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Drop use of pkg_resources #639

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Merged
nsoranzo merged 1 commit into from
Feb 16, 2026
Merged

Drop use of pkg_resources #639

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6 changes: 0 additions & 6 deletions deprecated/tools/annotation_profiler/scripts/build_profile_indexes.py
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Expand Up @@ -13,12 +13,6 @@
except ImportError:
from md5 import new as md5

#import BitSet from bx-python, try using eggs and package resources, fall back to any local installation
try:
from galaxy import eggs
import pkg_resources
pkg_resources.require( "bx-python" )
except: pass #Maybe there is a local installation available
from bx.bitset import BitSet

#Define constants
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3 changes: 0 additions & 3 deletions tool_collections/taxonomy/find_diag_hits/find_diag_hits.py
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Expand Up @@ -42,9 +42,6 @@

"""

from galaxy import eggs
import pkg_resources
pkg_resources.require( 'pysqlite' )
from pysqlite2 import dbapi2 as sqlite
import string, sys, tempfile

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3 changes: 0 additions & 3 deletions tools/lastz_paired_reads/lastz_paired_reads_wrapper.py
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Expand Up @@ -41,9 +41,6 @@
import optparse, os, subprocess, shutil, sys, tempfile, time
from string import maketrans

from galaxy import eggs
import pkg_resources
pkg_resources.require( 'bx-python' )
from bx.seq.twobit import *
from bx.seq.fasta import FastaReader
from galaxy.util.bunch import Bunch
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4 changes: 0 additions & 4 deletions tools/quality_filter/quality_filter.py
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Expand Up @@ -8,10 +8,6 @@


from __future__ import division
from galaxy import eggs
import pkg_resources
pkg_resources.require( "lrucache" )
import numpy

import sys
import os, os.path
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