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2 changes: 1 addition & 1 deletion configs/model/cell/can.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,7 @@ readout:
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/cell/cccn.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@ readout:
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/cell/ccxn.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@ readout:
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/cell/cwn.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@ readout:
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/cell/topotune.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@ readout:
num_cell_dimensions: ${infer_topotune_num_cell_dimensions:${oc.select:model.backbone.neighborhoods}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/cell/topotune_onehasse.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -46,7 +46,7 @@ readout:
num_cell_dimensions: ${infer_topotune_num_cell_dimensions:${oc.select:model.backbone.neighborhoods}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/combinatorial/topotune.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@ readout:
num_cell_dimensions: ${infer_topotune_num_cell_dimensions:${oc.select:model.backbone.neighborhoods}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/graph/gat.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@ readout:
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/graph/gcn.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@ readout:
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/graph/gcn_dgm.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@ readout:
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/graph/gin.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@ readout:
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/graph/gps.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@ readout:
in_channels: ${model.feature_encoder.out_channels}
hidden_layers: [16]
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum
# Extra MLP params
dropout: 0.2
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2 changes: 1 addition & 1 deletion configs/model/graph/graph_mlp.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@ readout:
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum


Expand Down
2 changes: 1 addition & 1 deletion configs/model/graph/nsd.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@ readout:
in_channels: ${model.feature_encoder.out_channels}
hidden_layers: [16]
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum
# Extra MLP params
dropout: 0.2
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2 changes: 1 addition & 1 deletion configs/model/hypergraph/alldeepset.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@ readout:
num_cell_dimensions: 1 # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/hypergraph/allsettransformer.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,7 @@ readout:
num_cell_dimensions: 1 # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/hypergraph/edgnn.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@ readout:
num_cell_dimensions: 1 # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/hypergraph/unignn.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@ readout:
num_cell_dimensions: 1 # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/hypergraph/unignn2.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,7 @@ readout:
num_cell_dimensions: 1
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/non_relational/mlp.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@ readout:
readout_name: NoReadOut
hidden_dim: ${model.backbone.out_channels}
out_channels: ${model.backbone.out_channels}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum
logits_linear_layer: false

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2 changes: 1 addition & 1 deletion configs/model/pointcloud/deepset.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@ readout:
in_channels: ${model.feature_encoder.out_channels}
hidden_layers: [64,32]
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum
# Extra MLP params
dropout: 0.0
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2 changes: 1 addition & 1 deletion configs/model/simplicial/san.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@ readout:
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/simplicial/sccn.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@ readout:
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/simplicial/sccnn.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -43,7 +43,7 @@ readout:
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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2 changes: 1 addition & 1 deletion configs/model/simplicial/sccnn_custom.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -43,7 +43,7 @@ readout:
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
Expand Down
2 changes: 1 addition & 1 deletion configs/model/simplicial/scn.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,7 @@ readout:
num_cell_dimensions: ${infer_num_cell_dimensions:${oc.select:model.feature_encoder.selected_dimensions,null},${model.feature_encoder.in_channels}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
Expand Down
2 changes: 1 addition & 1 deletion configs/model/simplicial/topotune.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@ readout:
num_cell_dimensions: ${infer_topotune_num_cell_dimensions:${oc.select:model.backbone.neighborhoods}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
Expand Down
2 changes: 1 addition & 1 deletion configs/model/simplicial/topotune_onehasse.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -46,7 +46,7 @@ readout:
num_cell_dimensions: ${infer_topotune_num_cell_dimensions:${oc.select:model.backbone.neighborhoods}} # The highest order of cell dimensions to consider
hidden_dim: ${model.feature_encoder.out_channels}
out_channels: ${dataset.parameters.num_classes}
task_level: ${dataset.parameters.task_level}
task_level: ${define_task_level:${dataset.parameters.task_level},${dataset.split_params.learning_setting}} # Handles the edge case of node-inductive task
pooling_type: sum

# compile model for faster training with pytorch 2.0
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3 changes: 0 additions & 3 deletions configs/run.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -31,9 +31,6 @@ defaults:
# debugging config (enable through command line, e.g. `python train.py debug=default)
- debug: null

# evaluator: ${dataset.parameters.task}
# callbacks: ${dataset.parameters.task}

# task name, determines output directory path
task_name: "train"

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Empty file added test/model/__init__.py
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