Update Libraries (networkx, beartype, pot, etc..) (#1080)

* update bearype, hyppo, networkx, pot

* update testfixtures library

* update nbsphinx

* Update ipython, ipykernel

* add setuptools dependency

* dynamically generate version file

* replace setuptools with other methods

* remove unused import

* leave a stub version file in the project

Author: darthtrevino

graspologic/layouts/colors.py

@@ -1,7 +1,6 @@
 # Copyright (c) Microsoft Corporation.
 # Licensed under the MIT license.
 
-import atexit
 import json
 import math
 import os
@@ -10,7 +9,6 @@
 from typing import Any, Optional
 
 import numpy as np
-import pkg_resources
 from sklearn.preprocessing import minmax_scale
 
 from graspologic.types import Dict, Tuple
@@ -22,9 +20,8 @@ def _load_thematic_json(path: Optional[str]) -> Tuple[Dict[Any, Any], Dict[Any,
     if path is not None and Path(path).is_file():
         colors_path = path
     else:
-        atexit.register(pkg_resources.cleanup_resources)
-        include_path = pkg_resources.resource_filename(__package__, "include")
-        colors_path = os.path.join(include_path, "colors-100.json")
+        dir = os.path.dirname(__file__)
+        colors_path = os.path.join(dir, "include", "colors-100.json")
 
     with open(colors_path) as thematic_json_io:
         thematic_json = json.load(thematic_json_io)

graspologic/version.py

@@ -1,50 +1,6 @@
-# Copyright (c) Microsoft Corporation and contributors.
-# Licensed under the MIT License.
-
-import configparser
-import datetime
-from typing import Optional
-
-import pkg_resources
-
-
-def __from_distribution() -> Optional[str]:
-    """
-    This will be coming from our sdist's setup.cfg that we package up, and usually (or
-    always?) means it will mean the sdist has been installed in the python environment.
-
-    This is the common case when you've installed graspologic from PyPI
-    """
-    try:
-        return str(pkg_resources.get_distribution("graspologic").version)
-    except BaseException:
-        return None
-
-
-def __from_filesystem(setup_config: str = "setup.cfg") -> Optional[str]:
-    """
-    If we aren't an installed library, pkg_resources.get_distribution() won't be
-    able to find setup.cfg's version, so we'll try to look at it from the filesystem
-    We can probably presume in this circumstance that we are not a properly installed
-    version and thus we're going to mark it with a dev label and a time entry
-
-    This is the common case when you are developing graspologic itself.
-    """
-    try:
-        cfg_parser = configparser.RawConfigParser()
-        cfg_parser.read(setup_config)
-        base_version = cfg_parser.get("metadata", "version")
-        now = datetime.datetime.today().strftime("%Y%m%d%H%M%S")
-        return f"{base_version}.dev{now}"
-    except BaseException:
-        return None
-
-
+# This version placeholder will be replaced during package build.
+# Do not commit this file.
+__version__ ="0.0.0"#
+#
 def __version() -> str:
-    """
-    Distribution takes precedence, but otherwise we try to read it from the filesystem
-
-    If all else fails, we have no way of knowing what version we are
-    """
-    possible_version = __from_distribution() or __from_filesystem()
-    return possible_version if possible_version is not None else "unknown"
+    return __version__