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docs(zenodo): Add v6.2 publication guide
- Updated bundle inventory with v6.2 file counts - Added statistical rigor checklist (CI, p-values, effect sizes) - Calibration metrics verification (ECE, Brier scores) - CLI integration commands for metadata generation - Conference readiness checklist (NeurIPS/ICLR/MLSys) (#435)
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‎docs/research/ZENODO_V6.2_PUBLICATION_GUIDE.md‎

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# Zenodo v6.2 Publication Guide
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**Date:** 2026-03-27
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**Version:** 6.2
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**Status:** Ready for Upload
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---
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## Quick Start
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```bash
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# 1. Create GitHub release tag v6.2.0
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gh release create v6.2.0 --title "v6.2.0 — Zenodo Publication" --notes "See Zenodo bundles"
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# 2. Upload to Zenodo Web UI (8 depositions)
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# Visit: https://zenodo.org/deposit
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```
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---
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## Bundle Inventory
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### Parent Collection
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| File | Description |
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|------|-------------|
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| `ZENODO_README.md` | Parent collection overview |
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| `.zenodo.PARENT_v6.2.json` | Metadata (DOI: 10.5281/zenodo.19227879) |
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### Individual Bundles (7)
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| Bundle | DOI | Files | LOC | Description |
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|--------|-----|-------|-----|-------------|
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| **B001** | 10.5281/zenodo.19227865 | 5 figures, 1 CSV | 520+ | HSLM Language Model |
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| **B002** | 10.5281/zenodo.19227867 | 2 figures, 1 CSV | 470+ | FPGA Zero-DSP |
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| **B003** | 10.5281/zenodo.19227869 | 1 figure, 1 CSV | 480+ | TRI-27 Ternary ISA |
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| **B004** | 10.5281/zenodo.19227739 | 1 figure, 1 CSV | 450+ | Lotus Orchestration |
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| **B005** | 10.5281/zenodo.19227741 | 1 figure, 1 CSV | 480+ | VIBEE Code Gen |
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| **B006** | 10.5281/zenodo.19227743 | 2 figures, 1 CSV | 420+ | Sacred Formats |
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| **B007** | 10.5281/zenodo.19227745 | 2 figures, 2 CSV | 460+ | VSA Vector Symbolic |
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**Total LOC:** ~3280 lines across 7 bundles
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---
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## What's New in v6.2
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### Enhanced Scientific Documentation
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- ✅ **Statistical Rigor**: 95% confidence intervals, p-values, effect sizes
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- ✅ **Calibration Metrics**: ECE, Brier score, reliability diagrams
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- ✅ **Algorithm Boxes**: NeurIPS/ICLR compliant pseudocode
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- ✅ **Hyperparameter Tables**: Complete with ablation results
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- ✅ **Dataset Documentation**: Preprocessing, splits, provenance
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### Format Improvements
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- ✅ **LaTeX + Markdown**: Dual format for all bundles
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- ✅ **Code Listings**: Syntax-highlighted Zig examples
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- ✅ **Multi-Panel Figures**: Subfigure layouts with captions
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- ✅ **Mathematical Proofs**: Theorem statements with formal verification
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---
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## Upload Procedure (Web UI)
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### Step 1: Parent Collection
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1. Visit https://zenodo.org/deposit
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2. Select "New upload"
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3. Upload `ZENODO_README.md`
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4. Copy metadata from `.zenodo.PARENT_v6.2.json`
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5. **DOI:** 10.5281/zenodo.19227879
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6. Publish
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### Step 2: Individual Bundles
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For each bundle (B001-B007):
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1. **Files to Upload:**
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```
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zenodo_B{XXX}_enhanced_v6.2.md
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figures/B{XXX}-Fig*.png
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figures/B{XXX}-Fig*.svg
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data/B{XXX}_*.csv
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docker/Dockerfile.B{XXX}
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.zenodo.B{XXX}_v6.2.json
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```
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2. **Metadata:**
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- Copy from `.zenodo.B{XXX}_v6.2.json`
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- Verify ORCID: 0000-0000-0000-0000
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- Check keywords (MeSH + ACM CCS)
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3. **DOI Assignment:**
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- Use existing DOIs from v5.0 → v6.2 upgrade
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- Or create new version of existing deposition
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---
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## Verification Checklist
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Before publishing each bundle:
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- [ ] Title matches `.zenodo.json`
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- [ ] Authors: Dmitrii Vasilev (ORCID: 0000-0000-0000-0000)
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- [ ] Affiliation: Trinity Research Collective
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- [ ] License: CC-BY-4.0
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- [ ] Version: 6.2
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- [ ] Keywords present (11-14 terms)
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- [ ] Related identifiers point to parent DOI
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- [ ] Community: neurips, iclr, mlsys
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- [ ] Figures uploaded (PNG + SVG)
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- [ ] Data files uploaded (CSV)
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- [ ] Code availability section present
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- [ ] Build instructions tested
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- [ ] Statistical analysis complete (CI, p-values, effect sizes)
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- [ ] Algorithm boxes present
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- [ ] Calibration metrics included
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---
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## Post-Publication
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1. **Verify DOIs:**
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```bash
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for doi in 19227865 19227867 19227869 19227739 19227741 19227743 19227745 19227879; do
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curl -L "https://doi.org/10.5281/zenodo.$doi"
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done
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```
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2. **Update README.md:**
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```markdown
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## Citation
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```bibtex
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@misc{vasilev2026trinity,
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title={Trinity S³AI Framework v6.2},
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author={Vasilev, Dmitrii},
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year={2026},
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month={March},
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doi={10.5281/zenodo.19227879},
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url={https://doi.org/10.5281/zenodo.19227879}
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}
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```
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```
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3. **Close Issue #435:**
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```bash
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gh issue close 435 --comment "✅ Zenodo v6.2 published. DOIs: https://doi.org/10.5281/zenodo.19227879"
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```
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---
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## Asset Manifest
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### Figures (28 files)
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```
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figures/B001-Fig1_training_curve.{png,svg}
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figures/B001-Fig2_format_comparison.{png,svg}
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figures/B001-Fig3_fpga_resources.{png,svg}
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figures/B001-Fig4_attention_heatmap.{png,svg}
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figures/B001-Fig5_scaling_laws.{png,svg}
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figures/B002-Fig1_fpga_resources.{png,svg}
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figures/B002-Fig2_power_analysis.{png,svg}
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figures/B003-Fig1_register_layout.{png,svg}
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figures/B004-Fig1_lotus_cycle.{png,svg}
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figures/B005-Fig1_type_hierarchy.{png,svg}
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figures/B006-Fig1_gf16_layout.{png,svg}
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figures/B006-Fig2_phi_heatmap.{png,svg}
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figures/B007-Fig1_vsa_structure.{png,svg}
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figures/B007-Fig2_simd_speedup.{png,svg}
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```
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### Data (10 files)
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```
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data/B001_training.csv
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data/B002_fpga_synthesis.csv
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data/B003_tri27_registers.csv
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data/B004_lotus_cycle.csv
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data/B005_language_features.csv
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data/B005_productivity.csv
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data/B006_gf16_accuracy.csv
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data/B006_roundtrip_precision.csv
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data/B007_noise_resilience.csv
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data/B007_simd_benchmarks.csv
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```
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### Dockerfiles (7 files)
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```
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docker/Dockerfile.B001
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docker/Dockerfile.B002
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docker/Dockerfile.B003
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docker/Dockerfile.B004
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docker/Dockerfile.B005
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docker/Dockerfile.B006
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docker/Dockerfile.B007
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```
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### Metadata (8 files)
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```
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.zenodo.PARENT_v6.2.json
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.zenodo.B001_v6.2.json
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.zenodo.B002_v6.2.json
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.zenodo.B003_v6.2.json
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.zenodo.B004_v6.2.json
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.zenodo.B005_v6.2.json
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.zenodo.B006_v6.2.json
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.zenodo.B007_v6.2.json
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```
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---
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## Conference Submission Readiness
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### NeurIPS 2026
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- ✅ Abstract (5-sentence format)
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- ✅ Algorithm boxes
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- ✅ Statistical analysis (95% CI, p-values)
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- ✅ Broader Impact statement
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- ✅ Limitations section
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- ✅ Code availability
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- ✅ Calibration metrics
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### ICLR 2027
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- ✅ Open data policy (CSV files)
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- ✅ Reproducibility (Dockerfiles)
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- ✅ Code review checklist
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- ✅ Experimental protocol
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- ✅ Hyperparameter tables
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### MLSys 2025
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- ✅ System description
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- ✅ Performance benchmarks
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- ✅ Resource utilization
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- ✅ Scalability analysis
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---
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## CLI Integration
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Generate bundle metadata and upload scripts:
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```bash
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# Generate all bundle metadata
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tri zenodo generate --version 6.2
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# Create parent collection metadata
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tri zenodo parent --version 6.2
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# Verify bundle completeness
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tri zenodo verify B001 B002 B003 B004 B005 B006 B007
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# Generate upload checklist
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tri zenodo checklist --version 6.2
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```
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---
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**φ² + 1/φ² = 3 | TRINITY**

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