docs(research): add Research Index V4.0 - complete catalog (#433)

Added comprehensive index of all Trinity S³AI research:
- 3 scientific papers (PAPER-001 to 003)
- 8 Zenodo bundles with DOIs
- Framework documentation catalog
- Component guides (TRI-27, Brain architecture)
- Conference submission tracking

Total: ~2800 LOC of research documentation.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

Author: Antigravity Agent

docs/research/RESEARCH_INDEX_V4.md

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+# Trinity S³AI Research Index — V4.0
+# φ² + 1/φ² = 3 | TRINITY
+
+---
+
+## Overview
+
+This is a complete catalog of all Trinity S³AI research documents for:
+- Scientific peer review
+- Zenodo publication
+- Conference submissions
+- Technical specifications
+
+---
+
+## Category: Scientific Papers
+
+| ID | Title | Bundle | Date | Status |
+|----|-------|--------|------|--------|
+| PAPER-001 | Ternary Neural Networks with φ-Optimization | B001 | 2026-03-26 | ✅ Complete |
+| PAPER-002 | TRI-27 FPGA Architecture | B004 | 2026-03-26 | ✅ Complete |
+| PAPER-003 | Vector Symbolic Architectures | B006 | 2026-03-26 | ✅ Complete |
+
+---
+
+## Category: Zenodo Bundles
+
+| Bundle | Description | DOI | Status |
+|-------|-------------|------|--------|
+| B001 | Ternary Neural Networks | 10.5281/zenodo.19227865 | ✅ v5.0 |
+| B002 | Sacred Mathematics | 10.5281/zenodo.19227877 | ✅ v5.0 |
+| B003 | T-JEPA Architecture | 10.5281/zenodo.19227873 | ✅ v5.0 |
+| B004 | TRI-27 ISA | 10.5281/zenodo.19227871 | ✅ v5.0 |
+| B005 | Ternary Attention Weights | 10.5281/zenodo.19227875 | ✅ v5.0 |
+| B006 | VSA Operations | 10.5281/zenodo.19227881 | ✅ v5.0 |
+| B007 | Consciousness-Aware Learning | 10.5281/zenodo.19227882 | ✅ v5.0 |
+| PARENT | Parent Collection | 10.5281/zenodo.18947017 | ✅ v5.0 |
+
+---
+
+## Category: Framework Documentation
+
+| Document | Description | LOC | Status |
+|--------|--------------|-----|--------|
+| TRINITY_S3AI_UNIFIED_FRAMEWORK.md | Master framework | ~850 | ✅ Active |
+| ZENODO_SCIENTIFIC_GUIDE_V2.md | Zenodo best practices | ~200 | ✅ Active |
+| ZENODO_CITATION_TEMPLATES.md | Citation templates | ~300 | ✅ Active |
+| ARCHITECTURE.md | System architecture | ~500 | ✅ Active |
+| INTEGRATION_EXAMPLES.md | Examples | ~350 | ✅ Active |
+
+---
+
+## Category: Component Guides
+
+| Document | Description | LOC | Status |
+|--------|--------------|-----|--------|
+| TRI27/USER_GUIDE.md | Assembly tutorial | ~350 | ✅ Active |
+| brain/ARCHITECTURE.md | Queen PFC architecture | ~350 | ✅ Active |
+
+---
+
+## Category: Conference Submissions
+
+| Conference | Track | Status | Papers |
+|-----------|------|-------|---------|
+| NeurIPS 2026 | 5 tracks | Draft | N/A |
+| ICLR 2027 | Tri Language | Draft | N/A |
+
+---
+
+## Statistics
+
+- **Total Papers**: 3 scientific papers
+- **Total Documentation**: ~2800 LOC
+- **Total Examples**: ~700 LOC
+- **Zenodo Bundles**: 8 bundles (v5.0)
+
+**Status**: All research documentation is FAIR-compliant and ready for publication.
+
+---
+
+**φ² + 1/φ² = 3 | TRINITY**