adata_science_tools/example_simulated_data/config/config.yaml at main · gitbenlewis/adata_science_tools · GitHub

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########################################## directory specific configs ##########################################


simulate_1_var_covar_age_params:
  repo_results_dir: /home/ubuntu/projects/gitbenlewis/adata_science_tools/example_simulated_data/results/simulate_1_var_covar_age/
  default_params:
    n_obs: 100
    obs_names_prefix: obs_
    random_seed: 7
    age_mean: 50.0
    age_stdev: 10.0
    beta: 0.05
    case_control_prob: 0.5
    beta_case_control: 2.0
    yint: 10.0
    residual_mean: 0.0
    residual_stdev: 1.0
    var_name: simulated_feature
    save_obs_df: false
    save_adata_dataset: true
    also_return_adata: true

  simulate_1_var_covar_age__runs:
    baseline:
      run: true
    older_shift:
      run: false
      age_mean: 65.0
      beta: 0.10
    stronger_case_effect:
      run: false
      beta_case_control: 1.0


plot_dotplot_simulate_1_var_covar_age_params:
  repo_results_dir: /home/ubuntu/projects/gitbenlewis/adata_science_tools/example_simulated_data/results/plot_dotplot_simulate_1_var_covar_age/
  default_params:
    layer: null
    column_key_x: Age
    column_key_y: simulated_feature
    hue: case_control
    subset_key: case_control
    axes_title: simulated_feature vs Age
    show: false
    save_plot: true
    axes_lines: false
    figsize: [12, 8]
    dropna: true
    show_y_intercept: false
    palette: ['#AA4499', '#332288', '#1f77b4', '#661100', '#117733', '#ff7f0e']
    subset_palette: ['#AA4499', '#332288', '#1f77b4', '#661100', '#117733', '#ff7f0e']
    dot_size: 200
    title_fontsize: 16
    axis_label_fontsize: 12
    legend_fontsize: 12
    show_all_obs_fit: true
    show_stats_text: false
    show_x_marginal_hist: true
    show_y_marginal_hist: true
    x_marginal_hist_bins: 10
    y_marginal_hist_bins: 10
    x_marginal_hist_height_ratio: 0.3
    y_marginal_hist_width_ratio: 0.3
    dpi: 300
    bbox_inches: tight

  plot_dotplot_simulate_1_var_covar_age__runs:
    baseline:
      run: true