Skip to content

Commit d2c658b

Browse files
mcbrider5002mcbrider5002
committed
Added guide to matching. Updated guide to ViMMS to include another diagram, changed style of headers slightly, replaced links to papers with DOIs.
1 parent a2a0b59 commit d2c658b

10 files changed

Lines changed: 125666 additions & 31533 deletions

‎.gitignore‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -137,6 +137,6 @@ examples/01. vimms (Wandy et al 2019)/supporting_files/
137137
demo/01. Data/hmdb_metabolites.zip
138138
demo/01. Data/results/
139139
demo/02. Methods/results/
140-
demo/guide_to_vimms/tests/results/*
140+
demo/guide_to_vimms/results/*
141141
test_animation.mzML
142142
vimms/scripts/debug_chems

‎demo/guide_to_vimms/README.md‎

Lines changed: 7 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,7 @@
1+
Some higher level guides to ViMMS.
2+
3+
guide_to_vimms:
4+
Explains how to run a basic experiment comparing two fragmentation strategies in ViMMS.
5+
6+
guide_to_matching:
7+
Explains the principles of controllers based on maximum bipartite matching.

demo/guide_to_vimms/tests/fixtures/demoN0.mzML renamed to demo/guide_to_vimms/fixtures/demoN0.mzML

File renamed without changes.

demo/guide_to_vimms/tests/fixtures/fullscan_beer1_0.mzML renamed to demo/guide_to_vimms/fixtures/fullscan_beer1_0.mzML

Lines changed: 27521 additions & 31158 deletions
Large diffs are not rendered by default.

‎demo/guide_to_vimms/fixtures/fullscan_beer2_0.mzML‎

Lines changed: 96727 additions & 0 deletions
Large diffs are not rendered by default.

‎demo/guide_to_vimms/guide_to_matching.ipynb‎

Lines changed: 1003 additions & 0 deletions
Large diffs are not rendered by default.

‎demo/guide_to_vimms/guide_to_vimms.ipynb‎

Lines changed: 400 additions & 374 deletions
Large diffs are not rendered by default.

‎demo/guide_to_vimms/images/architecture_diagram.jpg‎

454 KB
Loading

‎demo/guide_to_vimms/images/bipartite_matching.svg‎

Lines changed: 4 additions & 0 deletions
Loading

‎demo/guide_to_vimms/images/matching_workflow.svg‎

Lines changed: 3 additions & 0 deletions
Loading

0 commit comments

Comments
 (0)