Merge pull request #639 from nsoranzo/drop_pkg_resources

Drop use of pkg_resources

Author: nsoranzo

deprecated/tools/annotation_profiler/scripts/build_profile_indexes.py

@@ -13,12 +13,6 @@
 except ImportError:
     from md5 import new as md5
 
-#import BitSet from bx-python, try using eggs and package resources, fall back to any local installation
-try:
-    from galaxy import eggs
-    import pkg_resources
-    pkg_resources.require( "bx-python" )
-except: pass #Maybe there is a local installation available
 from bx.bitset import BitSet
 
 #Define constants

tool_collections/taxonomy/find_diag_hits/find_diag_hits.py

@@ -42,9 +42,6 @@
 
 """
 
-from galaxy import eggs
-import pkg_resources
-pkg_resources.require( 'pysqlite' )
 from pysqlite2 import dbapi2 as sqlite
 import string, sys, tempfile
 

tools/lastz_paired_reads/lastz_paired_reads_wrapper.py

@@ -41,9 +41,6 @@
 import optparse, os, subprocess, shutil, sys, tempfile, time
 from string import maketrans
 
-from galaxy import eggs
-import pkg_resources
-pkg_resources.require( 'bx-python' )
 from bx.seq.twobit import *
 from bx.seq.fasta import FastaReader
 from galaxy.util.bunch import Bunch

tools/quality_filter/quality_filter.py

@@ -8,10 +8,6 @@
 
 
 from __future__ import division
-from galaxy import eggs
-import pkg_resources
-pkg_resources.require( "lrucache" )
-import numpy
 
 import sys
 import os, os.path