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Updated online manual
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‎docs/copying.html‎

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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
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<head>
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<meta http-equiv="content-type" content="text/html; charset=utf-8" />
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<meta name="date" content="2026-07-06"/>
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<meta name="date" content="2026-07-07"/>
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<meta name="generator" content="generate_html 0.3.3" />
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<meta name="author" content="Andrew Penn" />
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<meta name="description" content="A package for statistical analysis using resampling methods." />

‎docs/description.json‎

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11
{
22
"generator": "generate_html",
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"generator_version": "0.3.3",
4-
"date_generated": "2026-07-06",
4+
"date_generated": "2026-07-07",
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"package":
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{
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"name": "statistics-resampling",

‎docs/function/boot.html‎

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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
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<head>
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<meta http-equiv="content-type" content="text/html; charset=utf-8" />
6-
<meta name="date" content="2026-07-06"/>
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<meta name="date" content="2026-07-07"/>
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<meta name="generator" content="generate_html 0.3.3" />
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<meta name="author" content="Andrew Penn" />
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<meta name="description" content="A package for statistical analysis using resampling methods." />
@@ -118,15 +118,15 @@ <h3><a name="1">Demonstration 1</a></h3>
118118

119119
Columns 1 through 12:
120120

121-
1 1 1 3 3 3 3 1 3 2 3 1
122-
2 1 1 2 2 3 2 3 1 3 2 1
123-
2 2 3 3 1 1 3 1 3 3 3 1
121+
3 3 2 2 1 1 3 1 3 1 1 1
122+
3 3 1 3 1 2 1 2 2 3 1 2
123+
2 1 2 3 3 2 1 2 2 1 2 2
124124

125125
Columns 13 through 20:
126126

127-
2 2 2 2 1 2 1 3
128-
1 2 1 2 1 2 3 2
129-
3 2 3 1 2 1 3 2</pre>
127+
2 3 3 3 3 2 2 2
128+
2 3 1 3 1 1 2 1
129+
3 2 1 3 3 3 1 1</pre>
130130
</div>
131131

132132
<h3><a name="2">Demonstration 2</a></h3>
@@ -141,15 +141,15 @@ <h3><a name="2">Demonstration 2</a></h3>
141141

142142
Columns 1 through 12:
143143

144-
2 1 2 3 3 1 2 3 2 2 1 2
145-
3 1 1 2 1 2 2 1 2 2 1 2
146-
3 3 2 2 1 2 3 3 1 2 3 2
144+
3 1 2 2 1 1 3 1 2 2 1 1
145+
3 1 2 3 1 1 2 1 2 2 3 1
146+
3 3 2 3 3 2 2 1 2 3 3 2
147147

148148
Columns 13 through 20:
149149

150-
3 3 1 3 3 2 2 1
151-
3 1 1 3 1 1 3 1
152-
3 3 1 2 1 1 3 3</pre>
150+
3 3 1 3 1 2 1 2
151+
2 3 1 2 3 1 2 2
152+
3 1 1 3 3 2 1 3</pre>
153153
</div>
154154

155155
<h3><a name="3">Demonstration 3</a></h3>
@@ -194,15 +194,15 @@ <h3><a name="3">Demonstration 3</a></h3>
194194

195195
Columns 1 through 12:
196196

197-
2 2 1 3 3 1 1 3 3 1 2 3
198-
3 1 2 3 1 2 1 1 2 3 3 3
199-
2 2 2 2 1 2 2 1 3 1 2 1
197+
2 1 3 1 1 1 1 2 3 3 2 3
198+
3 1 2 2 1 3 3 1 2 1 1 2
199+
2 2 1 2 2 1 1 2 1 1 3 2
200200

201201
Columns 13 through 20:
202202

203-
1 2 2 3 1 1 3 1
204-
3 2 3 3 1 2 3 2
205-
3 1 2 3 1 3 2 1</pre>
203+
1 2 3 1 3 2 2 3
204+
2 1 3 3 3 1 2 3
205+
3 2 3 1 2 3 3 3</pre>
206206
</div>
207207

208208
<h3><a name="4">Demonstration 4</a></h3>
@@ -249,21 +249,21 @@ <h3><a name="5">Demonstration 5</a></h3>
249249

250250
ans =
251251

252+
4
253+
4
254+
3
252255
5
253-
2
254-
1
255-
6
256-
1
257256
3
257+
4
258258

259259
ans =
260260

261-
3
262-
1
263-
3
261+
6
264262
6
265263
1
266-
3</pre>
264+
3
265+
4
266+
5</pre>
267267
</div>
268268

269269
<p>Package: <a href="../index.html">statistics-resampling</a></p>

‎docs/function/boot1way.html‎

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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
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<head>
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<meta http-equiv="content-type" content="text/html; charset=utf-8" />
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<meta name="date" content="2026-07-06"/>
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<meta name="date" content="2026-07-07"/>
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<meta name="generator" content="generate_html 0.3.3" />
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<meta name="author" content="Andrew Penn" />
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<meta name="description" content="A package for statistical analysis using resampling methods." />
@@ -201,7 +201,7 @@ <h3><a name="1">Demonstration 1</a></h3>
201201
-----------------------------------------------------------------------------
202202
| Comparison | Test # | Ref # | Difference | t | p |
203203
|------------|------------|------------|------------|------------|----------|
204-
| 1 | 1 | 2 | +10.80 | +1.20 | .265 |
204+
| 1 | 1 | 2 | +10.80 | +1.20 | .269 |
205205

206206
-----------------------------------------------------------------------------
207207
| GROUP # | GROUP label | N |
@@ -256,7 +256,7 @@ <h3><a name="2">Demonstration 2</a></h3>
256256
-----------------------------------------------------------------------------
257257
| Comparison | Test # | Ref # | Difference | t | p |
258258
|------------|------------|------------|------------|------------|----------|
259-
| 1 | 1 | 2 | +8.721 | +0.77 | .438 |
259+
| 1 | 1 | 2 | +8.721 | +0.77 | .435 |
260260

261261
-----------------------------------------------------------------------------
262262
| GROUP # | GROUP label | N |
@@ -306,12 +306,12 @@ <h3><a name="3">Demonstration 3</a></h3>
306306
-----------------------------------------------------------------------------
307307
| Comparison | Test # | Ref # | Difference | t | p |
308308
|------------|------------|------------|------------|------------|----------|
309-
| 1 | 2 | 1 | -9.480 | -0.93 | .855 |
310-
| 2 | 3 | 1 | -24.90 | -2.43 | .098 |
311-
| 3 | 4 | 1 | -33.24 | -3.24 | .019 |*
312-
| 4 | 5 | 1 | -13.50 | -1.32 | .596 |
313-
| 5 | 6 | 1 | -20.70 | -2.02 | .204 |
314-
| 6 | 7 | 1 | -31.14 | -3.04 | .030 |*
309+
| 1 | 2 | 1 | -9.480 | -0.93 | .861 |
310+
| 2 | 3 | 1 | -24.90 | -2.43 | .099 |
311+
| 3 | 4 | 1 | -33.24 | -3.24 | .017 |*
312+
| 4 | 5 | 1 | -13.50 | -1.32 | .602 |
313+
| 5 | 6 | 1 | -20.70 | -2.02 | .213 |
314+
| 6 | 7 | 1 | -31.14 | -3.04 | .026 |*
315315

316316
-----------------------------------------------------------------------------
317317
| GROUP # | GROUP label | N |
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366366
-----------------------------------------------------------------------------
367367
| Comparison | Test # | Ref # | Difference | t | p |
368368
|------------|------------|------------|------------|------------|----------|
369-
| 1 | 2 | 1 | -6.664 | -0.82 | .914 |
370-
| 2 | 3 | 1 | -30.18 | -3.73 | .016 |*
369+
| 1 | 2 | 1 | -6.664 | -0.82 | .905 |
370+
| 2 | 3 | 1 | -30.18 | -3.73 | .017 |*
371371
| 3 | 4 | 1 | -35.63 | -4.40 | .006 |**
372-
| 4 | 5 | 1 | -16.21 | -2.00 | .282 |
373-
| 5 | 6 | 1 | -19.95 | -2.46 | .137 |
372+
| 4 | 5 | 1 | -16.21 | -2.00 | .272 |
373+
| 5 | 6 | 1 | -19.95 | -2.46 | .130 |
374374
| 6 | 7 | 1 | -34.86 | -4.30 | .007 |**
375375

376376
-----------------------------------------------------------------------------
@@ -430,8 +430,8 @@ <h3><a name="5">Demonstration 5</a></h3>
430430
| Comparison | Test # | Ref # | Difference | t | p |
431431
|------------|------------|------------|------------|------------|----------|
432432
| 1 | 2 | 1 | +38.33 | +6.17 | <.001 |***
433-
| 2 | 3 | 1 | +3.500 | +0.59 | .833 |
434-
| 3 | 3 | 2 | -34.83 | -5.60 | 1.000 |
433+
| 2 | 3 | 1 | +3.500 | +0.59 | .821 |
434+
| 3 | 3 | 2 | -34.83 | -5.60 | <.001 |***
435435

436436
-----------------------------------------------------------------------------
437437
| GROUP # | GROUP label | N |
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483483
-----------------------------------------------------------------------------
484484
| Comparison | Test # | Ref # | Difference | t | p |
485485
|------------|------------|------------|------------|------------|----------|
486-
| 1 | 2 | 1 | +1.207 | +0.25 | .957 |
487-
| 2 | 3 | 1 | -5.356 | -1.16 | .521 |
488-
| 3 | 3 | 2 | -6.563 | -1.36 | .448 |
486+
| 1 | 2 | 1 | +1.207 | +0.25 | .958 |
487+
| 2 | 3 | 1 | -5.356 | -1.17 | .541 |
488+
| 3 | 3 | 2 | -6.563 | -1.37 | .453 |
489489

490490
-----------------------------------------------------------------------------
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| GROUP # | GROUP label | N |
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529529
-----------------------------------------------------------------------------
530530
| Comparison | Test # | Ref # | Difference | t | p |
531531
|------------|------------|------------|------------|------------|----------|
532-
| 1 | 2 | 1 | +0.03748 | +0.08 | .917 |
532+
| 1 | 2 | 1 | +0.03748 | +0.08 | .938 |
533533

534534
-----------------------------------------------------------------------------
535535
| GROUP # | GROUP label | N |
@@ -574,7 +574,7 @@ <h3><a name="8">Demonstration 8</a></h3>
574574
-----------------------------------------------------------------------------
575575
| Comparison | Test # | Ref # | Difference | t | p |
576576
|------------|------------|------------|------------|------------|----------|
577-
| 1 | 2 | 1 | +0.3870 | +0.93 | .192 |
577+
| 1 | 2 | 1 | +0.3870 | +0.83 | .229 |
578578

579579
-----------------------------------------------------------------------------
580580
| GROUP # | GROUP label | N |

‎docs/function/bootbayes.html‎

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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
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<head>
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<meta http-equiv="content-type" content="text/html; charset=utf-8" />
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<meta name="date" content="2026-07-06"/>
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<meta name="date" content="2026-07-07"/>
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<meta name="generator" content="generate_html 0.3.3" />
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<meta name="author" content="Andrew Penn" />
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<meta name="description" content="A package for statistical analysis using resampling methods." />
@@ -318,7 +318,7 @@ <h3><a name="3">Demonstration 3</a></h3>
318318
Running bootbayes with 500 bootstrap resamples...
319319

320320
--- Performance Results ---
321-
Runtime: 78.82 seconds
321+
Runtime: 69.04 seconds
322322
Total parameters estimated: 30000
323323
Correlation of estimates for Gene 1744: 0.9999
324324
Number of outcome cells in stats.stdev: 2000

‎docs/function/bootcdf.html‎

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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
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<head>
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<meta http-equiv="content-type" content="text/html; charset=utf-8" />
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<meta name="date" content="2026-07-06"/>
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<meta name="date" content="2026-07-07"/>
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<meta name="generator" content="generate_html 0.3.3" />
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<meta name="author" content="Andrew Penn" />
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<meta name="description" content="A package for statistical analysis using resampling methods." />

‎docs/function/bootci.html‎

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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
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<head>
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<meta http-equiv="content-type" content="text/html; charset=utf-8" />
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<meta name="date" content="2026-07-06"/>
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<meta name="date" content="2026-07-07"/>
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<meta name="generator" content="generate_html 0.3.3" />
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<meta name="author" content="Andrew Penn" />
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<meta name="description" content="A package for statistical analysis using resampling methods." />
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188188
<p>Produces the following output</p>
189189
<pre class="example">ci =
190190

191-
23.709
192-
34.861</pre>
191+
23.809
192+
34.433</pre>
193193
</div>
194194

195195
<h3><a name="2">Demonstration 2</a></h3>
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208208
<p>Produces the following output</p>
209209
<pre class="example">ci =
210210

211-
24.007
212-
34.331</pre>
211+
23.734
212+
34.517</pre>
213213
</div>
214214

215215
<h3><a name="3">Demonstration 3</a></h3>
@@ -229,8 +229,8 @@ <h3><a name="3">Demonstration 3</a></h3>
229229
<p>Produces the following output</p>
230230
<pre class="example">ci =
231231

232-
24.753
233-
36.432</pre>
232+
24.42
233+
36.695</pre>
234234
</div>
235235

236236
<h3><a name="4">Demonstration 4</a></h3>
@@ -249,8 +249,8 @@ <h3><a name="4">Demonstration 4</a></h3>
249249
<p>Produces the following output</p>
250250
<pre class="example">ci =
251251

252-
97.38
253-
235.05</pre>
252+
95.794
253+
235.47</pre>
254254
</div>
255255

256256
<h3><a name="5">Demonstration 5</a></h3>
@@ -269,8 +269,8 @@ <h3><a name="5">Demonstration 5</a></h3>
269269
<p>Produces the following output</p>
270270
<pre class="example">ci =
271271

272-
114.71
273-
261.78</pre>
272+
118.06
273+
259.32</pre>
274274
</div>
275275

276276
<h3><a name="6">Demonstration 6</a></h3>
@@ -290,8 +290,8 @@ <h3><a name="6">Demonstration 6</a></h3>
290290
<p>Produces the following output</p>
291291
<pre class="example">ci =
292292

293-
110.05
294-
307.87</pre>
293+
112.89
294+
287.67</pre>
295295
</div>
296296

297297
<h3><a name="7">Demonstration 7</a></h3>
@@ -311,8 +311,8 @@ <h3><a name="7">Demonstration 7</a></h3>
311311
<p>Produces the following output</p>
312312
<pre class="example">ci =
313313

314-
114.84
315-
279.65</pre>
314+
111.22
315+
281.98</pre>
316316
</div>
317317

318318
<h3><a name="8">Demonstration 8</a></h3>
@@ -333,8 +333,8 @@ <h3><a name="8">Demonstration 8</a></h3>
333333
<p>Produces the following output</p>
334334
<pre class="example">ci =
335335

336-
0.50781
337-
0.86533</pre>
336+
0.50011
337+
0.85987</pre>
338338
</div>
339339

340340
<h3><a name="9">Demonstration 9</a></h3>
@@ -441,13 +441,13 @@ <h3><a name="9">Demonstration 9</a></h3>
441441
<p>Produces the following output</p>
442442
<pre class="example">ans =
443443

444-
-16.69 -20.559 -12.5
445-
-11.721 -15.189 -7.9909
446-
-8.0606 -11.346 -4.525
447-
0.10476 -0.080034 0.27633
448-
0.010336 -0.002645 0.023531
449-
0.06452 0.032159 0.096968
450-
0.0016638 0.00019133 0.0032632</pre>
444+
-16.69 -20.42 -12.289
445+
-11.721 -15.104 -7.9081
446+
-8.0606 -11.298 -4.4177
447+
0.10476 -0.085946 0.27555
448+
0.010336 -0.0024827 0.023285
449+
0.06452 0.03197 0.099405
450+
0.0016638 0.00013586 0.003006</pre>
451451
</div>
452452

453453
<h3><a name="10">Demonstration 10</a></h3>
@@ -468,8 +468,8 @@ <h3><a name="10">Demonstration 10</a></h3>
468468
<p>Produces the following output</p>
469469
<pre class="example">ci =
470470

471-
-0.98891 -0.43948
472-
-0.15218 0.76848</pre>
471+
-0.99669 -0.42315
472+
-0.1524 0.79023</pre>
473473
</div>
474474

475475
<h3><a name="11">Demonstration 11</a></h3>

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