test_integration_subcommand.py

"""Tests for ``specify integration`` subcommand (list, install, uninstall, switch)."""

import json
import os

import pytest
from typer.testing import CliRunner

from specify_cli import app


runner = CliRunner()


def _init_project(tmp_path, integration="copilot"):
    """Helper: init a spec-kit project with the given integration."""
    project = tmp_path / "proj"
    project.mkdir()
    old_cwd = os.getcwd()
    try:
        os.chdir(project)
        result = runner.invoke(app, [
            "init", "--here",
            "--integration", integration,
            "--script", "sh",
            "--no-git",
            "--ignore-agent-tools",
        ], catch_exceptions=False)
    finally:
        os.chdir(old_cwd)
    assert result.exit_code == 0, f"init failed: {result.output}"
    return project


def _run_in_project(project, args):
    """Run a CLI command from inside a generated project."""
    old_cwd = os.getcwd()
    try:
        os.chdir(project)
        return runner.invoke(app, args, catch_exceptions=False)
    finally:
        os.chdir(old_cwd)


def _write_invalid_manifest(project, key):
    manifest = project / ".specify" / "integrations" / f"{key}.manifest.json"
    manifest.write_bytes(b"\xff\xfe\x00")
    return manifest


def _integration_list_row_cells(output: str, key: str) -> list[str]:
    row = next(line for line in output.splitlines() if line.startswith(f"│ {key}"))
    return [cell.strip() for cell in row.split("│")[1:-1]]


# ── list ─────────────────────────────────────────────────────────────


class TestIntegrationList:
    def test_list_requires_speckit_project(self, tmp_path):
        old_cwd = os.getcwd()
        try:
            os.chdir(tmp_path)
            result = runner.invoke(app, ["integration", "list"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "Not a spec-kit project" in result.output

    def test_list_shows_installed(self, tmp_path):
        project = _init_project(tmp_path, "copilot")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "list"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0
        assert "copilot" in result.output
        assert "installed" in result.output

    def test_list_shows_available_integrations(self, tmp_path):
        project = _init_project(tmp_path, "copilot")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "list"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0
        # Should show multiple integrations
        assert "claude" in result.output
        assert "gemini" in result.output

    def test_list_shows_multi_install_safe_status(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "list"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0
        assert "Multi-install" in result.output
        assert "Safe" in result.output
        assert _integration_list_row_cells(result.output, "claude")[-1] == "yes"
        assert _integration_list_row_cells(result.output, "copilot")[-1] == "no"

    def test_list_rejects_newer_integration_state_schema(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        int_json = project / ".specify" / "integration.json"
        data = json.loads(int_json.read_text(encoding="utf-8"))
        data["integration_state_schema"] = 99
        int_json.write_text(json.dumps(data), encoding="utf-8")

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "list"])
        finally:
            os.chdir(old_cwd)

        assert result.exit_code != 0
        normalized = " ".join(result.output.split())
        assert "schema 99" in normalized
        assert "only supports schema 1" in normalized


# ── install ──────────────────────────────────────────────────────────


class TestIntegrationInstall:
    def test_install_requires_speckit_project(self, tmp_path):
        old_cwd = os.getcwd()
        try:
            os.chdir(tmp_path)
            result = runner.invoke(app, ["integration", "install", "claude"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "Not a spec-kit project" in result.output

    def test_install_unknown_integration(self, tmp_path):
        project = _init_project(tmp_path)
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "install", "nonexistent"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "Unknown integration" in result.output

    def test_install_already_installed(self, tmp_path):
        project = _init_project(tmp_path, "copilot")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "install", "copilot"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0
        assert "already installed" in result.output
        normalized = " ".join(result.output.split())
        assert "specify integration upgrade copilot" in normalized
        assert "already the default integration" in normalized
        assert "No files were changed" in normalized
        assert "specify integration uninstall copilot" not in normalized

    def test_install_already_installed_non_default_guides_use(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            install = runner.invoke(app, [
                "integration", "install", "codex",
                "--script", "sh",
            ], catch_exceptions=False)
            assert install.exit_code == 0, install.output

            result = runner.invoke(app, ["integration", "install", "codex"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0
        normalized = " ".join(result.output.split())
        assert "already installed" in normalized
        assert "specify integration use codex" in normalized
        assert "specify integration upgrade codex" in normalized
        assert "specify integration uninstall codex" not in normalized

    def test_install_different_when_one_exists(self, tmp_path):
        project = _init_project(tmp_path, "copilot")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "install", "claude"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "Installed integrations: copilot" in result.output
        assert "Default integration: copilot" in result.output
        normalized = " ".join(result.output.split())
        assert "To replace the default integration" in normalized
        assert "specify integration switch claude" in normalized
        assert "To install 'claude' alongside" in normalized
        assert "retry the same install command with --force" in normalized

    def test_install_multi_safe_integration(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "install", "codex",
                "--script", "sh",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0, result.output
        assert "installed successfully" in result.output

        data = json.loads((project / ".specify" / "integration.json").read_text(encoding="utf-8"))
        assert data["integration"] == "claude"
        assert data["default_integration"] == "claude"
        assert data["integration_state_schema"] == 1
        assert data["installed_integrations"] == ["claude", "codex"]
        assert data["integration_settings"]["claude"]["invoke_separator"] == "-"
        assert data["integration_settings"]["codex"]["invoke_separator"] == "-"

        assert (project / ".claude" / "skills" / "speckit-plan" / "SKILL.md").exists()
        assert (project / ".agents" / "skills" / "speckit-plan" / "SKILL.md").exists()

    def test_install_non_default_refreshes_init_options_version_only(self, tmp_path, monkeypatch):
        project = _init_project(tmp_path, "claude")
        init_options = project / ".specify" / "init-options.json"
        opts = json.loads(init_options.read_text(encoding="utf-8"))
        opts["speckit_version"] = "0.6.1"
        init_options.write_text(json.dumps(opts), encoding="utf-8")

        import specify_cli

        monkeypatch.setattr(specify_cli, "get_speckit_version", lambda: "0.8.11")

        result = _run_in_project(project, [
            "integration", "install", "codex",
            "--script", "sh",
        ])

        assert result.exit_code == 0, result.output
        updated = json.loads(init_options.read_text(encoding="utf-8"))
        assert updated["speckit_version"] == "0.8.11"
        assert updated["integration"] == "claude"
        assert updated["ai"] == "claude"
        assert updated["context_file"] == "CLAUDE.md"

    def test_install_additional_preserves_shared_manifest(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        shared_manifest = project / ".specify" / "integrations" / "speckit.manifest.json"
        before = set(json.loads(shared_manifest.read_text(encoding="utf-8"))["files"])
        assert before

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "install", "codex",
                "--script", "sh",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0, result.output

        after = set(json.loads(shared_manifest.read_text(encoding="utf-8"))["files"])
        assert before <= after

    def test_install_multi_safe_migrates_legacy_state(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        int_json = project / ".specify" / "integration.json"
        int_json.write_text(json.dumps({
            "integration": "claude",
            "version": "0.0.0",
        }), encoding="utf-8")

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "install", "codex",
                "--script", "sh",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0, result.output

        data = json.loads(int_json.read_text(encoding="utf-8"))
        assert data["integration"] == "claude"
        assert data["default_integration"] == "claude"
        assert data["installed_integrations"] == ["claude", "codex"]

    def test_install_multi_unsafe_requires_force(self, tmp_path):
        project = _init_project(tmp_path, "copilot")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "install", "claude",
                "--script", "sh",
            ])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "Installed integrations: copilot" in result.output
        assert "multi-install safe" in result.output
        normalized = " ".join(result.output.split())
        assert "To replace the default integration" in normalized
        assert "specify integration switch claude" in normalized
        assert "To install 'claude' alongside" in normalized
        assert "retry the same install command with --force" in normalized

    def test_install_multi_unsafe_allowed_with_force(self, tmp_path):
        project = _init_project(tmp_path, "copilot")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "install", "claude",
                "--script", "sh",
                "--force",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0, result.output

        data = json.loads((project / ".specify" / "integration.json").read_text(encoding="utf-8"))
        assert data["integration"] == "copilot"
        assert data["installed_integrations"] == ["copilot", "claude"]

    def test_install_into_bare_project(self, tmp_path):
        """Install into a project with .specify/ but no integration."""
        project = tmp_path / "bare"
        project.mkdir()
        (project / ".specify").mkdir()
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "install", "claude",
                "--script", "sh",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0, result.output
        assert "installed successfully" in result.output

        # integration.json written
        data = json.loads((project / ".specify" / "integration.json").read_text(encoding="utf-8"))
        assert data["integration"] == "claude"

        # Manifest created
        assert (project / ".specify" / "integrations" / "claude.manifest.json").exists()

        # Claude uses skills directory (not commands)
        assert (project / ".claude" / "skills" / "speckit-plan" / "SKILL.md").exists()

    def test_install_bare_project_gets_shared_infra(self, tmp_path):
        """Installing into a bare project should create shared scripts and templates."""
        project = tmp_path / "bare"
        project.mkdir()
        (project / ".specify").mkdir()
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "install", "claude",
                "--script", "sh",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0, result.output

        # Shared infrastructure should be present
        assert (project / ".specify" / "scripts").is_dir()
        assert (project / ".specify" / "templates").is_dir()


# ── uninstall ────────────────────────────────────────────────────────


class TestIntegrationUninstall:
    def test_uninstall_requires_speckit_project(self, tmp_path):
        old_cwd = os.getcwd()
        try:
            os.chdir(tmp_path)
            result = runner.invoke(app, ["integration", "uninstall"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "Not a spec-kit project" in result.output

    def test_uninstall_no_integration(self, tmp_path):
        project = tmp_path / "proj"
        project.mkdir()
        (project / ".specify").mkdir()
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "uninstall"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0
        assert "No integration" in result.output

    def test_uninstall_removes_files(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        # Claude uses skills directory
        assert (project / ".claude" / "skills" / "speckit-plan" / "SKILL.md").exists()
        assert (project / ".specify" / "integrations" / "claude.manifest.json").exists()

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "uninstall"], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0
        assert "uninstalled" in result.output

        # Command files removed
        assert not (project / ".claude" / "skills" / "speckit-plan" / "SKILL.md").exists()

        # Manifest removed
        assert not (project / ".specify" / "integrations" / "claude.manifest.json").exists()

        # integration.json removed
        assert not (project / ".specify" / "integration.json").exists()

    def test_uninstall_preserves_modified_files(self, tmp_path):
        """Full lifecycle: install → modify → uninstall → modified file kept."""
        project = _init_project(tmp_path, "claude")
        plan_file = project / ".claude" / "skills" / "speckit-plan" / "SKILL.md"
        assert plan_file.exists()

        # Modify a file
        plan_file.write_text("# My custom plan command\n", encoding="utf-8")

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "uninstall"], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0
        assert "preserved" in result.output
        assert ".claude/skills/speckit-plan/SKILL.md" in result.output

        # Modified file kept
        assert plan_file.exists()
        assert plan_file.read_text(encoding="utf-8") == "# My custom plan command\n"

    def test_uninstall_wrong_key(self, tmp_path):
        project = _init_project(tmp_path, "copilot")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "uninstall", "claude"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "not installed" in result.output

    def test_uninstall_invalid_manifest_reports_cli_error(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        _write_invalid_manifest(project, "claude")

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "uninstall", "claude"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "manifest" in result.output
        assert "unreadable" in result.output

    def test_uninstall_non_default_preserves_default(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            install = runner.invoke(app, [
                "integration", "install", "codex",
                "--script", "sh",
            ], catch_exceptions=False)
            assert install.exit_code == 0, install.output

            result = runner.invoke(app, [
                "integration", "uninstall", "codex",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0, result.output
        assert not (project / ".agents" / "skills" / "speckit-plan" / "SKILL.md").exists()
        assert (project / ".claude" / "skills" / "speckit-plan" / "SKILL.md").exists()

        data = json.loads((project / ".specify" / "integration.json").read_text(encoding="utf-8"))
        assert data["integration"] == "claude"
        assert data["installed_integrations"] == ["claude"]

    def test_uninstall_default_refreshes_templates_for_fallback(self, tmp_path):
        project = _init_project(tmp_path, "gemini")
        template = project / ".specify" / "templates" / "plan-template.md"
        assert "/speckit.plan" in template.read_text(encoding="utf-8")

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            install = runner.invoke(app, [
                "integration", "install", "claude",
                "--script", "sh",
            ], catch_exceptions=False)
            assert install.exit_code == 0, install.output

            result = runner.invoke(app, ["integration", "uninstall", "gemini"], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0, result.output

        data = json.loads((project / ".specify" / "integration.json").read_text(encoding="utf-8"))
        assert data["integration"] == "claude"
        assert "/speckit-plan" in template.read_text(encoding="utf-8")

    def test_uninstall_preserves_shared_infra(self, tmp_path):
        """Shared scripts and templates are not removed by integration uninstall."""
        project = _init_project(tmp_path, "claude")
        shared_script = project / ".specify" / "scripts" / "bash" / "common.sh"
        assert shared_script.exists()

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "uninstall"], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0

        # Shared infrastructure preserved
        assert shared_script.exists()
        assert (project / ".specify" / "templates").is_dir()


class TestIntegrationUse:
    def test_use_installed_integration_sets_default(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            install = runner.invoke(app, [
                "integration", "install", "codex",
                "--script", "sh",
            ], catch_exceptions=False)
            assert install.exit_code == 0, install.output

            result = runner.invoke(app, ["integration", "use", "codex"], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0, result.output

        data = json.loads((project / ".specify" / "integration.json").read_text(encoding="utf-8"))
        assert data["integration"] == "codex"
        assert data["default_integration"] == "codex"
        assert data["installed_integrations"] == ["claude", "codex"]

        opts = json.loads((project / ".specify" / "init-options.json").read_text(encoding="utf-8"))
        assert opts["integration"] == "codex"
        assert opts["ai"] == "codex"

    def test_use_requires_installed_integration(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "use", "codex"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "not installed" in result.output

    def test_use_refreshes_shared_templates_between_command_styles(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        template = project / ".specify" / "templates" / "plan-template.md"
        assert "/speckit-plan" in template.read_text(encoding="utf-8")

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            install = runner.invoke(app, [
                "integration", "install", "gemini",
                "--script", "sh",
            ], catch_exceptions=False)
            assert install.exit_code == 0, install.output

            use_gemini = runner.invoke(app, ["integration", "use", "gemini"], catch_exceptions=False)
            assert use_gemini.exit_code == 0, use_gemini.output
            assert "/speckit.plan" in template.read_text(encoding="utf-8")

            use_claude = runner.invoke(app, ["integration", "use", "claude"], catch_exceptions=False)
            assert use_claude.exit_code == 0, use_claude.output
            assert "/speckit-plan" in template.read_text(encoding="utf-8")
        finally:
            os.chdir(old_cwd)

    def test_use_preserves_modified_templates_unless_forced(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        template = project / ".specify" / "templates" / "plan-template.md"
        template.write_text("custom template with /speckit-plan\n", encoding="utf-8")

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            install = runner.invoke(app, [
                "integration", "install", "gemini",
                "--script", "sh",
            ], catch_exceptions=False)
            assert install.exit_code == 0, install.output

            use_gemini = runner.invoke(app, ["integration", "use", "gemini"], catch_exceptions=False)
            assert use_gemini.exit_code == 0, use_gemini.output
            assert template.read_text(encoding="utf-8") == "custom template with /speckit-plan\n"

            force_use = runner.invoke(app, [
                "integration", "use", "gemini",
                "--force",
            ], catch_exceptions=False)
            assert force_use.exit_code == 0, force_use.output
        finally:
            os.chdir(old_cwd)

        updated = template.read_text(encoding="utf-8")
        assert "/speckit.plan" in updated
        assert "custom template" not in updated

    @pytest.mark.skipif(not hasattr(os, "symlink"), reason="symlinks are unavailable")
    def test_use_does_not_persist_default_when_template_refresh_fails(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        int_json = project / ".specify" / "integration.json"
        init_options = project / ".specify" / "init-options.json"

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            install = runner.invoke(app, [
                "integration", "install", "codex",
                "--script", "sh",
            ], catch_exceptions=False)
            assert install.exit_code == 0, install.output

            before_state = json.loads(int_json.read_text(encoding="utf-8"))
            before_options = json.loads(init_options.read_text(encoding="utf-8"))

            outside = tmp_path / "outside-template.md"
            outside.write_text("# outside\n", encoding="utf-8")
            template = project / ".specify" / "templates" / "plan-template.md"
            template.unlink()
            os.symlink(outside, template)

            result = runner.invoke(app, [
                "integration", "use", "codex",
                "--force",
            ])
        finally:
            os.chdir(old_cwd)

        assert result.exit_code != 0
        assert "Failed to refresh shared templates" in result.output
        assert json.loads(int_json.read_text(encoding="utf-8")) == before_state
        assert json.loads(init_options.read_text(encoding="utf-8")) == before_options
        assert outside.read_text(encoding="utf-8") == "# outside\n"


# ── switch ───────────────────────────────────────────────────────────


class TestIntegrationSwitch:
    def test_switch_requires_speckit_project(self, tmp_path):
        old_cwd = os.getcwd()
        try:
            os.chdir(tmp_path)
            result = runner.invoke(app, ["integration", "switch", "claude"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "Not a spec-kit project" in result.output

    def test_switch_unknown_target(self, tmp_path):
        project = _init_project(tmp_path)
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "switch", "nonexistent"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "Unknown integration" in result.output

    def test_switch_invalid_current_manifest_reports_cli_error(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        _write_invalid_manifest(project, "claude")

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "switch", "codex",
                "--script", "sh",
            ])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "Could not read integration manifest" in result.output

    def test_switch_same_noop(self, tmp_path):
        project = _init_project(tmp_path, "copilot")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "switch", "copilot"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0
        assert "already the default integration" in result.output

    def test_switch_same_force_refreshes_shared_templates(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        template = project / ".specify" / "templates" / "plan-template.md"
        template.write_text("# custom shared template\n", encoding="utf-8")

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "switch", "claude",
                "--force",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0, result.output
        assert "managed shared templates refreshed" in result.output
        assert "/speckit-plan" in template.read_text(encoding="utf-8")

    def test_switch_installed_target_rejects_integration_options(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            install = runner.invoke(app, [
                "integration", "install", "codex",
                "--script", "sh",
            ], catch_exceptions=False)
            assert install.exit_code == 0, install.output

            result = runner.invoke(app, [
                "integration", "switch", "codex",
                "--integration-options", "--bogus",
            ])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "--integration-options cannot be used" in result.output

        data = json.loads((project / ".specify" / "integration.json").read_text(encoding="utf-8"))
        assert data["default_integration"] == "claude"

    def test_switch_between_integrations(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        # Verify claude files exist (claude uses skills)
        assert (project / ".claude" / "skills" / "speckit-plan" / "SKILL.md").exists()

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "switch", "copilot",
                "--script", "sh",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0, result.output
        assert "Switched to" in result.output

        # Old claude files removed
        assert not (project / ".claude" / "skills" / "speckit-plan" / "SKILL.md").exists()

        # New copilot files created
        assert (project / ".github" / "agents" / "speckit.plan.agent.md").exists()

        # integration.json updated
        data = json.loads((project / ".specify" / "integration.json").read_text(encoding="utf-8"))
        assert data["integration"] == "copilot"

    def test_switch_migrates_extension_commands(self, tmp_path):
        """Switching should migrate extension commands to the new agent directory."""
        project = _init_project(tmp_path, "kimi")

        # Install the bundled git extension
        result = _run_in_project(project, ["extension", "add", "git"])
        assert result.exit_code == 0, f"extension add failed: {result.output}"

        # Verify git extension skills exist for kimi
        kimi_git_feature = project / ".kimi" / "skills" / "speckit-git-feature" / "SKILL.md"
        assert kimi_git_feature.exists(), "Git extension skill should exist for kimi"

        result = _run_in_project(project, [
            "integration", "switch", "opencode",
            "--script", "sh",
        ])
        assert result.exit_code == 0, result.output

        # Git extension commands should exist for opencode
        opencode_git_feature = project / ".opencode" / "commands" / "speckit.git.feature.md"
        assert opencode_git_feature.exists(), "Git extension command should exist for opencode"

        # Old kimi extension skills should be removed
        assert not kimi_git_feature.exists(), "Old kimi extension skill should be removed"

        # Extension registry should be updated
        registry = json.loads(
            (project / ".specify" / "extensions" / ".registry").read_text(encoding="utf-8")
        )
        registered_commands = registry["extensions"]["git"]["registered_commands"]
        assert "opencode" in registered_commands
        assert "kimi" not in registered_commands

        # Switch to claude
        result = _run_in_project(project, [
            "integration", "switch", "claude",
            "--script", "sh",
        ])
        assert result.exit_code == 0, result.output

        # Git extension skills should exist for claude
        claude_git_feature = project / ".claude" / "skills" / "speckit-git-feature" / "SKILL.md"
        assert claude_git_feature.exists(), "Git extension skill should exist for claude"

        # Old opencode extension commands should be removed
        assert not opencode_git_feature.exists(), "Old opencode extension command should be removed"

        # Extension registry should be updated
        registry = json.loads(
            (project / ".specify" / "extensions" / ".registry").read_text(encoding="utf-8")
        )
        registered_commands = registry["extensions"]["git"]["registered_commands"]
        assert "claude" in registered_commands
        assert "opencode" not in registered_commands

    def test_switch_migrates_copilot_skills_extension_commands(self, tmp_path):
        """Copilot --skills should receive extension skills, not .agent.md files."""
        project = _init_project(tmp_path, "opencode")

        result = _run_in_project(project, ["extension", "add", "git"])
        assert result.exit_code == 0, f"extension add failed: {result.output}"

        result = _run_in_project(project, [
            "integration", "switch", "copilot",
            "--script", "sh",
            "--integration-options", "--skills",
        ])
        assert result.exit_code == 0, result.output

        copilot_git_feature = project / ".github" / "skills" / "speckit-git-feature" / "SKILL.md"
        copilot_agent_file = project / ".github" / "agents" / "speckit.git.feature.agent.md"
        assert copilot_git_feature.exists(), "Git extension skill should exist for Copilot skills mode"
        assert not copilot_agent_file.exists(), "Copilot skills mode should not create extension .agent.md files"

        # Verify Copilot-specific frontmatter: mode field should map from
        # skill name (speckit-git-feature) back to dot notation (speckit.git-feature)
        skill_content = copilot_git_feature.read_text(encoding="utf-8")
        assert "mode: speckit.git-feature" in skill_content, (
            "Copilot skill frontmatter should contain mode mapped from skill name"
        )

        registry = json.loads(
            (project / ".specify" / "extensions" / ".registry").read_text(encoding="utf-8")
        )
        git_meta = registry["extensions"]["git"]
        assert "speckit-git-feature" in git_meta["registered_skills"]
        assert "copilot" not in git_meta["registered_commands"]

        result = _run_in_project(project, [
            "integration", "switch", "opencode",
            "--script", "sh",
        ])
        assert result.exit_code == 0, result.output

        opencode_git_feature = project / ".opencode" / "commands" / "speckit.git.feature.md"
        assert opencode_git_feature.exists(), "Git extension command should exist for opencode"
        assert not copilot_git_feature.exists(), "Old Copilot extension skill should be removed"

        registry = json.loads(
            (project / ".specify" / "extensions" / ".registry").read_text(encoding="utf-8")
        )
        git_meta = registry["extensions"]["git"]
        assert git_meta["registered_skills"] == []
        assert "opencode" in git_meta["registered_commands"]
        assert "copilot" not in git_meta["registered_commands"]

    def test_switch_does_not_register_disabled_extensions(self, tmp_path):
        """Disabled extensions should stay disabled and should not migrate commands."""
        project = _init_project(tmp_path, "opencode")

        result = _run_in_project(project, ["extension", "add", "git"])
        assert result.exit_code == 0, f"extension add failed: {result.output}"
        result = _run_in_project(project, ["extension", "disable", "git"])
        assert result.exit_code == 0, result.output

        opencode_git_feature = project / ".opencode" / "commands" / "speckit.git.feature.md"
        assert opencode_git_feature.exists(), "Disabled extension command remains until integration switch"

        result = _run_in_project(project, [
            "integration", "switch", "claude",
            "--script", "sh",
        ])
        assert result.exit_code == 0, result.output

        claude_git_feature = project / ".claude" / "skills" / "speckit-git-feature" / "SKILL.md"
        assert not claude_git_feature.exists(), "Disabled extension should not be registered for new agent"
        assert not opencode_git_feature.exists(), "Old disabled extension command should be removed on switch"

        registry = json.loads(
            (project / ".specify" / "extensions" / ".registry").read_text(encoding="utf-8")
        )
        git_meta = registry["extensions"]["git"]
        assert git_meta["enabled"] is False
        assert "claude" not in git_meta["registered_commands"]
        assert "opencode" not in git_meta["registered_commands"]

    def test_switch_preserves_shared_infra(self, tmp_path):
        """Switching preserves shared scripts, templates, and memory."""
        project = _init_project(tmp_path, "claude")
        shared_script = project / ".specify" / "scripts" / "bash" / "common.sh"
        assert shared_script.exists()
        shared_content = shared_script.read_text(encoding="utf-8")

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "switch", "copilot",
                "--script", "sh",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0

        # Shared infra untouched
        assert shared_script.exists()
        assert shared_script.read_text(encoding="utf-8") == shared_content

    def test_switch_refreshes_stale_managed_shared_infra(self, tmp_path):
        """Regression for #2293: stale managed shared scripts get refreshed on switch."""
        import hashlib

        project = _init_project(tmp_path, "claude")
        shared_script = project / ".specify" / "scripts" / "bash" / "common.sh"
        bundled_bytes = shared_script.read_bytes()

        # Simulate a stale vendored script: write truncated content as bytes
        # (write_text would translate \n→\r\n on Windows and break the hash)
        # and update the speckit manifest hash so the stale copy is treated
        # as "managed" (installed by spec-kit, not a user customization).
        stale_bytes = b"#!/usr/bin/env bash\n# stale vendored copy\n"
        shared_script.write_bytes(stale_bytes)

        manifest_path = project / ".specify" / "integrations" / "speckit.manifest.json"
        manifest_data = json.loads(manifest_path.read_text(encoding="utf-8"))
        manifest_data["files"][".specify/scripts/bash/common.sh"] = (
            hashlib.sha256(stale_bytes).hexdigest()
        )
        manifest_path.write_text(json.dumps(manifest_data), encoding="utf-8")

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "switch", "copilot",
                "--script", "sh",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0

        # Stale managed file should be replaced by the bundled version
        assert shared_script.read_bytes() == bundled_bytes

    def test_switch_preserves_user_customized_shared_infra(self, tmp_path):
        """User customizations (hash divergence from manifest) survive switch without --refresh-shared-infra."""
        project = _init_project(tmp_path, "claude")
        shared_script = project / ".specify" / "scripts" / "bash" / "common.sh"

        # User customization: append bytes but do NOT update manifest hash,
        # so on-disk hash diverges from the recorded one.
        original = shared_script.read_bytes()
        custom_bytes = original + b"\n# user customization\n"
        shared_script.write_bytes(custom_bytes)

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "switch", "copilot",
                "--script", "sh",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0
        assert shared_script.read_bytes() == custom_bytes
        assert "Preserved" in result.output

    def test_switch_refresh_shared_infra_overwrites_customizations(self, tmp_path):
        """--refresh-shared-infra explicitly overwrites user customizations on switch."""
        project = _init_project(tmp_path, "claude")
        shared_script = project / ".specify" / "scripts" / "bash" / "common.sh"
        bundled_bytes = shared_script.read_bytes()

        # User customization (hash diverges from manifest)
        custom_bytes = bundled_bytes + b"\n# user customization\n"
        shared_script.write_bytes(custom_bytes)

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "switch", "copilot",
                "--script", "sh",
                "--refresh-shared-infra",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0
        # Customization is overwritten with the bundled version
        assert shared_script.read_bytes() == bundled_bytes

    def test_switch_skips_symlinked_parent_directory(self, tmp_path):
        """Regression: if .specify/scripts/bash is a symlink, switch must not write through it.

        Copilot follow-up on #2375: leaf-only symlink check let writes escape
        when an *ancestor* directory was symlinked outside the project root.
        """
        import sys
        if sys.platform.startswith("win"):
            import pytest as _pytest
            _pytest.skip("Symlink creation typically requires admin on Windows")

        project = _init_project(tmp_path, "claude")
        bash_dir = project / ".specify" / "scripts" / "bash"
        outside = tmp_path / "outside"
        outside.mkdir()
        for child in bash_dir.iterdir():
            child.rename(outside / child.name)
        bash_dir.rmdir()
        bash_dir.symlink_to(outside, target_is_directory=True)
        sentinel = (outside / "common.sh").read_bytes()

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "switch", "copilot",
                "--script", "sh",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0
        # Symlinked tree reported, not written through.
        assert "symlink" in result.output.lower()
        # Outside dir contents unchanged.
        assert (outside / "common.sh").read_bytes() == sentinel

    def test_switch_force_alone_does_not_overwrite_shared_customizations(self, tmp_path):
        """--force (uninstall semantics) must NOT overwrite shared-infra customizations.

        Regression: ensures the decoupling of --force and --refresh-shared-infra.
        """
        project = _init_project(tmp_path, "claude")
        shared_script = project / ".specify" / "scripts" / "bash" / "common.sh"
        bundled_bytes = shared_script.read_bytes()

        custom_bytes = bundled_bytes + b"\n# user customization\n"
        shared_script.write_bytes(custom_bytes)

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "switch", "copilot",
                "--script", "sh",
                "--force",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0
        # --force alone preserves the customization
        assert shared_script.read_bytes() == custom_bytes

    def test_switch_from_nothing(self, tmp_path):
        """Switch when no integration is installed should just install the target."""
        project = tmp_path / "bare"
        project.mkdir()
        (project / ".specify").mkdir()
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "switch", "claude",
                "--script", "sh",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0
        assert "Switched to" in result.output

        data = json.loads((project / ".specify" / "integration.json").read_text(encoding="utf-8"))
        assert data["integration"] == "claude"

    def test_failed_switch_keeps_fallback_metadata_consistent(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            install = runner.invoke(app, [
                "integration", "install", "codex",
                "--script", "sh",
            ], catch_exceptions=False)
            assert install.exit_code == 0, install.output

            result = runner.invoke(app, [
                "integration", "switch", "generic",
                "--script", "sh",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0

        data = json.loads((project / ".specify" / "integration.json").read_text(encoding="utf-8"))
        assert data["integration"] == "codex"
        assert data["installed_integrations"] == ["codex"]

        opts = json.loads((project / ".specify" / "init-options.json").read_text(encoding="utf-8"))
        assert opts["integration"] == "codex"
        assert opts["ai"] == "codex"

        template = project / ".specify" / "templates" / "plan-template.md"
        assert "/speckit-plan" in template.read_text(encoding="utf-8")


class TestIntegrationUpgrade:
    def test_upgrade_invalid_manifest_reports_cli_error(self, tmp_path):
        project = _init_project(tmp_path, "claude")
        _write_invalid_manifest(project, "claude")

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "upgrade", "claude"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "manifest" in result.output
        assert "unreadable" in result.output

    def test_upgrade_refreshes_init_options_speckit_version(self, tmp_path, monkeypatch):
        project = _init_project(tmp_path, "claude")
        init_options = project / ".specify" / "init-options.json"
        opts = json.loads(init_options.read_text(encoding="utf-8"))
        opts["speckit_version"] = "0.6.1"
        init_options.write_text(json.dumps(opts), encoding="utf-8")

        import specify_cli

        monkeypatch.setattr(specify_cli, "get_speckit_version", lambda: "0.8.11")

        result = _run_in_project(project, [
            "integration", "upgrade", "claude",
            "--force",
        ])

        assert result.exit_code == 0, result.output
        updated = json.loads(init_options.read_text(encoding="utf-8"))
        assert updated["speckit_version"] == "0.8.11"

    def test_upgrade_non_default_refreshes_init_options_version_only(self, tmp_path, monkeypatch):
        project = _init_project(tmp_path, "gemini")
        install = _run_in_project(project, [
            "integration", "install", "claude",
            "--script", "sh",
        ])
        assert install.exit_code == 0, install.output

        init_options = project / ".specify" / "init-options.json"
        opts = json.loads(init_options.read_text(encoding="utf-8"))
        opts["speckit_version"] = "0.6.1"
        init_options.write_text(json.dumps(opts), encoding="utf-8")

        import specify_cli

        monkeypatch.setattr(specify_cli, "get_speckit_version", lambda: "0.8.11")

        result = _run_in_project(project, [
            "integration", "upgrade", "claude",
            "--script", "sh",
            "--force",
        ])

        assert result.exit_code == 0, result.output
        updated = json.loads(init_options.read_text(encoding="utf-8"))
        assert updated["speckit_version"] == "0.8.11"
        assert updated["integration"] == "gemini"
        assert updated["ai"] == "gemini"
        assert updated["context_file"] == "GEMINI.md"

    def test_upgrade_does_not_persist_state_when_template_refresh_fails(self, tmp_path, monkeypatch):
        project = _init_project(tmp_path, "claude")
        int_json = project / ".specify" / "integration.json"
        init_options = project / ".specify" / "init-options.json"
        manifest_path = project / ".specify" / "integrations" / "claude.manifest.json"

        before_state = json.loads(int_json.read_text(encoding="utf-8"))
        before_options = json.loads(init_options.read_text(encoding="utf-8"))
        before_manifest = manifest_path.read_text(encoding="utf-8")

        import specify_cli

        def fail_refresh(*args, **kwargs):
            raise ValueError("refuse refresh")

        monkeypatch.setattr(specify_cli, "_refresh_shared_templates", fail_refresh)

        result = _run_in_project(project, [
            "integration", "upgrade", "claude",
            "--force",
        ])

        assert result.exit_code != 0
        assert "Failed to refresh shared templates" in result.output
        assert json.loads(int_json.read_text(encoding="utf-8")) == before_state
        assert json.loads(init_options.read_text(encoding="utf-8")) == before_options
        assert manifest_path.read_text(encoding="utf-8") == before_manifest

    def test_upgrade_non_default_keeps_default_template_invocations(self, tmp_path):
        project = _init_project(tmp_path, "gemini")
        template = project / ".specify" / "templates" / "plan-template.md"
        assert "/speckit.plan" in template.read_text(encoding="utf-8")

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            install = runner.invoke(app, [
                "integration", "install", "claude",
                "--script", "sh",
            ], catch_exceptions=False)
            assert install.exit_code == 0, install.output

            result = runner.invoke(app, [
                "integration", "upgrade", "claude",
                "--script", "sh",
                "--force",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0, result.output

        data = json.loads((project / ".specify" / "integration.json").read_text(encoding="utf-8"))
        assert data["integration"] == "gemini"
        assert "/speckit.plan" in template.read_text(encoding="utf-8")

    def test_upgrade_migrates_opencode_legacy_dir(self, tmp_path):
        """Upgrade moves OpenCode commands from .opencode/command/ to .opencode/commands/."""
        project = _init_project(tmp_path, "opencode")

        # Simulate a legacy project: rename commands/ back to command/
        canonical = project / ".opencode" / "commands"
        legacy = project / ".opencode" / "command"
        assert canonical.is_dir(), "init should have created .opencode/commands/"
        canonical.rename(legacy)
        assert legacy.is_dir()
        assert not canonical.exists()

        # Patch the manifest to reflect old paths (command/ not commands/)
        manifest_path = project / ".specify" / "integrations" / "opencode.manifest.json"
        manifest_data = json.loads(manifest_path.read_text(encoding="utf-8"))
        patched_files = {}
        for path, info in manifest_data.get("files", {}).items():
            patched_files[path.replace(".opencode/commands/", ".opencode/command/")] = info
        manifest_data["files"] = patched_files
        manifest_path.write_text(json.dumps(manifest_data), encoding="utf-8")

        old_commands = sorted(legacy.glob("speckit.*.md"))
        assert len(old_commands) > 0, "Legacy dir should have speckit command files"

        result = _run_in_project(project, [
            "integration", "upgrade", "opencode",
            "--script", "sh",
            "--force",
        ])
        assert result.exit_code == 0, f"upgrade failed: {result.output}"

        # New commands in canonical dir
        assert canonical.is_dir(), ".opencode/commands/ should exist after upgrade"
        new_commands = sorted(canonical.glob("speckit.*.md"))
        assert len(new_commands) > 0, "Commands should exist in .opencode/commands/"

        # Stale files removed from legacy dir
        remaining = list(legacy.glob("speckit.*.md"))
        assert len(remaining) == 0, (
            f"Legacy .opencode/command/ should have no speckit files after upgrade, "
            f"found: {[f.name for f in remaining]}"
        )


# ── Full lifecycle ───────────────────────────────────────────────────


class TestIntegrationLifecycle:
    def test_install_modify_uninstall_preserves_modified(self, tmp_path):
        """Full lifecycle: install → modify file → uninstall → verify modified file kept."""
        project = tmp_path / "lifecycle"
        project.mkdir()
        (project / ".specify").mkdir()

        old_cwd = os.getcwd()
        try:
            os.chdir(project)

            # Install
            result = runner.invoke(app, [
                "integration", "install", "claude",
                "--script", "sh",
            ], catch_exceptions=False)
            assert result.exit_code == 0
            assert "installed successfully" in result.output

            # Claude uses skills directory
            plan_file = project / ".claude" / "skills" / "speckit-plan" / "SKILL.md"
            assert plan_file.exists()

            # Modify one file
            plan_file.write_text("# user customization\n", encoding="utf-8")

            # Uninstall
            result = runner.invoke(app, ["integration", "uninstall"], catch_exceptions=False)
            assert result.exit_code == 0
            assert "preserved" in result.output

            # Modified file kept
            assert plan_file.exists()
            assert plan_file.read_text(encoding="utf-8") == "# user customization\n"
        finally:
            os.chdir(old_cwd)


# ── Edge-case fixes ─────────────────────────────────────────────────


class TestScriptTypeValidation:
    def test_invalid_script_type_rejected(self, tmp_path):
        """--script with an invalid value should fail with a clear error."""
        project = tmp_path / "proj"
        project.mkdir()
        (project / ".specify").mkdir()
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "install", "claude",
                "--script", "bash",
            ])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code != 0
        assert "Invalid script type" in result.output

    def test_valid_script_types_accepted(self, tmp_path):
        """Both 'sh' and 'ps' should be accepted."""
        project = tmp_path / "proj"
        project.mkdir()
        (project / ".specify").mkdir()
        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, [
                "integration", "install", "claude",
                "--script", "sh",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0


class TestParseIntegrationOptionsEqualsForm:
    def test_equals_form_parsed(self):
        """--commands-dir=./x should be parsed the same as --commands-dir ./x."""
        from specify_cli import _parse_integration_options
        from specify_cli.integrations import get_integration

        integration = get_integration("generic")
        assert integration is not None

        result_space = _parse_integration_options(integration, "--commands-dir ./mydir")
        result_equals = _parse_integration_options(integration, "--commands-dir=./mydir")
        assert result_space is not None
        assert result_equals is not None
        assert result_space["commands_dir"] == "./mydir"
        assert result_equals["commands_dir"] == "./mydir"


class TestUninstallNoManifestClearsInitOptions:
    def test_init_options_cleared_on_no_manifest_uninstall(self, tmp_path):
        """When no manifest exists, uninstall should still clear init-options.json."""
        project = tmp_path / "proj"
        project.mkdir()
        (project / ".specify").mkdir()

        # Write integration.json and init-options.json without a manifest
        int_json = project / ".specify" / "integration.json"
        int_json.write_text(json.dumps({"integration": "claude"}), encoding="utf-8")

        opts_json = project / ".specify" / "init-options.json"
        opts_json.write_text(json.dumps({
            "integration": "claude",
            "ai": "claude",
            "ai_skills": True,
            "script": "sh",
        }), encoding="utf-8")

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            result = runner.invoke(app, ["integration", "uninstall", "claude"])
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0

        # init-options.json should have integration keys cleared
        opts = json.loads(opts_json.read_text(encoding="utf-8"))
        assert "integration" not in opts
        assert "ai" not in opts
        assert "ai_skills" not in opts
        # Non-integration keys preserved
        assert opts.get("script") == "sh"


class TestSwitchClearsMetadataAfterTeardown:
    def test_metadata_cleared_between_phases(self, tmp_path):
        """After a successful switch, metadata should reference the new integration."""
        project = _init_project(tmp_path, "claude")

        # Verify initial state
        int_json = project / ".specify" / "integration.json"
        assert json.loads(int_json.read_text(encoding="utf-8"))["integration"] == "claude"

        old_cwd = os.getcwd()
        try:
            os.chdir(project)
            # Switch to copilot — should succeed and update metadata
            result = runner.invoke(app, [
                "integration", "switch", "copilot",
                "--script", "sh",
            ], catch_exceptions=False)
        finally:
            os.chdir(old_cwd)
        assert result.exit_code == 0

        # integration.json should reference copilot, not claude
        data = json.loads(int_json.read_text(encoding="utf-8"))
        assert data["integration"] == "copilot"

        # init-options.json should reference copilot
        opts_json = project / ".specify" / "init-options.json"
        opts = json.loads(opts_json.read_text(encoding="utf-8"))
        assert opts.get("ai") == "copilot"