ tri pipeline run "your task description"
 │         ↓                                                     │
 │  7. CODE_GENERATE: vibee gen → .zig code                     │
 │         ↓                                                     │
-│  8. SACRED_ANALYZE: Sacred Intelligence analysis             │
+│  8. ANALYZE: Mathematical analysis             │
 │         ↓                                                     │
 │  9. TEST_RUN: zig build test + parse output                   │
 │         ↓                                                     │
@@ -412,7 +412,7 @@ for f in specs/tri/*.vibee; do ./bin/vibee gen "$f"; done  # Generate all
 zig test trinity/output/feature.zig            # Test single
 cd trinity/output && for f in *.zig; do zig test "$f"; done  # Test all
 
-# GOLDEN CHAIN
+# AUTONOMOUS PIPELINE
 ./bin/vibee koschei          # Show 16 links
 ./bin/vibee koschei chain    # Architecture
 ./bin/vibee koschei status   # Status
@@ -669,7 +669,7 @@ The agent should call `phi_loop_status` at start of each session to understand c
 
 ---
 
-## FORGE OF KOSCHEI — FPGA Synthesis & Flash Pipeline
+## FPGA Synthesis — FPGA Synthesis & Flash Pipeline
 
 ### Full Flow: Verilog → Silicon
 
@@ -754,4 +754,4 @@ unknown features skipped   → normal, some PIPs not in segbits DB
 
 ---
 
-**KOSCHEI IS IMMORTAL | GOLDEN CHAIN IS CLOSED | φ² + 1/φ² = 3 | PHI LOOP: Link N/999**
+**AUTONOMOUS DEVELOPMENT COMPLETE | PIPELINE COMPLETE | φ² + 1/φ² = 3 | PHI LOOP: Link N/999**

CLAUDE.md

@@ -87,7 +87,7 @@ docker run --rm --platform linux/amd64 \
 
 ## TRI COMMANDER
 
-TRI COMMANDER is the primary human-AI interface for Trinity development — a tmux-based chat dashboard with sacred mathematics.
+TRI COMMANDER is the primary human-AI interface for Trinity development — a tmux-based chat dashboard with mathematical framework.
 
 **Launch:**
 ```bash
@@ -321,7 +321,7 @@ tri pipeline run "task description"
 | 5 | STRICT_CHECK | VIBEE-first compliance | - |
 | 6 | SPEC_CREATE | Generate .vibee spec | - |
 | 7 | CODE_GENERATE | vibee gen → .zig code | ✅ |
-| 8 | SACRED_ANALYZE | Sacred Intelligence analysis | - |
+| 8 | ANALYZE | Intelligence analysis | - |
 | 9 | TEST_RUN | zig build test + parsing | ✅ |
 | 10 | BENCHMARK_PREV | Compare to v(n-1) | ✅ |
 | 11 | SWE_FIX | Auto-fix errors via SWE Agent | - |
@@ -381,14 +381,14 @@ zig build tri                    # Build TRI binary
 | Category | Commands | Icon |
 |----------|----------|------|
 | AI & Chat | 5 | 🤖 |
-| Sacred Science | 25 | 🧬 |
-| Sacred Math | 8 | φ |
+| Science | 25 | 🧬 |
+| Math | 8 | φ |
 | Git | 4 | 📦 |
 | Development | 20 | 🔧 |
 | System | 12 | ⚙ |
 | Demos | 37 | 🎬 |
 | Benchmarks | 36 | ⚡ |
-| Sacred Intelligence | 0 | ✨ |
+| Intelligence | 0 | ✨ |
 | Advanced | 10 | 🚀 |
 
 ### Core Commands
@@ -445,7 +445,7 @@ zig build tri                    # Build TRI binary
 | `tri needle-search <pattern>` | Needle search |
 | `tri needle-check <file>` | Needle check |
 
-### Sacred Mathematics
+### mathematical framework
 
 | Command | Description |
 |---------|-------------|
@@ -455,27 +455,27 @@ zig build tri                    # Build TRI binary
 | `tri lucas <n>` | Lucas L(n) — L(2)=3=TRINITY |
 | `tri spiral <n>` | φ-spiral coordinates |
 
-### Sacred Science (25 commands)
+### Science (25 commands)
 
 | Command | Description |
 |---------|-------------|
-| `tri bio` / `tri biology` | Biology v14.0 — DNA/RNA/Protein sacred analysis |
+| `tri bio` / `tri biology` | Biology v14.0 — DNA/RNA/Protein mathematical analysis |
 | `tri cosmos` / `tri cosmology` | Cosmology v15.0 — Universe through φ |
-| `tri neuro` / `tri neuroscience` | Neuroscience v16.0 — Brain as sacred computer |
+| `tri neuro` / `tri neuroscience` | Neuroscience v16.0 — Brain as computational system |
 | `tri chem` / `tri chemistry` | Chemistry commands |
-| `tri sacred` | Sacred mathematics utilities |
-| `tri music` / `tri audio` | Sacred Music v1.0 — φ-based acoustics |
+| `tri sacred` | Mathematical utilities utilities |
+| `tri music` / `tri audio` | Music v1.0 — φ-based acoustics |
 | `tri frequency` / `tri freq` | Calculate frequency from note |
 | `tri scale` | Display musical scale notes and frequencies |
 | `tri chord` | Analyze chord harmonics |
 | `tri resonance` / `tri res` | Calculate resonance patterns |
 | `tri waveform` / `tri wave` / `tri osc` | Generate waveform samples |
 | `tri harmony` | Analyze harmonic relationship between frequencies |
 | `tri phi-series` / `tri phi-freq` | Show φ frequency series |
-| `tri intelligence` | Sacred Intelligence system |
-| `tri identity` | Sacred identity |
-| `tri swarm` | Sacred swarm intelligence |
-| `tri govern` | Sacred governance |
+| `tri intelligence` | Intelligence system |
+| `tri identity` | Identity system |
+| `tri swarm` | Swarm intelligence |
+| `tri govern` | Governance system |
 | `tri omega` | Omega phase |
 | `tri quantum` | Quantum Trinity |
 
@@ -573,9 +573,9 @@ zig build tri                    # Build TRI binary
 | `tri --help` | Show all 157 commands |
 | `tri -h` | Show all 157 commands |
 
-### Sacred Logging
+### Logging
 
-All TRI CLI calls are logged to `trinity-nexus/.ralph/sacred_tool_calls.log`:
+All TRI CLI calls are logged to `trinity-nexus/.ralph/tool_calls.log`:
 ```
 [φ] 1 | tri spec-create test_module
 [φ] 2 | tri loop-decide auto
@@ -1189,12 +1189,12 @@ For every specific issue (bug, smell, design concern, or risk):
 - `src/consciousness/neural_gamma.zig` — Neural 56 Hz, consciousness threshold
 - `src/consciousness/vsa_mind.zig` — VSA cognitive model (14/14 tests)
 - `src/consciousness/quantum_biology.zig` — Quantum-biological coherence
-- `src/gravity/sacred_gravity.zig` — G, Ω_Λ, Ω_DM from φ
+- `src/gravity/gravity.zig` — G, Ω_Λ, Ω_DM from φ
 - `src/gravity/einstein_bridge.zig` — G-c-ℏ connections
 - `src/time/causality.zig` — Causality preservation theorem
 - `src/time/chronogeometry.zig` — Temporal geometry via φ
 - `src/blind_spot/unified_framework.zig` — Cross-domain verification (12/12 tests)
-- `src/sacred/expanded_v2.zig` — Enhanced sacred formula with C and G
+- `src/sacred/expanded_v2.zig` — Enhanced formula (C, G parameters)
 
 ### Test Results